View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13699_high_1 (Length: 369)
Name: NF13699_high_1
Description: NF13699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13699_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 20 - 351
Target Start/End: Original strand, 27844365 - 27844696
Alignment:
| Q |
20 |
aacagtctttgtcctacctccaaccgtcatcatctccgctcgaaccggtttcgctaaaacagaccggattgcttgtgttaggtcatggttcagacccgga |
119 |
Q |
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| T |
27844365 |
aacagtctttgtcctacctccaaccgtcatcatctcagctcgaaccggtttcgctaaaacagaccggattgcttgtgttagatcatggttcagacccgga |
27844464 |
T |
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| Q |
120 |
cgctcctcacaacacactgtcactttcatcctccgtggttctccttcctctttgccgcaataactcactgtcgcctcatctgattctcctggaaacggcc |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27844465 |
cgctcctcacaacacactgtcactttcatcctccgtggttctccttcctctttgccgcaataactcactgtcgcctcatctgattctcctggaaacggcc |
27844564 |
T |
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| Q |
220 |
atatctcaactacctctgtagaattaactgaaccaggttctccgctgcacgaagaagaagactctccatcattgtgacgattcgccatttcatcagcttc |
319 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27844565 |
atgtctcaactacctctgtagaattaactgaaccaggttctccgctgcacgaagaagaagactctccatcattgtgacgattcgccatttcatcagcttc |
27844664 |
T |
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| Q |
320 |
cttcttcaaccgtttcacgtgctgcaccactt |
351 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
27844665 |
cttcttcaaccgtttcacgtgctgcaccactt |
27844696 |
T |
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