View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13699_low_1 (Length: 393)
Name: NF13699_low_1
Description: NF13699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13699_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 330; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 19 - 381
Target Start/End: Complemental strand, 14941125 - 14940761
Alignment:
| Q |
19 |
gtaagaggtatatgaatatgattatgcagccatcttatagtttaaggcagccacatacaaagagatgtttgtaaaaacataaatccagcagaaacagaaa |
118 |
Q |
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| T |
14941125 |
gtaaaaggtatatggatatgattatgcagccatcttatagtttaaggcagccacatacaaagagatgtttgtaaaaacataaatccagcagaaacagaaa |
14941026 |
T |
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| Q |
119 |
aggggtggaacat--gagttcaacgaccaacaattcatgattcagaactccaagcaagctctgtcaaagcaagccccgcctccaccttctttatttcaaa |
216 |
Q |
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| T |
14941025 |
aggggtggaacatacgagttcaacgaccaacaattcatgattcagaactccaagcaagctctgtcaaagcaagccccgcctccaccatctttatttcaaa |
14940926 |
T |
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| Q |
217 |
gataagtttcctccacatcttgagaacaaacatttcagcctcttcatctaaaatgacctgaagacactctagcatttgagatgctttcatgtgttcttgt |
316 |
Q |
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| T |
14940925 |
gataagtttcctccacatcttgagaacaaacatttcagcctcttcatctaaaatgacctgaagacgctctatcatttgagatgctttcatgtgttcttgt |
14940826 |
T |
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| Q |
317 |
gtgcatgagacaatataatctgtcaatgtattttcttcttcacctaaaaactctttgatattctt |
381 |
Q |
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| T |
14940825 |
gtgcatgagacaatataatctgtcaatgtattttcttcttcacctaaaaactctttgattttctt |
14940761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 40 - 381
Target Start/End: Complemental strand, 14938774 - 14938447
Alignment:
| Q |
40 |
ttatgcagccatcttatagtttaaggcagccacatacaaagagatgtttgtaaaaacataaatccagcagaaacagaaaaggggtggaacatg--agttc |
137 |
Q |
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| T |
14938774 |
ttatgcagccatcttatattttaaggcagccacatgtgaagagatgtttgtagaaacataaatccagcagaaaaggaaaaggg-tggaacatacaaatac |
14938676 |
T |
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| Q |
138 |
aacgaccaacaattcatgattcagaactccaagcaagctctgtcaaagcaagccccgcctccaccttctttatttcaaagataagtttcctccacatctt |
237 |
Q |
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| T |
14938675 |
aacgaccaacaattcatgatttggacttcgaagcaagccctgtc---------------tctaccttctttatttcaaagataagcatcctccacatctt |
14938591 |
T |
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| Q |
238 |
gagaacaaacatttcagcctcttcatctaaaatgacctgaagacactctagcatttgagatgctttcatgtgttcttgtgtgcatgagacaatataatct |
337 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || |||||||||||| | |||||||||||||||| |
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| T |
14938590 |
gagaacaaacatttcagcctcttcatctaaaatgacctgaagacgctctagcatttgagatgcttgcacgtgttcttgtgtacttgagacaatataatct |
14938491 |
T |
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| Q |
338 |
gtcaatgtattttcttcttcacctaaaaactctttgatattctt |
381 |
Q |
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| T |
14938490 |
gtcaatgtattttcttcttcccctaaaaactctttaattttctt |
14938447 |
T |
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