View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13699_low_3 (Length: 358)
Name: NF13699_low_3
Description: NF13699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13699_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 303; Significance: 1e-170; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 42 - 344
Target Start/End: Original strand, 9679473 - 9679775
Alignment:
| Q |
42 |
ctaagagcacaaatatcggcagtgtcttttggcacataaggtccacgtgtggctactagtgtcaggaaaggcatggataattgcataacagttggtatct |
141 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9679473 |
ctaagagcacaaatatcggcagtgtcttttggcacataaggtccacgtgtggctactagtgtcaggaaaggcatggataattgcataacagttggtatct |
9679572 |
T |
|
| Q |
142 |
tttcttggctacggttccaaattctaccactgtgtcttaaagcaattctttctcttcctcacacacattttgaaataaatcaattaaacaataaatgaag |
241 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9679573 |
tttcttggctacggttccaaattctaccactgtgtcttaaagcaattctttctcttcctcacacacattttgaaataaatcaattaaacaataaatgaag |
9679672 |
T |
|
| Q |
242 |
atattatttaccattataattgttaccaactacttcatattaccgttctctgaatatttttataaccgttgcaactttttcttaccgttgcacatatctc |
341 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9679673 |
atattatttaccattataattgttaccaactacttcatattaccgttctctgaatatttttataaccgttgcaactttttcttaccgttgcacatatctc |
9679772 |
T |
|
| Q |
342 |
tga |
344 |
Q |
| |
|
||| |
|
|
| T |
9679773 |
tga |
9679775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 42 - 218
Target Start/End: Original strand, 17312637 - 17312813
Alignment:
| Q |
42 |
ctaagagcacaaatatcggcagtgtcttttggcacataaggtccacgtgtggctactagtgtcaggaaaggcatggataattgcataacagttggtatct |
141 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
17312637 |
ctaagagcacaaatatcggcagtgtcttttggcacataaggtccacgtgtggctactagtgtcaggaaaggaatggataattgcataacagttggtatct |
17312736 |
T |
|
| Q |
142 |
tttcttggctacggttccaaattctaccactgtgtcttaaagcaattctttctcttcctcacacacattttgaaata |
218 |
Q |
| |
|
|||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
17312737 |
tttcttggctacggtttcaaattctaccaccgtgtcttaaagcaattctttctcttcctcacacacattttgaaata |
17312813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 89 - 207
Target Start/End: Original strand, 5187313 - 5187432
Alignment:
| Q |
89 |
tgtggctactagtgtcaggaaaggcatggataattgcataacagttggtatcttttcttggctacggttccaaattctac--cactgtgtcttaaagcaa |
186 |
Q |
| |
|
||||||||||||||||||||| |||| |||||||||||||| ||||||| |||||||||| |||| ||||||| || || || |||||||| | ||| |
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| T |
5187313 |
tgtggctactagtgtcaggaa-ggcagggataattgcataatagttggtgtcttttcttgcctactattccaaactcaactataccgtgtcttagatcaa |
5187411 |
T |
|
| Q |
187 |
ttctttctcttcctcacacac |
207 |
Q |
| |
|
||||||||||| |||| |||| |
|
|
| T |
5187412 |
ttctttctctttctcaaacac |
5187432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 237 - 271
Target Start/End: Original strand, 9679773 - 9679807
Alignment:
| Q |
237 |
tgaagatattatttaccattataattgttaccaac |
271 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| |
|
|
| T |
9679773 |
tgaagattttatttaccattataattgttaccaac |
9679807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 131 - 344
Target Start/End: Original strand, 46822091 - 46822304
Alignment:
| Q |
131 |
agttggtatcttttcttggctacggttccaaattctaccactgtgtcttaaagcaattctttctcttcctcacacacattttgaaataaatcaattaaac |
230 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
46822091 |
agttggtatcttttcttggctacggttccaaattctaccactgtgtcttaaagcaattctttctcttcctcacacacattttgaaataaatcaattaaac |
46822190 |
T |
|
| Q |
231 |
aataaatgaagatattatttaccattataattgttaccaactacttcatattaccgttctctgaatatttttataaccgttgcaactttttcttaccgtt |
330 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
46822191 |
aataaatgaagatattatttaccattataattgttaccaactacttcatattaccgttctttgaatatttttataaccgttgcaactttttcttaccgtt |
46822290 |
T |
|
| Q |
331 |
gcacatatctctga |
344 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
46822291 |
gcacatatctctga |
46822304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 237 - 271
Target Start/End: Original strand, 46822302 - 46822336
Alignment:
| Q |
237 |
tgaagatattatttaccattataattgttaccaac |
271 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| |
|
|
| T |
46822302 |
tgaagattttatttaccattataattgttaccaac |
46822336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 170; Significance: 4e-91; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 45 - 218
Target Start/End: Original strand, 2680895 - 2681068
Alignment:
| Q |
45 |
agagcacaaatatcggcagtgtcttttggcacataaggtccacgtgtggctactagtgtcaggaaaggcatggataattgcataacagttggtatctttt |
144 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2680895 |
agagcacaaatatcgacagtgtcttttggcacataaggtccacgtgtggctactagtgtcaggaaaggcatggataattgcataacagttggtatctttt |
2680994 |
T |
|
| Q |
145 |
cttggctacggttccaaattctaccactgtgtcttaaagcaattctttctcttcctcacacacattttgaaata |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2680995 |
cttggctacggttccaaattctaccactgtgtcttaaagcaattctttctcttcctcacacacattttgaaata |
2681068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 43 - 213
Target Start/End: Complemental strand, 9268633 - 9268463
Alignment:
| Q |
43 |
taagagcacaaatatcggcagtgtcttttggcacataaggtccacgtgtggctactagtgtcaggaaaggcatggataattgcataacagttggtatctt |
142 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
9268633 |
taagagcacaaatatcggcagtgtcttttggcacataaggtccacgtgtggctactagtgtcaggaaaggcatggataattgcataacagttggtatctt |
9268534 |
T |
|
| Q |
143 |
ttcttggctacggttccaaattctaccactgtgtcttaaagcaattctttctcttcctcacacacattttg |
213 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9268533 |
ttcttggctacggttccaaattctaccattgtgtcttaaagcaattctttctcttcctcacacacattttg |
9268463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 85 - 282
Target Start/End: Original strand, 1885022 - 1885218
Alignment:
| Q |
85 |
cacgtgtggctactagtgtcaggaaaggcatggataattgcataacagttggtatcttttcttggctacggttccaaattctaccactgtgtcttaaagc |
184 |
Q |
| |
|
||||||| |||||| ||||||| || |||||||||||| |||| ||||||| ||||||||| |||||| ||||||| |||||||| || ||||| ||| |
|
|
| T |
1885022 |
cacgtgtagctacttgtgtcag-aagtgcatggataattagataatagttggtgtcttttctttgctacgtttccaaactctaccaccgtatcttagagc |
1885120 |
T |
|
| Q |
185 |
aattctttctcttcctcacacacattttgaaataaatcaattaaacaataaatgaagatattatttaccattataattgttaccaactacttcatatt |
282 |
Q |
| |
|
|||||||||| || ||| || ||| |||||| ||| ||| |||||| ||| || |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1885121 |
aattctttctttttttcaagcatttttctctataaattaatcaaataataaacgaacattttatttaccattataattgttaccaactacttcatatt |
1885218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 127 - 234
Target Start/End: Original strand, 9958464 - 9958569
Alignment:
| Q |
127 |
taacagttggtatcttttcttggctacggttccaaattctaccactgtgtcttaaagcaattctttctcttcctcacacacattttgaaataaatcaatt |
226 |
Q |
| |
|
||||| ||||| |||||||||| ||| ||||||||| |||||||| ||||||| ||| ||||||||||| |||| ||| |||||||||||||||||| |
|
|
| T |
9958464 |
taacaattggtgtcttttcttgcctatggttccaaactctaccaccgtgtcttt--gcatttctttctctttctcatacattttttgaaataaatcaatt |
9958561 |
T |
|
| Q |
227 |
aaacaata |
234 |
Q |
| |
|
|||||||| |
|
|
| T |
9958562 |
aaacaata |
9958569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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