View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1369_high_1 (Length: 789)
Name: NF1369_high_1
Description: NF1369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1369_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 637; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 637; E-Value: 0
Query Start/End: Original strand, 75 - 760
Target Start/End: Complemental strand, 34630076 - 34629393
Alignment:
| Q |
75 |
agcagagatgggtaagaaaaccatttctcaggattttaacttttaaatcgcttgcttggttttgcatctatctttgtctgatttgggatattatggcttg |
174 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34630076 |
agcacagatgggtaagaaaaccatttctcaggattttaacttttaaatcgcttgcttggttttgcatctatctttgtctgatttgggatattatggcttg |
34629977 |
T |
|
| Q |
175 |
ttctacttaaacaatgttaattgagcttgattccatacttggattatctatattaagactttgaattttgaacagatcctgaaaatccagaattttcata |
274 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34629976 |
ttctacttaaacaatgttaattgagcttgattccatacttgcattatctatatcaagactttgaattttgaacagatcctgaaaatccagaattttcata |
34629877 |
T |
|
| Q |
275 |
tataatctgtagaaaatattttgtttagtttattggcatcgttcaaatttgttttctgtcataatgtagggatttggagatactgtccattgggaaagag |
374 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34629876 |
tataatctgtagaaaatattttgtttagtttattggcatcgttcaaatttgttttctgtcataatgtagggatttggagatactgtccattgggaaagag |
34629777 |
T |
|
| Q |
375 |
gcactatttactgcagcaactgttgtctccataaagtcataggagcgtaaataacagcactgaattttgcatcgactttattagctttattactcattct |
474 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| |
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| T |
34629776 |
gcactatttactgcagcaactgttatctccataaagtcataggagcgtaaataacagcactgaatttcgcattgactttattagctttattactcattct |
34629677 |
T |
|
| Q |
475 |
tctttaaatgaatgtgttcactttgatcaactcattctttattggagtctgaggctttgtaggttaggttaaatgcaagaaatacttttccatagggaaa |
574 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34629676 |
tctttaaatgaatgtgttcactttgatcaactcattctttattggagtctgaggctttgtaggttaggttaaatgcaagaaatacttttccatagggaaa |
34629577 |
T |
|
| Q |
575 |
ttttgtaccttgtctcactgaatgatttataatggcaatatcccaaaccactttaagagtaagtta-atgattggaatattacaattgaaaatgatttta |
673 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
34629576 |
ttttgtaccttgtctcactgaatgatttataatggcaatatcccaaaccagtttaagagtaagttacatgattggaatattacaattgaaaatgatttta |
34629477 |
T |
|
| Q |
674 |
gatcgtatcatttgatactaataatatcgtgatgtatgataatgttatttgtcaaattatcatttatatattgattatgaatactgc |
760 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34629476 |
gatcgtatcatttgatac---taatatcgtgatgtatgataatgttatttgtcaaattatcatttatatattgattatgaatactgc |
34629393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 127; Significance: 4e-65; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 127; E-Value: 4e-65
Query Start/End: Original strand, 232 - 526
Target Start/End: Complemental strand, 14298694 - 14298414
Alignment:
| Q |
232 |
actttgaattttgaacagatcctgaaaatccagaattttcatatataatctgtagaaaatattttgtttagtttattggcatcgttcaaatttgttttct |
331 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||||||||||||| || | ||||||||| ||||||| |
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| T |
14298694 |
actttgaattttgaacagatcctgaaaatccagaattttcatatataacctgttgaaaacattttgtttagtttaccggaaaagttcaaattagttttct |
14298595 |
T |
|
| Q |
332 |
gtcataatgtagggatttggagatactgtccattgggaaagaggcactatttactgcagcaactgttgtctccataaagtcataggagcgtaaataacag |
431 |
Q |
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||| ||||| ||| || ||||||||||||||||||| |||||||||||||||||||||||| |||| ||||||| |||||||||||| |||||||||| |
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| T |
14298594 |
gtcttaatgcaggaatatggagatactgtccattggaaaagaggcactatttactgcagcatgtgttatctccatgaagtcataggagtgtaaataacaa |
14298495 |
T |
|
| Q |
432 |
cactgaattttgcatcgactttattagctttattactcattcttctttaaatgaatgtgttcactttgatcaactcattctttattggagtctga |
526 |
Q |
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|| |||| |||||||| |||| | | || ||| ||||| |||||||||||| |||||||||||||||||||||||||||||| |
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| T |
14298494 |
cattgaa------------tttattagttttaatcattat--ttccttaaaggaatgtgttcacattgatcaactcattctttattggagtctga |
14298414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 716 - 758
Target Start/End: Complemental strand, 14298255 - 14298213
Alignment:
| Q |
716 |
tgttatttgtcaaattatcatttatatattgattatgaatact |
758 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||| |||||| |
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| T |
14298255 |
tgttatttgtcaaattattatttatatattgattataaatact |
14298213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 75 - 135
Target Start/End: Complemental strand, 14298802 - 14298744
Alignment:
| Q |
75 |
agcagagatgggtaagaaaaccatttctcaggattttaacttttaaatcgcttgcttggtt |
135 |
Q |
| |
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|||| |||||||||||||||||||||||||||||| |||| |||||||||| ||||||| |
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| T |
14298802 |
agcacagatgggtaagaaaaccatttctcaggattataac--gtaaatcgcttccttggtt |
14298744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 652 - 688
Target Start/End: Complemental strand, 14298343 - 14298307
Alignment:
| Q |
652 |
attacaattgaaaatgattttagatcgtatcatttga |
688 |
Q |
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||||||||||||||||||||||||| ||||||||||| |
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| T |
14298343 |
attacaattgaaaatgattttagatagtatcatttga |
14298307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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