View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1369_high_11 (Length: 548)
Name: NF1369_high_11
Description: NF1369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1369_high_11 |
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Alignment Details
Target: chr7 (Bit Score: 387; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 148 - 538
Target Start/End: Original strand, 32729556 - 32729946
Alignment:
| Q |
148 |
agttcaaattaactattccagatgctcaatcctgtgatatactctttctgttttgtattataagcaaaaaggtacgcgtatttattagaaaatatggcga |
247 |
Q |
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| T |
32729556 |
agttcaaattaactattccagatgctcaatcctgtgatatactctttctgttttgtattataagcaaaaaggtacgcgtatttattagaaaatatggcga |
32729655 |
T |
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| Q |
248 |
taaggtacattaccgaatttctgatcaaggaccttgacaaagggagcaaggcagttagtggtgcaagaagcattgctgatgatatcatcagcatggctgt |
347 |
Q |
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| T |
32729656 |
taaggtacattaccgaatttctgatcaaggaccttgacaaagggagcaaggcagttagtggtgcaagaagcattgctgatgatatcatcagcatggctgt |
32729755 |
T |
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| Q |
348 |
aaccatcagcattgacaccaaccacataggttgggatgtctccttttccgggggctgtgatgagtaccttcttagctcctgctgtaatgtgcttccctgc |
447 |
Q |
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| T |
32729756 |
aaccatcagcattgacaccaaccacataagttgggatgtctccttttccgggggctgtgatgagtaccttcttagctcctgctgtaatgtgcttccctgc |
32729855 |
T |
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| Q |
448 |
accttctctgtccacaaacactccagttccttcaatcaccaaatctattcccaactccctgcaatagcaataacaatctttataatctgtg |
538 |
Q |
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| T |
32729856 |
accttctctgtccacaaacactccagttccttcaatcaccaaatctattcccaactccctgcaatagcaataacaatctttataatctgtg |
32729946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 257 - 322
Target Start/End: Original strand, 19748689 - 19748754
Alignment:
| Q |
257 |
ttaccgaatttctgatcaaggaccttgacaaagggagcaaggcagttagtggtgcaagaagcattg |
322 |
Q |
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| T |
19748689 |
ttaccgaattcttcatccaggatcttcacaaagggagcaagacagtttgtggtgcaagaagcattg |
19748754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 257 - 325
Target Start/End: Original strand, 54182167 - 54182235
Alignment:
| Q |
257 |
ttaccgaatttctgatcaaggaccttgacaaagggagcaaggcagttagtggtgcaagaagcattgctg |
325 |
Q |
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| T |
54182167 |
ttaccgaattcttcatccaggatcttcacaaagggagcaagacagtttgtggtgcaagaagcattgctg |
54182235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 275 - 325
Target Start/End: Original strand, 6224750 - 6224800
Alignment:
| Q |
275 |
aggaccttgacaaagggagcaaggcagttagtggtgcaagaagcattgctg |
325 |
Q |
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|||| ||| ||||||||||||| ||||| ||||||||||||||||||||| |
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| T |
6224750 |
aggatcttcacaaagggagcaacacagtttgtggtgcaagaagcattgctg |
6224800 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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