View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1369_high_12 (Length: 538)
Name: NF1369_high_12
Description: NF1369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1369_high_12 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 461; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 11 - 538
Target Start/End: Original strand, 49100750 - 49101279
Alignment:
| Q |
11 |
cacagacgattaagtatgtgtttttatagattgtttcacattttcacgatgaaaaatttattctagagatgtaaaattaatttcaacatgttagcatgtg |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49100750 |
cacagacgattaagtatgtgtttttatagattgtttcacattttcacgatgaaaaatttattctagagatgtaaaattaatttcaacatgttagcatgtg |
49100849 |
T |
|
| Q |
111 |
ttggaatagagtttattttgtcttgtgaattcactcttgactatgaactcttgcctccaactttattttttagcctaaaattaattgttcgatttacttt |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49100850 |
ttggaatagagtttattttgtcttgtgaattcactcttgactatggactcttgcctccaactttattttttagcctaaaattaattgttcgatttacttt |
49100949 |
T |
|
| Q |
211 |
tactaaatgtgtttaaccaaaaatctttttatatgaaatcaattttacataatcaatcatcaaaattaattctactgagaaccaaacacatattaaatat |
310 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49100950 |
tactaaatgtgtttaatcaaaaatctttttatataaaatcaattttacataatcaatcatcaaaattaattctactgagaaccaaacacatattaaatat |
49101049 |
T |
|
| Q |
311 |
actaaacaattggattcaagtggttaatgaactcaactaaaagactaattggtcacaagaagaatctgaattcaatttttaggtggaacaatttttaatt |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
49101050 |
actaaacaattggattcaagtggttaatgaactcaactaaaagattaattggtcacaagaagaatctgaattcaatttttaggtggaacaattcttaatt |
49101149 |
T |
|
| Q |
411 |
agtcaacttttatttcgc-tcccaattaaactttatattattacgaccccttcctataagaattgaagattt-nnnnnnncacatcaaattcatgcataa |
508 |
Q |
| |
|
|||||||||||||||||| |||| ||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
49101150 |
agtcaacttttatttcgcttcccgattaaactttagattattacgaccccttcctataagaattgaagatttaaaaaaaacacatcaaattcatgcataa |
49101249 |
T |
|
| Q |
509 |
atgtaaaatttcgccaaatctaacgatttt |
538 |
Q |
| |
|
|||||| ||||||||||||||||||||||| |
|
|
| T |
49101250 |
atgtaagatttcgccaaatctaacgatttt |
49101279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 371 - 403
Target Start/End: Original strand, 118817 - 118849
Alignment:
| Q |
371 |
agaatctgaattcaatttttaggtggaacaatt |
403 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| |
|
|
| T |
118817 |
agaatctgaattcaatttataggtggaacaatt |
118849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University