View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1369_high_14 (Length: 508)

Name: NF1369_high_14
Description: NF1369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1369_high_14
NF1369_high_14
[»] chr6 (19 HSPs)
chr6 (11-329)||(1780571-1780889)
chr6 (11-180)||(29486475-29486642)
chr6 (82-176)||(24428827-24428919)
chr6 (17-129)||(22956378-22956490)
chr6 (17-129)||(23831902-23832014)
chr6 (101-180)||(29363531-29363609)
chr6 (16-121)||(21216466-21216571)
chr6 (175-303)||(33224522-33224650)
chr6 (175-306)||(29486224-29486355)
chr6 (11-144)||(31216217-31216346)
chr6 (204-303)||(904253-904352)
chr6 (35-179)||(903975-904115)
chr6 (101-180)||(34729857-34729935)
chr6 (175-305)||(22956637-22956766)
chr6 (175-305)||(23831626-23831755)
chr6 (182-252)||(24428622-24428692)
chr6 (175-235)||(8560093-8560153)
chr6 (266-304)||(27673842-27673880)
chr6 (72-147)||(8559901-8559972)
[»] chr3 (21 HSPs)
chr3 (11-329)||(40763664-40763982)
chr3 (11-328)||(20843116-20843432)
chr3 (12-329)||(3458006-3458324)
chr3 (17-129)||(52403212-52403324)
chr3 (175-304)||(16152063-16152191)
chr3 (61-180)||(17652934-17653051)
chr3 (17-129)||(11906529-11906641)
chr3 (175-303)||(19795412-19795540)
chr3 (53-175)||(16152317-16152437)
chr3 (11-180)||(29648421-29648590)
chr3 (20-179)||(35106430-35106584)
chr3 (115-180)||(21296014-21296078)
chr3 (16-146)||(38171470-38171603)
chr3 (115-180)||(46823886-46823950)
chr3 (199-245)||(11033972-11034018)
chr3 (184-238)||(29123428-29123482)
chr3 (175-259)||(35061864-35061948)
chr3 (73-116)||(36312281-36312324)
chr3 (185-305)||(52403473-52403595)
chr3 (72-147)||(19795661-19795732)
chr3 (73-153)||(37175495-37175573)
[»] chr7 (29 HSPs)
chr7 (11-328)||(13465310-13465627)
chr7 (11-328)||(28491167-28491484)
chr7 (85-328)||(25439566-25439806)
chr7 (11-180)||(34659394-34659561)
chr7 (33-180)||(29715764-29715909)
chr7 (81-180)||(37202823-37202921)
chr7 (17-129)||(25592182-25592294)
chr7 (176-306)||(37202571-37202700)
chr7 (53-180)||(758911-759036)
chr7 (101-180)||(46211663-46211741)
chr7 (61-180)||(48609052-48609169)
chr7 (9-114)||(14047081-14047188)
chr7 (9-114)||(14357111-14357218)
chr7 (175-303)||(45855342-45855470)
chr7 (184-238)||(27097050-27097104)
chr7 (184-238)||(27181199-27181253)
chr7 (198-244)||(29716051-29716097)
chr7 (175-329)||(40253844-40253998)
chr7 (11-56)||(25439521-25439566)
chr7 (175-292)||(25591918-25592035)
chr7 (182-245)||(34658929-34658992)
chr7 (17-153)||(37049134-37049269)
chr7 (101-158)||(83617-83673)
chr7 (115-180)||(39719961-39720025)
chr7 (73-121)||(20926818-20926866)
chr7 (198-236)||(20927083-20927121)
chr7 (96-150)||(40253630-40253683)
chr7 (17-49)||(40253551-40253583)
chr7 (108-156)||(45228050-45228098)
[»] chr1 (33 HSPs)
chr1 (11-328)||(30950737-30951054)
chr1 (9-336)||(29798978-29799305)
chr1 (329-479)||(31032929-31033079)
chr1 (33-175)||(11142697-11142837)
chr1 (11-169)||(33240790-33240946)
chr1 (54-175)||(10406128-10406247)
chr1 (11-179)||(47367882-47368049)
chr1 (33-175)||(10177922-10178062)
chr1 (21-142)||(52110936-52111056)
chr1 (83-163)||(28403123-28403202)
chr1 (101-180)||(44961470-44961548)
chr1 (177-296)||(47367639-47367757)
chr1 (71-180)||(19313401-19313508)
chr1 (175-304)||(23614402-23614530)
chr1 (53-175)||(23614656-23614776)
chr1 (33-180)||(1600502-1600650)
chr1 (175-238)||(29357169-29357232)
chr1 (35-179)||(46515613-46515753)
chr1 (204-303)||(21972199-21972298)
chr1 (115-180)||(15757758-15757822)
chr1 (175-240)||(19313217-19313281)
chr1 (35-179)||(21972436-21972576)
chr1 (175-287)||(10989447-10989559)
chr1 (204-304)||(11142442-11142541)
chr1 (17-131)||(5184626-5184737)
chr1 (115-180)||(10620145-10620209)
chr1 (175-238)||(5184891-5184954)
chr1 (175-238)||(10177734-10177796)
chr1 (205-240)||(44960909-44960944)
chr1 (17-147)||(10989152-10989281)
chr1 (72-153)||(27696506-27696583)
chr1 (72-153)||(24134376-24134455)
chr1 (175-238)||(46515441-46515505)
[»] chr2 (18 HSPs)
chr2 (11-328)||(16546206-16546523)
chr2 (11-317)||(45655875-45656180)
chr2 (40-226)||(39070152-39070338)
chr2 (19-239)||(37614532-37614754)
chr2 (11-180)||(42799084-42799253)
chr2 (212-327)||(39070355-39070459)
chr2 (35-167)||(4435287-4435417)
chr2 (185-331)||(26180406-26180551)
chr2 (175-329)||(8230376-8230531)
chr2 (17-156)||(21746085-21746221)
chr2 (18-131)||(14802654-14802768)
chr2 (175-328)||(35524913-35525066)
chr2 (11-52)||(39069978-39070019)
chr2 (193-252)||(42799360-42799420)
chr2 (96-150)||(35524694-35524747)
chr2 (208-304)||(4435024-4435120)
chr2 (17-49)||(35524615-35524647)
chr2 (53-117)||(38881794-38881857)
[»] chr8 (26 HSPs)
chr8 (11-328)||(12491418-12491735)
chr8 (11-180)||(18881858-18882025)
chr8 (11-180)||(38172699-38172870)
chr8 (33-175)||(38699683-38699823)
chr8 (175-328)||(6115131-6115284)
chr8 (175-328)||(32415644-32415797)
chr8 (54-169)||(43115234-43115347)
chr8 (36-173)||(13541357-13541491)
chr8 (36-173)||(13682982-13683116)
chr8 (11-180)||(41570441-41570609)
chr8 (183-305)||(41570189-41570311)
chr8 (17-129)||(6114873-6114984)
chr8 (175-232)||(38172982-38173039)
chr8 (75-180)||(40118144-40118247)
chr8 (175-259)||(1233756-1233840)
chr8 (184-238)||(5808853-5808907)
chr8 (115-180)||(4072227-4072291)
chr8 (115-180)||(21441593-21441657)
chr8 (175-259)||(13641112-13641196)
chr8 (175-259)||(13741524-13741608)
chr8 (134-172)||(33613707-33613745)
chr8 (115-180)||(41323181-41323245)
chr8 (72-153)||(1233564-1233641)
chr8 (72-153)||(13640920-13640997)
chr8 (72-153)||(13741332-13741409)
chr8 (191-232)||(43115046-43115087)
[»] chr4 (24 HSPs)
chr4 (11-328)||(22785880-22786196)
chr4 (11-317)||(6016739-6017044)
chr4 (11-317)||(2407018-2407324)
chr4 (11-180)||(21790774-21790943)
chr4 (11-180)||(54165869-54166031)
chr4 (11-180)||(52628294-52628465)
chr4 (175-304)||(48861760-48861888)
chr4 (33-180)||(8745633-8745778)
chr4 (26-167)||(17815897-17816040)
chr4 (175-303)||(21790525-21790652)
chr4 (101-180)||(48841184-48841262)
chr4 (11-129)||(11950592-11950710)
chr4 (53-175)||(48862014-48862134)
chr4 (175-245)||(52628100-52628170)
chr4 (175-328)||(8762829-8762982)
chr4 (202-297)||(48840949-48841043)
chr4 (182-238)||(54166160-54166216)
chr4 (175-259)||(16608578-16608662)
chr4 (115-180)||(43892522-43892586)
chr4 (96-147)||(8762614-8762664)
chr4 (96-150)||(5476394-5476447)
chr4 (182-219)||(856894-856931)
chr4 (17-49)||(5476315-5476347)
chr4 (17-49)||(8762535-8762567)
[»] chr5 (20 HSPs)
chr5 (11-317)||(40528085-40528392)
chr5 (11-179)||(16908551-16908717)
chr5 (11-158)||(40360936-40361080)
chr5 (176-317)||(16908840-16908979)
chr5 (16-144)||(7008942-7009069)
chr5 (53-180)||(34034105-34034230)
chr5 (54-175)||(17695850-17695969)
chr5 (11-180)||(19948752-19948915)
chr5 (175-245)||(22098943-22099013)
chr5 (101-180)||(41640054-41640132)
chr5 (175-333)||(3498684-3498842)
chr5 (175-304)||(34033839-34033967)
chr5 (115-180)||(13517580-13517644)
chr5 (115-180)||(17768976-17769040)
chr5 (35-179)||(42353164-42353304)
chr5 (175-237)||(19949035-19949097)
chr5 (74-179)||(14521651-14521753)
chr5 (278-328)||(7008761-7008811)
chr5 (17-49)||(3498391-3498423)
chr5 (175-238)||(42352990-42353054)
[»] scaffold0186 (1 HSPs)
scaffold0186 (11-180)||(22726-22893)
[»] scaffold0361 (1 HSPs)
scaffold0361 (175-315)||(6917-7056)
[»] scaffold0002 (2 HSPs)
scaffold0002 (84-179)||(428333-428426)
scaffold0002 (175-238)||(428548-428611)
[»] scaffold0110 (1 HSPs)
scaffold0110 (175-237)||(7097-7159)
[»] scaffold0005 (1 HSPs)
scaffold0005 (34-180)||(292188-292332)
[»] scaffold0481 (2 HSPs)
scaffold0481 (107-180)||(6701-6773)
scaffold0481 (198-244)||(6516-6562)
[»] scaffold1554 (1 HSPs)
scaffold1554 (40-158)||(819-935)
[»] scaffold0271 (1 HSPs)
scaffold0271 (175-288)||(20141-20255)


Alignment Details
Target: chr6 (Bit Score: 299; Significance: 1e-168; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 11 - 329
Target Start/End: Original strand, 1780571 - 1780889
Alignment:
Q  11 caaaggataaaaattgacaatagctatttaaaaaagttgtgtaaaatgcatttcaagaaaccaattttatccataattgaccgtttactaaatagattaa 110  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1780571 caaaggataaaaattgacgatagctatttaaaaaagttgtgtaaaatgcatttcaagaaaccaattttatccataattgaccgtttactaaatagattaa 1780670  T
Q  111 taatgtcttttccaatgtaaaacaaataggttatttgcaagaaactcaatgtccatttaatttgtttatgttaattttcgacaactgaatttgtttgggg 210  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1780671 taatgtcttttccaatgtaaaacaaattggttatttgcaagaaactcaatgtccatttaatttgtttatgttaattttcgacaactgaatttgtttgggg 1780770  T
Q  211 tagctcaatgtttattatttggggtagccgaatattaatttacaccaacttattaaagattaatatattttttggggtagccaaggctaccccttgtcaa 310  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  1780771 tagctcaatgtttattatatggggtagccgaatattaatttacaccaactcattaaagattaatatattttttggggtagccaaggctaccccttgtcaa 1780870  T
Q  311 tgaagggatgcgcccctgc 329  Q
    ||||||| |||||||||||    
T  1780871 tgaagggctgcgcccctgc 1780889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 11 - 180
Target Start/End: Complemental strand, 29486642 - 29486475
Alignment:
Q  11 caaaggataaaaattgacaatagctatttaaaaaagttgtgtaaaatgcatttcaagaaaccaattttatccataattgaccgtttactaaatagattaa 110  Q
    |||| |||||||||||||||||| |||||| ||||||||||  |||| |||||||||||  ||| ||||||||||||||||||||||||||||||||||     
T  29486642 caaatgataaaaattgacaatagttatttagaaaagttgtggcaaatacatttcaagaagtcaaatttatccataattgaccgtttactaaatagattat 29486543  T
Q  111 taatgtcttttccaatgtaaaacaaataggttatttgcaagaaactcaatgtccatttaatttgtttatg 180  Q
    |||| | |||| |||||||| | ||||||||||||||||||||||| | |||||| ||||||||||||||    
T  29486542 taatatatttttcaatgtaaga-aaataggttatttgcaagaaact-attgtccaattaatttgtttatg 29486475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 82 - 176
Target Start/End: Complemental strand, 24428919 - 24428827
Alignment:
Q  82 cataattgaccgtttactaaatagattaataatgtcttttccaatgtaaaacaaataggttatttgcaagaaactcaatgtccatttaatttgtt 176  Q
    ||||| |||||||| ||||||||||||||||||||||||| |||||| || |||||||||||||| |||||||||||||||||||||||||||||    
T  24428919 cataactgaccgtt-actaaatagattaataatgtctttttcaatgttaa-caaataggttattttcaagaaactcaatgtccatttaatttgtt 24428827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 17 - 129
Target Start/End: Original strand, 22956378 - 22956490
Alignment:
Q  17 ataaaaattgacaatagctatttaaaaaagttgtgtaaaatgcatttcaagaaaccaattttatccataattgaccgtttactaaatagattaataatgt 116  Q
    |||||||||||| |||||||||||||||||||   |||||||  ||||||||| |||||||||||||||| ||||  ||||| ||||||||||||||| |    
T  22956378 ataaaaattgacgatagctatttaaaaaagtttgataaaatgtgtttcaagaacccaattttatccataaatgactatttacaaaatagattaataatat 22956477  T
Q  117 cttttccaatgta 129  Q
     ||||||||||||    
T  22956478 attttccaatgta 22956490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 17 - 129
Target Start/End: Complemental strand, 23832014 - 23831902
Alignment:
Q  17 ataaaaattgacaatagctatttaaaaaagttgtgtaaaatgcatttcaagaaaccaattttatccataattgaccgtttactaaatagattaataatgt 116  Q
    |||||||||||| |||||||||||||||||||   |||||||  ||||||||| |||||||||||||||| ||||  ||||| ||||||||||||||| |    
T  23832014 ataaaaattgacgatagctatttaaaaaagtttgataaaatgtgtttcaagaacccaattttatccataaatgactatttacaaaatagattaataatat 23831915  T
Q  117 cttttccaatgta 129  Q
     ||||||||||||    
T  23831914 attttccaatgta 23831902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 101 - 180
Target Start/End: Original strand, 29363531 - 29363609
Alignment:
Q  101 aatagattaataatgtcttttccaatgtaaaacaaataggttatttgcaagaaactcaatgtccatttaatttgtttatg 180  Q
    |||||||||||||||||||||| ||||||||  ||||||||||||||||||||||||| ||| |||||||||||| ||||    
T  29363531 aatagattaataatgtcttttcaaatgtaaat-aaataggttatttgcaagaaactcattgtacatttaatttgtctatg 29363609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 16 - 121
Target Start/End: Complemental strand, 21216571 - 21216466
Alignment:
Q  16 gataaaaattgacaatagctatttaaaaaagttgtgtaaaatgcatttcaagaaaccaattttatccataattgaccgtttactaaatagattaataatg 115  Q
    ||||||||||||| |||||||||||||||||||   |||||||   ||||| || | |||||||||||||| ||||  ||||| ||||||||||||||||    
T  21216571 gataaaaattgacgatagctatttaaaaaagttagataaaatgtgattcaaaaagcaaattttatccataaatgactatttacaaaatagattaataatg 21216472  T
Q  116 tctttt 121  Q
    ||||||    
T  21216471 tctttt 21216466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 175 - 303
Target Start/End: Complemental strand, 33224650 - 33224522
Alignment:
Q  175 tttatgttaattttcgacaactgaatttgtttggggtagctcaatgtttattatttggggtagccgaatattaatttacaccaacttattaaagattaat 274  Q
    |||||||||||||||||||||  || |||||| |||||||||||| ||||||||||||||||||  ||||| ||| || ||||||  ||| |||| || |    
T  33224650 tttatgttaattttcgacaaccaaacttgtttagggtagctcaatatttattatttggggtagctaaatataaatatataccaaccaatttaagaatatt 33224551  T
Q  275 atattttttggggtagccaaggctacccc 303  Q
     | | |||||||||||| | |||||||||    
T  33224550 ttttattttggggtagcaagggctacccc 33224522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 175 - 306
Target Start/End: Complemental strand, 29486355 - 29486224
Alignment:
Q  175 tttatgttaattttcgacaactgaatttgtttggggtagctcaatgtttattatttggggtagccgaatattaatttacaccaacttattaaagattaat 274  Q
    |||||||||||||   |||| | ||||| |||||  |||||| |||||||||||||| |||||||  |||| | |||| |||||   ||| |||| || |    
T  29486355 tttatgttaatttcttacaattaaatttatttggaatagctcgatgtttattatttgaggtagccagatataattttataccaaacaattgaagaatagt 29486256  T
Q  275 atattttttggggtagccaaggctaccccttg 306  Q
    ||||||||||||||||||||||||||||||||    
T  29486255 atattttttggggtagccaaggctaccccttg 29486224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 11 - 144
Target Start/End: Original strand, 31216217 - 31216346
Alignment:
Q  11 caaaggataaaaattgacaatagctatttaaaaaagttgtgtaaaatgcatttcaagaaaccaattttatccataattgaccgtttactaaatagattaa 110  Q
    |||| ||||||| |||| ||||||||||||||| |||||   ||||||  ||||||||| |||||||||||||||| ||||  ||||| |||||||||||    
T  31216217 caaatgataaaacttgaaaatagctatttaaaatagttggacaaaatgtgtttcaagaagccaattttatccataaatgactatttacaaaatagattaa 31216316  T
Q  111 taatgtcttttccaatgtaaaacaaataggttat 144  Q
    ||   | ||||||||||| | |||||||||||||    
T  31216317 ta---tattttccaatgt-acacaaataggttat 31216346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 204 - 303
Target Start/End: Original strand, 904253 - 904352
Alignment:
Q  204 tttggggtagctcaatgtttattatttggggtagccgaatattaatttacaccaacttattaaagattaatatattttttggggtagccaaggctacccc 303  Q
    |||||||||||||||| ||||||||||||||||||  ||| | | |||| | ||||  ||| |||| |||| |||||||||||||||| |||||||||||    
T  904253 tttggggtagctcaatatttattatttggggtagctaaatgtaattttatatcaaccaattcaagaataatttattttttggggtagcaaaggctacccc 904352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 35 - 179
Target Start/End: Original strand, 903975 - 904115
Alignment:
Q  35 tatttaaaaaagttgtgtaaaatgcatttcaagaaaccaattttatccataattgaccgtttactaaatagattaataatgtcttttccaatgtaaaaca 134  Q
    |||||||||||  || | |||||| |||| |||||   ||||||||||||||||||||||||| |||||| |||| |||||  |||| |||||| |||||    
T  903975 tatttaaaaaatgtgggcaaaatgtattttaagaagtaaattttatccataattgaccgtttaataaataaattattaatg--tttttcaatgt-aaaca 904071  T
Q  135 aataggttatttgcaagaaactcaatgtccatttaatttgtttat 179  Q
    || | ||||||| ||| ||||| | ||||| ||||||||||||||    
T  904072 aacaagttattttcaa-aaacttattgtccttttaatttgtttat 904115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 101 - 180
Target Start/End: Complemental strand, 34729935 - 34729857
Alignment:
Q  101 aatagattaataatgtcttttccaatgtaaaacaaataggttatttgcaagaaactcaatgtccatttaatttgtttatg 180  Q
    |||||||||||||||||||||  ||||| ||  ||||||||||||||||||||||||| ||| ||||||| |||| ||||    
T  34729935 aatagattaataatgtctttttaaatgttaat-aaataggttatttgcaagaaactcattgtacatttaacttgtctatg 34729857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 175 - 305
Target Start/End: Original strand, 22956637 - 22956766
Alignment:
Q  175 tttatgttaattttcgacaactgaatttgtttggggtagctcaatgtttattatttggggtagccgaatattaatttacaccaacttattaaagattaat 274  Q
    ||||||||| |||| | ||||| || ||||||||||||||||||| |||||||||||||||||| | ||||  ||  | ||||||| ||  |||| ||||    
T  22956637 tttatgttatttttgg-caactaaacttgtttggggtagctcaatttttattatttggggtagctggatatagatacataccaactaatacaagaataat 22956735  T
Q  275 atattttttggggtagccaaggctacccctt 305  Q
       |||||| ||||||||||| |||||||||    
T  22956736 tattttttttgggtagccaagactacccctt 22956766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 175 - 305
Target Start/End: Complemental strand, 23831755 - 23831626
Alignment:
Q  175 tttatgttaattttcgacaactgaatttgtttggggtagctcaatgtttattatttggggtagccgaatattaatttacaccaacttattaaagattaat 274  Q
    ||||||||| |||| | ||||| || ||||||||||||||||||| |||||||||||||||||| | ||||  ||  | ||||||| ||  |||| ||||    
T  23831755 tttatgttatttttgg-caactaaacttgtttggggtagctcaatttttattatttggggtagctggatatagatacataccaactaatacaagaataat 23831657  T
Q  275 atattttttggggtagccaaggctacccctt 305  Q
       |||||| ||||||||||| |||||||||    
T  23831656 tattttttttgggtagccaagactacccctt 23831626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 182 - 252
Target Start/End: Complemental strand, 24428692 - 24428622
Alignment:
Q  182 taattttcgacaactgaatttgtttggggtagctcaatgtttattatttggggtagccgaatattaattta 252  Q
    ||||||||| ||||||||||||||| |||||  |||||||||||||||| ||||| ||| |||| ||||||    
T  24428692 taattttcggcaactgaatttgtttagggtaattcaatgtttattatttagggtaaccggatataaattta 24428622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 175 - 235
Target Start/End: Original strand, 8560093 - 8560153
Alignment:
Q  175 tttatgttaattttcgacaactgaatttgtttggggtagctcaatgtttattatttggggt 235  Q
    |||||||||||||||| ||||  || || |||||||||||||||| |||||||||||||||    
T  8560093 tttatgttaattttcggcaaccaaacttatttggggtagctcaatatttattatttggggt 8560153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 266 - 304
Target Start/End: Complemental strand, 27673880 - 27673842
Alignment:
Q  266 aagattaatatattttttggggtagccaaggctacccct 304  Q
    |||| |||||| |||||||||||||||||||||||||||    
T  27673880 aagaataatattttttttggggtagccaaggctacccct 27673842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 72 - 147
Target Start/End: Original strand, 8559901 - 8559972
Alignment:
Q  72 caattttatccataattgaccgtttactaaatagattaataatgtcttttccaatgtaaaacaaataggttatttg 147  Q
    |||||||||||||||||||  ||||| |||| |||||| ||||||||||| |||||||||   |||||||||||||    
T  8559901 caattttatccataattgattgtttaataaa-agattactaatgtctttt-caatgtaaa--caataggttatttg 8559972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 299; Significance: 1e-168; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 11 - 329
Target Start/End: Complemental strand, 40763982 - 40763664
Alignment:
Q  11 caaaggataaaaattgacaatagctatttaaaaaagttgtgtaaaatgcatttcaagaaaccaattttatccataattgaccgtttactaaatagattaa 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40763982 caaaggataaaaattgacaatagctatttaaaaaagttgtgtaaaatgcatttcaagaaaccaattttatccataattgaccgtttactaaatagattaa 40763883  T
Q  111 taatgtcttttccaatgtaaaacaaataggttatttgcaagaaactcaatgtccatttaatttgtttatgttaattttcgacaactgaatttgtttgggg 210  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  40763882 taatgttttttccaatgtaaaacaaataggttatttgcaagaaactcaatgtccatttaatttgtttatgttaattttcgacaactgaatttgtttggga 40763783  T
Q  211 tagctcaatgtttattatttggggtagccgaatattaatttacaccaacttattaaagattaatatattttttggggtagccaaggctaccccttgtcaa 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||    
T  40763782 tagctcaatgtttattatttggggtagccgaatattaatttacaccaacttattaaagattaatatattttttggggtaaccaaggctacctcttgtcaa 40763683  T
Q  311 tgaagggatgcgcccctgc 329  Q
    ||||||| |||||||||||    
T  40763682 tgaagggttgcgcccctgc 40763664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 11 - 328
Target Start/End: Original strand, 20843116 - 20843432
Alignment:
Q  11 caaaggataaaaattgacaatagctatttaaaaaagttgtgtaaaatgcatttcaagaaaccaattttatccataattgaccgtttactaaatagattaa 110  Q
    |||||||||| |||| ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |||| |||||||||||||||||    
T  20843116 caaaggataagaattaacaatagctatttaaaaaagttgggtaaaatgcatttcaagaagccaattttatccataatagaccatttactaaatagattaa 20843215  T
Q  111 taatgtcttttccaatgtaaaacaaataggttatttgcaagaaactcaatgtccatttaatttgtttatgttaattttcgacaactgaatttgtttgggg 210  Q
    ||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| ||||||||| ||  |||||||||||||||||||||||||    
T  20843216 taatgtcttttccaatgtaaa-caaataggttatttgcaagaaattcaatgtccatttaaattgtttatgctagctttcgacaactgaatttgtttgggg 20843314  T
Q  211 tagctcaatgtttattatttggggtagccgaatattaatttacaccaacttattaaagattaatatattttttggggtagccaaggctaccccttgtcaa 310  Q
    |||||||||||||||||||||||||||||||| || |||||| ||||||  |||||| |||||||||||||||||||||||||||||||||||||| |||    
T  20843315 tagctcaatgtttattatttggggtagccgaaaataaatttataccaaccaattaaatattaatatattttttggggtagccaaggctaccccttgccaa 20843414  T
Q  311 tgaagggatgcgcccctg 328  Q
    | ||||| | ||||||||    
T  20843415 taaagggctacgcccctg 20843432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 173; E-Value: 8e-93
Query Start/End: Original strand, 12 - 329
Target Start/End: Original strand, 3458006 - 3458324
Alignment:
Q  12 aaaggataaaaattgacaatagctatttaaaaaagttgtgtaaaatgcatttcaagaaaccaattttatccataattgaccgtttactaaatagattaat 111  Q
    |||||||||||||||||||   ||||||||||| |||| |||||||  |||||||||||||||||||||| |||||||||||||||||| ||| ||||||    
T  3458006 aaaggataaaaattgacaacgactatttaaaaaggttgggtaaaataaatttcaagaaaccaattttatctataattgaccgtttactagataaattaat 3458105  T
Q  112 aatgtcttttccaatgtaaaacaaataggttatttgcaagaaactcaatgtccatttaatttgtttatgttaattttcgacaactgaatttgtttgggg- 210  Q
    |||||||| |||| ||| ||||||||| ||||||||||||||||||||| ||||||||||||||||||| ||||||||| |||||||||||  ||||||     
T  3458106 aatgtcttctccagtgt-aaacaaataagttatttgcaagaaactcaatatccatttaatttgtttatgctaattttcggcaactgaatttacttggggt 3458204  T
Q  211 -tagctcaatgtttattatttggggtagccgaatattaatttacaccaacttattaaagattaatatattttttggggtagccaaggctaccccttgtca 309  Q
     || |||||| |||||||| |||||||||||||||| |||||| |||||   |||||||||||||||||||||| |||||||||||||||||  ||| ||    
T  3458205 atatctcaatatttattatatggggtagccgaatataaatttagaccaaacaattaaagattaatatatttttttgggtagccaaggctacctgttgcca 3458304  T
Q  310 atgaagggatgcgcccctgc 329  Q
    |||||||| | |||||||||    
T  3458305 atgaagggctacgcccctgc 3458324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 17 - 129
Target Start/End: Original strand, 52403212 - 52403324
Alignment:
Q  17 ataaaaattgacaatagctatttaaaaaagttgtgtaaaatgcatttcaagaaaccaattttatccataattgaccgtttactaaatagattaataatgt 116  Q
    |||||||||||| ||||||||||||||||||||  |||||||  ||||||||| |||||||||||||||| ||||  ||||| ||||||||||||||| |    
T  52403212 ataaaaattgacgatagctatttaaaaaagttggataaaatgtgtttcaagaacccaattttatccataaatgactatttacaaaatagattaataatat 52403311  T
Q  117 cttttccaatgta 129  Q
     ||||||||||||    
T  52403312 attttccaatgta 52403324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 175 - 304
Target Start/End: Complemental strand, 16152191 - 16152063
Alignment:
Q  175 tttatgttaattttcgacaactgaatttgtttggggtagctcaatgtttattatttggggtagccgaatattaatttacaccaacttattaaagattaat 274  Q
    |||||| ||||||| | ||||| || || ||||||||||||||||||||||||||||||||||||| |||| ||| || ||| | | ||| |||| ||||    
T  16152191 tttatgctaatttttg-caactaaacttatttggggtagctcaatgtttattatttggggtagccggatataaatatataccgattaattcaagaataat 16152093  T
Q  275 atattttttggggtagccaaggctacccct 304  Q
    |  |||||||||||||||||||||||||||    
T  16152092 actttttttggggtagccaaggctacccct 16152063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 61 - 180
Target Start/End: Original strand, 17652934 - 17653051
Alignment:
Q  61 tttcaagaaaccaattttatccataattgaccgtttactaaatagattaataatgtcttttccaatgtaaaacaaataggttatttgcaagaaactcaat 160  Q
    ||||||||| ||||||| ||| |||||||   ||||| ||| |||||||||||||||||||| ||||| ||  ||||||||||||||||||||||||| |    
T  17652934 tttcaagaacccaatttcatcaataattgtttgtttaataa-tagattaataatgtcttttcaaatgttaat-aaataggttatttgcaagaaactcatt 17653031  T
Q  161 gtccatttaatttgtttatg 180  Q
    || |||||||||||| ||||    
T  17653032 gtacatttaatttgtctatg 17653051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 17 - 129
Target Start/End: Original strand, 11906529 - 11906641
Alignment:
Q  17 ataaaaattgacaatagctatttaaaaaagttgtgtaaaatgcatttcaagaaaccaattttatccataattgaccgtttactaaatagattaataatgt 116  Q
    |||||||||||| ||||||||||||||||||||  | |||||  ||||||||  |||||||||| ||||| ||||  ||||| ||||||||||||||| |    
T  11906529 ataaaaattgacgatagctatttaaaaaagttggatgaaatgtgtttcaagagcccaattttattcataaatgacaatttacaaaatagattaataatat 11906628  T
Q  117 cttttccaatgta 129  Q
     |||| |||||||    
T  11906629 atttttcaatgta 11906641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 175 - 303
Target Start/End: Complemental strand, 19795540 - 19795412
Alignment:
Q  175 tttatgttaattttcgacaactgaatttgtttggggtagctcaatgtttattatttggggtagccgaatattaatttacaccaacttattaaagattaat 274  Q
    |||||||||||||||||||||  || ||||||||||||||||||| |||||||||||| |||||  ||||| ||| || ||||||  ||| |||| || |    
T  19795540 tttatgttaattttcgacaaccaaacttgtttggggtagctcaatatttattatttggagtagctaaatataaatatataccaaccaattcaagaatatt 19795441  T
Q  275 atattttttggggtagccaaggctacccc 303  Q
     | | |||||||||||| | |||||||||    
T  19795440 ttttattttggggtagcaagggctacccc 19795412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 53 - 175
Target Start/End: Complemental strand, 16152437 - 16152317
Alignment:
Q  53 aaaatgcatttcaagaaaccaattttatccataattgaccgtttactaaatagattaataatgtcttttccaatgtaaaacaaataggttatttgcaaga 152  Q
    ||||||||||| ||||| ||||||| ||| ||||||| | ||||| ||| ||||||||||||| |||||  ||||||||  ||||| |||||||||||||    
T  16152437 aaaatgcatttgaagaacccaatttcatcaataattgtctgtttaataa-tagattaataatgactttttaaatgtaaat-aaatatgttatttgcaaga 16152340  T
Q  153 aactcaatgtccatttaatttgt 175  Q
    |||||| ||||  ||||||||||    
T  16152339 aactcattgtctgtttaatttgt 16152317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 11 - 180
Target Start/End: Complemental strand, 29648590 - 29648421
Alignment:
Q  11 caaaggataaaaattgacaatagctatttaaaaaagttgtgtaaaatgcatttcaagaaaccaattttatccataat--tgaccgtttactaaatagatt 108  Q
    ||||| ||||||||||||||||| |||| | |||||||| | |||||| |||| |||||  ||||||||||||||||  |||  |||||||||||| |||    
T  29648590 caaagaataaaaattgacaatagttatt-agaaaagttgagcaaaatggattttaagaagtcaattttatccataatattgattgtttactaaataaatt 29648492  T
Q  109 aataatgtcttttccaatgtaaaacaaataggttatttgcaagaaactcaatgtccatttaatttgtttatg 180  Q
    |||||| |||||| |||| | ||||||| |  | |||||||| ||||  | ||||| ||||||||| |||||    
T  29648491 aataatctctttttcaatat-aaacaaagaaatcatttgcaataaacctattgtccgtttaatttgattatg 29648421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 20 - 179
Target Start/End: Original strand, 35106430 - 35106584
Alignment:
Q  20 aaaattgacaatagctatttaaaaaagttgtgtaaaatgcatttcaagaaaccaattttatccataattgaccgtttactaaatagattaataatgtctt 119  Q
    ||||||||||| || ||||||||||| ||| | ||||   |||| |||||  |||||||||||||||||||| ||||| ||||||||||| |||||  ||    
T  35106430 aaaattgacaaaag-tatttaaaaaatttgggcaaaacatattttaagaagtcaattttatccataattgactgtttaataaatagattattaatg--tt 35106526  T
Q  120 ttccaatgtaaaacaaataggttatttgcaagaaactcaatgtccatttaatttgtttat 179  Q
    || |||||| ||| ||| |||| |||| ||| ||||| | ||||| ||||||||||||||    
T  35106527 tttcaatgt-aaagaaacaggtaattttcaa-aaacttattgtccttttaatttgtttat 35106584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 115 - 180
Target Start/End: Complemental strand, 21296078 - 21296014
Alignment:
Q  115 gtcttttccaatgtaaaacaaataggttatttgcaagaaactcaatgtccatttaatttgtttatg 180  Q
    |||||||| ||||||||  ||||||||||||||||||||||||| ||| |||||||||||| ||||    
T  21296078 gtcttttcaaatgtaaat-aaataggttatttgcaagaaactcattgtacatttaatttgtctatg 21296014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 16 - 146
Target Start/End: Complemental strand, 38171603 - 38171470
Alignment:
Q  16 gataaaaattgacaatagctatttaaaaaagttgtgtaaaatgcatttcaagaaaccaattttatccataa----ttgaccgtttactaaatagattaat 111  Q
    |||||||||| | |||||||||| ||||||||||   ||||||  ||| || ||  |||||||||||||||    ||||  |||||| ||||||||||||    
T  38171603 gataaaaattaaaaatagctattcaaaaaagttgaacaaaatgtgttttaaaaagtcaattttatccataaatgattgattgtttacaaaatagattaat 38171504  T
Q  112 aatgtcttttccaatgtaaaacaaataggttattt 146  Q
    ||||||||||| ||| | | |||||||||||||||    
T  38171503 aatgtcttttctaat-ttacacaaataggttattt 38171470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 115 - 180
Target Start/End: Complemental strand, 46823950 - 46823886
Alignment:
Q  115 gtcttttccaatgtaaaacaaataggttatttgcaagaaactcaatgtccatttaatttgtttatg 180  Q
    |||||||| ||||||||  ||||||||||||||||||||||||| ||| |||||||||||| ||||    
T  46823950 gtcttttcaaatgtaaat-aaataggttatttgcaagaaactcattgtacatttaatttgtctatg 46823886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 199 - 245
Target Start/End: Original strand, 11033972 - 11034018
Alignment:
Q  199 atttgtttggggtagctcaatgtttattatttggggtagccgaatat 245  Q
    ||||||||||||||||||||||||||||||||| |||| ||| ||||    
T  11033972 atttgtttggggtagctcaatgtttattatttgaggtaaccggatat 11034018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 184 - 238
Target Start/End: Complemental strand, 29123482 - 29123428
Alignment:
Q  184 attttcgacaactgaatttgtttggggtagctcaatgtttattatttggggtagc 238  Q
    ||||||||||||  ||||| |||||| ||||||||| ||||||||||||||||||    
T  29123482 attttcgacaacgaaatttatttgggatagctcaatatttattatttggggtagc 29123428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 175 - 259
Target Start/End: Complemental strand, 35061948 - 35061864
Alignment:
Q  175 tttatgttaattttcgacaactgaatttgtttggggtagctcaatgtttattatttggggtagccgaatattaatttacaccaac 259  Q
    |||||||||||||||||||||  || || ||| | |||||||||| ||||||||||| ||||||  ||||| ||| || ||||||    
T  35061948 tttatgttaattttcgacaaccaaacttatttagagtagctcaatatttattatttgaggtagctaaatataaatatataccaac 35061864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 73 - 116
Target Start/End: Original strand, 36312281 - 36312324
Alignment:
Q  73 aattttatccataattgaccgtttactaaatagattaataatgt 116  Q
    ||||||||||||||||||| ||||| ||||||||||| ||||||    
T  36312281 aattttatccataattgactgtttaataaatagattattaatgt 36312324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 185 - 305
Target Start/End: Original strand, 52403473 - 52403595
Alignment:
Q  185 ttttcgacaactgaatttgtttggggtagctcaatgtttattatttggggtagccgaatattaatttacaccaacttattaaagattaatat--attttt 282  Q
    |||| |||||||||| || ||| ||||| ||||||||||||||||| ||||||| | ||||  ||  | ||||||| ||  |||| ||||||   |||||    
T  52403473 tttttgacaactgaacttatttagggtatctcaatgtttattatttagggtagctggatatagatacataccaactaatacaagaataatattatttttt 52403572  T
Q  283 tggggtagccaaggctacccctt 305  Q
    | ||||||| |||||||||||||    
T  52403573 ttgggtagctaaggctacccctt 52403595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 72 - 147
Target Start/End: Complemental strand, 19795732 - 19795661
Alignment:
Q  72 caattttatccataattgaccgtttactaaatagattaataatgtcttttccaatgtaaaacaaataggttatttg 147  Q
    |||||||||||||||||||  ||||| |||| |||||| ||||||||||| |||||||||   |||||||||||||    
T  19795732 caattttatccataattgattgtttaataaa-agattactaatgtctttt-caatgtaaa--caataggttatttg 19795661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 73 - 153
Target Start/End: Complemental strand, 37175573 - 37175495
Alignment:
Q  73 aattttatccataattgaccgtttactaaatagattaataatgtcttttccaatgtaaaacaaataggttatttgcaagaa 153  Q
    |||||||||||||||| |  | ||| ||||||||||| |||||||||||  ||||| ||| |||||| |||||||||||||    
T  37175573 aattttatccataattaaatgattaataaatagattattaatgtctttt-taatgt-aaataaatagattatttgcaagaa 37175495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 290; Significance: 1e-162; HSPs: 29)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 11 - 328
Target Start/End: Complemental strand, 13465627 - 13465310
Alignment:
Q  11 caaaggataaaaattgacaatagctatttaaaaaagttgtgtaaaatgcatttcaagaaaccaattttatccataattgaccgtttactaaatagattaa 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13465627 caaaggataaaaattgacaatagctatttaaaaaagttgtgtaaaatgcatttcaagaaaccaattttatccataattgaccgtttactaaatagattaa 13465528  T
Q  111 taatgtcttttccaatgtaaaacaaataggttatttgcaagaaactcaatgtccatttaatttgtttatgttaattttcgacaactgaatttgtttgggg 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||  |||||||||||||| |||    
T  13465527 taatgtcttttccaatgtaaaacaaataggttatttgcaagaaactcaatgtccatttaatttgtttatgttaaatttcggaaactgaatttgtttaggg 13465428  T
Q  211 tagctcaatgtttattatttggggtagccgaatattaatttacaccaacttattaaagattaatatattttttggggtagccaaggctaccccttgtcaa 310  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13465427 tagctcaatgttaattatttggggtagccgaatattaatttacaccaacttattaaagattaatatattttttggggtagccaaggctaccccttgtcaa 13465328  T
Q  311 tgaagggatgcgcccctg 328  Q
    ||||||| ||| ||||||    
T  13465327 tgaagggttgcacccctg 13465310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 11 - 328
Target Start/End: Complemental strand, 28491484 - 28491167
Alignment:
Q  11 caaaggataaaaattgacaatagctatttaaaaaagttgtgtaaaatgcatttcaagaaaccaattttatccataattgaccgtttactaaatagattaa 110  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28491484 caaaggataaaaattgacaatagctatttaaaaaatttgtgtaaaatgcatttcaagaaaccaattttatccataattgaccgtttactaaatagattaa 28491385  T
Q  111 taatgtcttttccaatgtaaaacaaataggttatttgcaagaaactcaatgtccatttaatttgtttatgttaattttcgacaactgaatttgtttgggg 210  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||     
T  28491384 taatgtcttttccaatgtaaaataaataggttatttgcaagaaactcaatgtccatttaatttgtttatgttaattttcggcaactgaatttgtttggga 28491285  T
Q  211 tagctcaatgtttattatttggggtagccgaatattaatttacaccaacttattaaagattaatatattttttggggtagccaaggctaccccttgtcaa 310  Q
    ||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28491284 tagctcaatgtttattatttggggtagccgagtatcaatttacaccaacttattaaagattaatatattttttggggtagccaaggctaccccttgtcaa 28491185  T
Q  311 tgaagggatgcgcccctg 328  Q
    ||||||| ||||||||||    
T  28491184 tgaagggctgcgcccctg 28491167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 85 - 328
Target Start/End: Original strand, 25439566 - 25439806
Alignment:
Q  85 aattgaccgtttactaaatagattaataatgtcttttccaatgtaaaacaaataggttatttgcaagaaactcaatgtccatttaatttgtttatgttaa 184  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||    
T  25439566 aattgaccgtttactaaatagattaataatgtcttttccaatgtaaaacaaataggtt---tgcaagaaactcaatgtccatttaatttgtttatgttaa 25439662  T
Q  185 ttttcgacaactgaatttgtttggggtagctcaatgtttattatttggggtagccgaatattaatttacaccaacttattaaagattaatatattttttg 284  Q
    |||||| |||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25439663 ttttcggcaactgaatttgttcggggtagctcaatatttattatttggggtagccgaatattaatttacaccaacttattaaagattaatatattttttg 25439762  T
Q  285 gggtagccaaggctaccccttgtcaatgaagggatgcgcccctg 328  Q
    ||||||||||||||||||||||||||||||||| ||||||||||    
T  25439763 gggtagccaaggctaccccttgtcaatgaagggctgcgcccctg 25439806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 11 - 180
Target Start/End: Complemental strand, 34659561 - 34659394
Alignment:
Q  11 caaaggataaaaattgacaatagctatttaaaaaagttgtgtaaaatgcatttcaagaaaccaattttatccataattgaccgtttactaaatagattaa 110  Q
    ||||||| ||||||| ||||| |||||| | |||| |||   ||||||||||||||||||||||||||||| ||||||||  ||||||||||||||||||    
T  34659561 caaaggacaaaaatttacaatggctatt-agaaaatttggacaaaatgcatttcaagaaaccaattttatctataattgagtgtttactaaatagattaa 34659463  T
Q  111 taatgtcttttccaatgtaaaacaaataggttatttgcaagaaactcaatgtccatttaatttgtttatg 180  Q
    |||||| ||||  ||||| |||| |||| ||||||||||| ||||||| | |||||||||||||||||||    
T  34659462 taatgtatttttaaatgt-aaactaataagttatttgcaataaactcattatccatttaatttgtttatg 34659394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 33 - 180
Target Start/End: Original strand, 29715764 - 29715909
Alignment:
Q  33 gctatttaaaaaagttgtgtaaaatgcatttcaagaaaccaattttatccataattgaccgtttactaaatagattaataatgtcttttccaatgtaaaa 132  Q
    |||||||| ||| |||| | ||||||| ||||||||| ||||||| ||| ||||| ||| ||||| ||| |||||||||||||||||||| ||||||||     
T  29715764 gctatttagaaacgttgggcaaaatgcgtttcaagaacccaatttcatcaataatagactgtttaataa-tagattaataatgtcttttcaaatgtaaat 29715862  T
Q  133 caaataggttatttgcaagaaactcaatgtccatttaatttgtttatg 180  Q
     ||||||||||||| |||||||||||  ||||||||||||||| ||||    
T  29715863 -aaataggttatttacaagaaactcaccgtccatttaatttgtctatg 29715909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 81 - 180
Target Start/End: Complemental strand, 37202921 - 37202823
Alignment:
Q  81 ccataattgaccgtttactaaatagattaataatgtcttttccaatgtaaaacaaataggttatttgcaagaaactcaatgtccatttaatttgtttatg 180  Q
    ||||| ||| |||||||||||||||||||||||||| |||||  ||||||| ||||||| |||||||||||||||| |||||||||||||||||||||||    
T  37202921 ccatagttggccgtttactaaatagattaataatgttttttctgatgtaaa-caaatagattatttgcaagaaactgaatgtccatttaatttgtttatg 37202823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 17 - 129
Target Start/End: Complemental strand, 25592294 - 25592182
Alignment:
Q  17 ataaaaattgacaatagctatttaaaaaagttgtgtaaaatgcatttcaagaaaccaattttatccataattgaccgtttactaaatagattaataatgt 116  Q
    |||||||||||| ||||||||||||||||||||  |||||||  ||||||||| |||||||||||||||| ||||  ||||| ||||||||||||||| |    
T  25592294 ataaaaattgacgatagctatttaaaaaagttggataaaatgtgtttcaagaacccaattttatccataaatgactatttacaaaatagattaataatat 25592195  T
Q  117 cttttccaatgta 129  Q
     |||| |||||||    
T  25592194 attttgcaatgta 25592182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 176 - 306
Target Start/End: Complemental strand, 37202700 - 37202571
Alignment:
Q  176 ttatgttaattttcgacaactgaatttgtttggggtagctcaatgtttattatttggggtagccgaatattaatttacaccaacttattaaagattaata 275  Q
    ||||||||||||||||||||| |||||||||| | | ||| ||| |||||||||||||| ||| | |||| ||| || ||||||  ||| |||| |||||    
T  37202700 ttatgttaattttcgacaactaaatttgtttgagatggcttaatatttattatttggggcagcaggatataaatatataccaaccaattgaagaataata 37202601  T
Q  276 tattttttggggtagccaaggctaccccttg 306  Q
    |||||||| ||||||||||||||||||||||    
T  37202600 tatttttt-gggtagccaaggctaccccttg 37202571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 53 - 180
Target Start/End: Complemental strand, 759036 - 758911
Alignment:
Q  53 aaaatgcatttcaagaaaccaattttatccataattgaccgtttactaaatagattaataatgtcttttccaatgtaaaacaaataggttatttgcaaga 152  Q
    ||||| ||||||||||| | ||||| ||| |||||||   ||||| ||| |||||||||||||||||||| ||||||||  |||||| ||||||||||||    
T  759036 aaaatacatttcaagaaccgaatttcatcaataattgtttgtttaataa-tagattaataatgtcttttcaaatgtaaat-aaatagattatttgcaaga 758939  T
Q  153 aactcaatgtccatttaatttgtttatg 180  Q
    |||||| ||| |||||||||||| ||||    
T  758938 aactcattgtacatttaatttgtctatg 758911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 101 - 180
Target Start/End: Original strand, 46211663 - 46211741
Alignment:
Q  101 aatagattaataatgtcttttccaatgtaaaacaaataggttatttgcaagaaactcaatgtccatttaatttgtttatg 180  Q
    |||||||||||||||||||||| ||||||||  ||||||||||||||||||||||||| ||| |||||||||||| ||||    
T  46211663 aatagattaataatgtcttttcaaatgtaaat-aaataggttatttgcaagaaactcattgtacatttaatttgtctatg 46211741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 61 - 180
Target Start/End: Original strand, 48609052 - 48609169
Alignment:
Q  61 tttcaagaaaccaattttatccataattgaccgtttactaaatagattaataatgtcttttccaatgtaaaacaaataggttatttgcaagaaactcaat 160  Q
    ||||||||| ||||||| ||| |||||||   ||||| ||| |||||||||||||| ||||| ||||| ||  ||||||||||||||||||||||||| |    
T  48609052 tttcaagaacccaatttcatcaataattgtttgtttaataa-tagattaataatgtgttttcaaatgttaat-aaataggttatttgcaagaaactcatt 48609149  T
Q  161 gtccatttaatttgtttatg 180  Q
    || |||||||||||| ||||    
T  48609150 gtacatttaatttgtctatg 48609169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 9 - 114
Target Start/End: Complemental strand, 14047188 - 14047081
Alignment:
Q  9 agcaaaggataaaaattgacaatagctatttaaaaaa--gttgtgtaaaatgcatttcaagaaaccaattttatccataattgaccgtttactaaataga 106  Q
    |||||| |||||||||||||| || ||||||||||||  ||||   ||||||  ||||||||||||||||||| |||||| ||||  ||||| |||||||    
T  14047188 agcaaatgataaaaattgacagtaactatttaaaaaaaagttggacaaaatgtgtttcaagaaaccaattttagccataaatgactatttacaaaataga 14047089  T
Q  107 ttaataat 114  Q
    ||||||||    
T  14047088 ttaataat 14047081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 9 - 114
Target Start/End: Complemental strand, 14357218 - 14357111
Alignment:
Q  9 agcaaaggataaaaattgacaatagctatttaaaaaa--gttgtgtaaaatgcatttcaagaaaccaattttatccataattgaccgtttactaaataga 106  Q
    |||||| |||||||||||||| || ||||||||||||  ||||   ||||||  ||||||||||||||||||| |||||| ||||  ||||| |||||||    
T  14357218 agcaaatgataaaaattgacagtaactatttaaaaaaaagttggacaaaatgtgtttcaagaaaccaattttagccataaatgactatttacaaaataga 14357119  T
Q  107 ttaataat 114  Q
    ||||||||    
T  14357118 ttaataat 14357111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 175 - 303
Target Start/End: Complemental strand, 45855470 - 45855342
Alignment:
Q  175 tttatgttaattttcgacaactgaatttgtttggggtagctcaatgtttattatttggggtagccgaatattaatttacaccaacttattaaagattaat 274  Q
    |||||||||||||||||||||  || || |||||||||||||||| ||||||||||||||||||  ||||| ||| || ||| ||  ||| |||| || |    
T  45855470 tttatgttaattttcgacaaccaaacttatttggggtagctcaatatttattatttggggtagctaaatataaatatataccgaccaattcaagaatatt 45855371  T
Q  275 atattttttggggtagccaaggctacccc 303  Q
     | | |||||||||||| | |||||||||    
T  45855370 ttttcttttggggtagcaagggctacccc 45855342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 184 - 238
Target Start/End: Complemental strand, 27097104 - 27097050
Alignment:
Q  184 attttcgacaactgaatttgtttggggtagctcaatgtttattatttggggtagc 238  Q
    ||||||||||||  |||||||||||||||||||||| ||||||||||||||||||    
T  27097104 attttcgacaaccaaatttgtttggggtagctcaatatttattatttggggtagc 27097050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 184 - 238
Target Start/End: Original strand, 27181199 - 27181253
Alignment:
Q  184 attttcgacaactgaatttgtttggggtagctcaatgtttattatttggggtagc 238  Q
    ||||||||||||  |||||||||||||||||||||| ||||||||||||||||||    
T  27181199 attttcgacaaccaaatttgtttggggtagctcaatatttattatttggggtagc 27181253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 198 - 244
Target Start/End: Original strand, 29716051 - 29716097
Alignment:
Q  198 aatttgtttggggtagctcaatgtttattatttggggtagccgaata 244  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||    
T  29716051 aatttgtttggggtagctcaatatttattatttggggtagccgaata 29716097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 175 - 329
Target Start/End: Original strand, 40253844 - 40253998
Alignment:
Q  175 tttatgttaattttcgacaactgaatttgtttggggtagctcaatgtttattatttggggtagccgaatattaatttacaccaacttattaaagattaat 274  Q
    ||||||||||||||  |||| | ||||| |||||||||||| ||| ||| ||||||||| ||||  ||||| ||   | |||||| |||| ||||  |||    
T  40253844 tttatgttaatttttaacaaataaatttatttggggtagctaaatattttttatttgggatagctaaatataaaaacataccaacatattcaagaacaat 40253943  T
Q  275 atattttttggggtagccaaggctaccccttgtcaatgaagggatgcgcccctgc 329  Q
    || |||||||||||||||| ||||||| | ||  ||||||||||  |||||||||    
T  40253944 attttttttggggtagccatggctacctcatgctaatgaagggaaccgcccctgc 40253998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 11 - 56
Target Start/End: Original strand, 25439521 - 25439566
Alignment:
Q  11 caaaggataaaaattgacaatagctatttaaaaaagttgtgtaaaa 56  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||    
T  25439521 caaaggataaaaattaacaatagctatttaaaaaagttgtgtaaaa 25439566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 175 - 292
Target Start/End: Complemental strand, 25592035 - 25591918
Alignment:
Q  175 tttatgttaattttcgacaactgaatttgtttggggtagctcaatgtttattatttggggtagccgaatattaatttacaccaacttattaaagattaat 274  Q
    ||||||||  |||| | |||||||| |||||||| |||||||||| |||||||||||||||||| | ||||  ||  | ||||||| ||  |||| ||||    
T  25592035 tttatgttgttttttggcaactgaacttgtttggagtagctcaatatttattatttggggtagctggatatagatacataccaactaatacaagaataat 25591936  T
Q  275 atattttttggggtagcc 292  Q
    || |||||||||||||||    
T  25591935 attttttttggggtagcc 25591918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 182 - 245
Target Start/End: Complemental strand, 34658992 - 34658929
Alignment:
Q  182 taattttcgacaactgaatttgtttggggtagctcaatgtttattatttggggtagccgaatat 245  Q
    |||||||| ||||||||| |||||||| |||||||||||| |||||||| ||||||| ||||||    
T  34658992 taattttcaacaactgaacttgtttggagtagctcaatgtatattatttagggtagcggaatat 34658929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 17 - 153
Target Start/End: Complemental strand, 37049269 - 37049134
Alignment:
Q  17 ataaaaattgacaatagctatttaaaaaagttgtgtaaaa--tgcatttcaagaaaccaattttatccataattgaccgtttactaaatagattaataat 114  Q
    |||||||||||||| |  ||||||||||||||| | ||||  ||  ||| ||||| ||||||||||   ||||| || ||||| |||| |||||||||||    
T  37049269 ataaaaattgacaacaaatatttaaaaaagttgggcaaaacatgttttt-aagaagccaattttatttgtaattaactgtttaataaaaagattaataat 37049171  T
Q  115 gtcttttccaatgtaaaacaaataggttatttgcaagaa 153  Q
    ||||||| |||||| |||||||||||||||||| |||||    
T  37049170 gtctttt-caatgt-aaacaaataggttatttgtaagaa 37049134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 101 - 158
Target Start/End: Original strand, 83617 - 83673
Alignment:
Q  101 aatagattaataatgtcttttccaatgtaaaacaaataggttatttgcaagaaactca 158  Q
    |||||||||||||||||||||| ||||| ||| ||||||||||||| |||||||||||    
T  83617 aatagattaataatgtcttttcaaatgt-aaataaataggttatttacaagaaactca 83673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 115 - 180
Target Start/End: Complemental strand, 39720025 - 39719961
Alignment:
Q  115 gtcttttccaatgtaaaacaaataggttatttgcaagaaactcaatgtccatttaatttgtttatg 180  Q
    |||||||| ||||||||  ||||||||||||||||||||||||| ||| |||||||||||| ||||    
T  39720025 gtcttttcaaatgtaaat-aaataggttatttgcaagaaactcattgtacatttaatttgtctatg 39719961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 73 - 121
Target Start/End: Original strand, 20926818 - 20926866
Alignment:
Q  73 aattttatccataattgaccgtttactaaatagattaataatgtctttt 121  Q
    ||||||||||||||||||| ||||| ||||||||||| |||||| ||||    
T  20926818 aattttatccataattgactgtttaataaatagattattaatgtttttt 20926866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 198 - 236
Target Start/End: Original strand, 20927083 - 20927121
Alignment:
Q  198 aatttgtttggggtagctcaatgtttattatttggggta 236  Q
    ||||| |||||||||||||||| ||||||||||||||||    
T  20927083 aatttatttggggtagctcaatatttattatttggggta 20927121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 96 - 150
Target Start/End: Original strand, 40253630 - 40253683
Alignment:
Q  96 tactaaatagattaataatgtcttttccaatgtaaaacaaataggttatttgcaa 150  Q
    ||||||||||| |||||||||||||| |||||| |||||||||  ||||||||||    
T  40253630 tactaaatagactaataatgtctttttcaatgt-aaacaaataaattatttgcaa 40253683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 17 - 49
Target Start/End: Original strand, 40253551 - 40253583
Alignment:
Q  17 ataaaaattgacaatagctatttaaaaaagttg 49  Q
    |||||||||||||||| ||||||||||||||||    
T  40253551 ataaaaattgacaataactatttaaaaaagttg 40253583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 108 - 156
Target Start/End: Complemental strand, 45228098 - 45228050
Alignment:
Q  108 taataatgtcttttccaatgtaaaacaaataggttatttgcaagaaact 156  Q
    |||||||||||||| |||||||||  ||||| |||||||| ||||||||    
T  45228098 taataatgtctttttcaatgtaaacaaaataagttatttgtaagaaact 45228050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 290; Significance: 1e-162; HSPs: 33)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 11 - 328
Target Start/End: Original strand, 30950737 - 30951054
Alignment:
Q  11 caaaggataaaaattgacaatagctatttaaaaaagttgtgtaaaatgcatttcaagaaaccaattttatccataattgaccgtttactaaatagattaa 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30950737 caaaggataaaaattgacaatagctatttaaaaaagttgtgtaaaatgcatttcaagaaaccaattttatccataattgaccgtttactaaatagattaa 30950836  T
Q  111 taatgtcttttccaatgtaaaacaaataggttatttgcaagaaactcaatgtccatttaatttgtttatgttaattttcgacaactgaatttgtttgggg 210  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  30950837 taatgtctttttcaatgtaaaacaaataggttatttgcaagaaactcaatgtccatttaatttgtttatgttaattttcggcaactgaatttgtttgggg 30950936  T
Q  211 tagctcaatgtttattatttggggtagccgaatattaatttacaccaacttattaaagattaatatattttttggggtagccaaggctaccccttgtcaa 310  Q
      ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30950937 atgctcaatgtttattatttggggtactcgaatattaatttacaccaacttattaaagattaatatattttttggggtagccaaggctaccccttgtcaa 30951036  T
Q  311 tgaagggatgcgcccctg 328  Q
    ||||||| ||||||||||    
T  30951037 tgaagggctgcgcccctg 30951054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 183; E-Value: 9e-99
Query Start/End: Original strand, 9 - 336
Target Start/End: Original strand, 29798978 - 29799305
Alignment:
Q  9 agcaaaggataaaaattgacaatagctatttaaaaaagttgtg--taaaatgcatttcaagaaaccaattttatccataattgaccgtttactaaataga 106  Q
    |||||||||||||||||||||||||||||||||     || ||  |||||||||||||||||| ||||||||||| ||| |||| | |||||||||| ||    
T  29798978 agcaaaggataaaaattgacaatagctatttaatttttttttgggtaaaatgcatttcaagaagccaattttatctatatttgatcatttactaaattga 29799077  T
Q  107 ttaataatgtcttttccaatgtaaaacaaataggttatttgcaagaaactcaatgtccatttaatttgtttatgttaattttcgacaactgaatttgttt 206  Q
    |||||||||||||| |||||||||| ||||||||||||||| |||||||||||| ||||||||||||||||||| || |||| | ||||||||||| |||    
T  29799078 ttaataatgtctttcccaatgtaaa-caaataggttatttgtaagaaactcaatatccatttaatttgtttatgctagtttttggcaactgaatttattt 29799176  T
Q  207 ggggtagctcaatgtttattatttggggtagccgaatattaatttacaccaacttattaaagattaatatattttttggggtagccaaggctaccccttg 306  Q
    || ||| |||||||||||||||||||||||||||||||| |||||| ||||||  |||||||||||||||||||||| ||||||||||||||||||||||    
T  29799177 ggagtaactcaatgtttattatttggggtagccgaatataaatttataccaaccaattaaagattaatatatttttt-gggtagccaaggctaccccttg 29799275  T
Q  307 tcaatgaagggatgcgcccctgcttgtaac 336  Q
     |||||||||| | ||||||||||| ||||    
T  29799276 ccaatgaagggctacgcccctgcttttaac 29799305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 329 - 479
Target Start/End: Original strand, 31032929 - 31033079
Alignment:
Q  329 cttgtaactgtcacaatcccacacctatgccttaatctctttcaacagaaaaggtctaataagattagctccatcctccatagaaattgttttaaaggat 428  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  31032929 cttgtaactgtcacaatcccacacctatgccttaatctctttcaacacaaaaggtctaataagattagctccattctccatagaaattgttttaaaggat 31033028  T
Q  429 atattccctacatctgatctagacaacattacctctataaaatgtgactga 479  Q
    | || ||||||| ||||||||||||||||||||||||||||||||||||||    
T  31033029 agatcccctacacctgatctagacaacattacctctataaaatgtgactga 31033079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 33 - 175
Target Start/End: Complemental strand, 11142837 - 11142697
Alignment:
Q  33 gctatttaaaaaagttgtgtaaaatgcatttcaagaaaccaattttatccataattgaccgtttactaaatagattaataatgtcttttccaatgtaaaa 132  Q
    |||||||| ||| |||| ||||||||  ||||||||| ||||||||||| ||||||| | ||||| ||| |||||||||||||||||||| ||||||||     
T  11142837 gctatttagaaacgttgggtaaaatgtgtttcaagaacccaattttatcaataattgtctgtttaataa-tagattaataatgtcttttcaaatgtaaat 11142739  T
Q  133 caaataggttatttgcaagaaactcaatgtccatttaatttgt 175  Q
     || ||||||||| |||||||||||| ||||||||||||||||    
T  11142738 gaa-taggttattcgcaagaaactcattgtccatttaatttgt 11142697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 11 - 169
Target Start/End: Original strand, 33240790 - 33240946
Alignment:
Q  11 caaaggataaaaattgacaatagctatttaaaaaagttgtgtaaaatgcatttcaagaaaccaattttatccataattgaccgtttactaaatagattaa 110  Q
    ||||||||| ||||||||||| |||||| | |||| ||    ||||||||||| || |||||||||||||||||||||||  ||||| ||||||||||||    
T  33240790 caaaggatagaaattgacaatggctatt-agaaaatttagacaaaatgcattttaaaaaaccaattttatccataattgagtgtttaataaatagattaa 33240888  T
Q  111 taatgtcttttccaatgtaaaacaaataggttatttgcaagaaactcaatgtccattta 169  Q
    |||||| ||||||||||| |||| ||||||| |||| ||| ||| ||||||||||||||    
T  33240889 taatgtattttccaatgt-aaactaataggtcattttcaataaattcaatgtccattta 33240946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 54 - 175
Target Start/End: Original strand, 10406128 - 10406247
Alignment:
Q  54 aaatgcatttcaagaaaccaattttatccataattgaccgtttactaaatagattaataatgtcttttccaatgtaaaacaaataggttatttgcaagaa 153  Q
    |||||| ||||||||| ||||||| ||| ||||||||| ||||| ||| |||||||||||||| ||||| ||||||||  ||||||||||||||||||||    
T  10406128 aaatgcgtttcaagaacccaatttcatcaataattgactgtttaataa-tagattaataatgttttttcgaatgtaaat-aaataggttatttgcaagaa 10406225  T
Q  154 actcaatgtccatttaatttgt 175  Q
    ||||| |||||||||| |||||    
T  10406226 actcactgtccatttagtttgt 10406247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 11 - 179
Target Start/End: Complemental strand, 47368049 - 47367882
Alignment:
Q  11 caaaggataaaaattgacaatagctatttaaaaaagttgtgtaaaatgcatttcaagaaaccaattttatccataattgaccgtttactaaatagattaa 110  Q
    |||| ||||||||||||||||| ||||||||||||||||   ||||||  |||||| ||  |||||||||||||| ||||  |||||| ||||| | | |    
T  47368049 caaatgataaaaattgacaatatctatttaaaaaagttggacaaaatgtgtttcaaaaaggcaattttatccatatttgattgtttacaaaatataatga 47367950  T
Q  111 taatgtcttttccaatgtaaaacaaataggttatttgcaagaaactcaatgtccatttaatttgtttat 179  Q
    ||||||||| |||||||| |||||| |||  ||||||||||||||||| || || ||| || |||||||    
T  47367949 taatgtcttctccaatgt-aaacaattagactatttgcaagaaactcattgcccgtttgatatgtttat 47367882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 33 - 175
Target Start/End: Complemental strand, 10178062 - 10177922
Alignment:
Q  33 gctatttaaaaaagttgtgtaaaatgcatttcaagaaaccaattttatccataattgaccgtttactaaatagattaataatgtcttttccaatgtaaaa 132  Q
    |||||||||||| || | | ||||||| |||||||||  |||||| ||| ||||||||| ||||| ||| |||||||||||||| ||||| ||||| ||     
T  10178062 gctatttaaaaacgtcgggcaaaatgcgtttcaagaactcaatttcatcaataattgactgtttaataa-tagattaataatgttttttcaaatgtgaat 10177964  T
Q  133 caaataggttatttgcaagaaactcaatgtccatttaatttgt 175  Q
     |||||||||||||||||||||||||  ||||||||| |||||    
T  10177963 -aaataggttatttgcaagaaactcaccgtccatttagtttgt 10177922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 21 - 142
Target Start/End: Original strand, 52110936 - 52111056
Alignment:
Q  21 aaattgacaatagctatttaaaaaagttgtgtaaaatgcatttcaagaaaccaattttatccataattgaccgtttactaaatagattaataatgtcttt 120  Q
    ||||| ||||||| |||||||||||||||   ||||| | ||| ||||| |||||||||| ||||||||||  ||||||||| | |||||||||||||||    
T  52110936 aaattaacaatagttatttaaaaaagttggacaaaatacgttttaagaagccaattttattcataattgactttttactaaacaaattaataatgtcttt 52111035  T
Q  121 tccaatgtaaaacaaataggtt 142  Q
    |||||| | |||||||||||||    
T  52111036 tccaatat-aaacaaataggtt 52111056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 83 - 163
Target Start/End: Complemental strand, 28403202 - 28403123
Alignment:
Q  83 ataattgaccgtttactaaatagattaataatgtcttttccaatgtaaaacaaataggttatttgcaagaaactcaatgtc 163  Q
    ||||||||||||||| ||||||||| ||||||||||||| |||||| |||||||||||||||||||| |||||||| ||||    
T  28403202 ataattgaccgtttattaaatagatcaataatgtctttttcaatgt-aaacaaataggttatttgcatgaaactcattgtc 28403123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 101 - 180
Target Start/End: Complemental strand, 44961548 - 44961470
Alignment:
Q  101 aatagattaataatgtcttttccaatgtaaaacaaataggttatttgcaagaaactcaatgtccatttaatttgtttatg 180  Q
    ||||||||||| |||||||||| ||||||||  ||||||||||||||||||||||||| |||||||||||||||| ||||    
T  44961548 aatagattaatgatgtcttttcaaatgtaaat-aaataggttatttgcaagaaactcattgtccatttaatttgtctatg 44961470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 177 - 296
Target Start/End: Complemental strand, 47367757 - 47367639
Alignment:
Q  177 tatgttaattttcgacaactgaatttgtttggggtagctcaatgtttattatttggggtagccgaatattaatttacaccaacttattaaagattaatat 276  Q
    |||| ||||||||||||| || || |||||||||||||||||||||||||||||| ||||||  ||||| |||  | ||||||| ||| || | ||| ||    
T  47367757 tatgctaattttcgacaattggatatgtttggggtagctcaatgtttattatttgaggtagcaaaatataaatacataccaactaattcaacaataa-at 47367659  T
Q  277 attttttggggtagccaagg 296  Q
    ||||||||||||||||||||    
T  47367658 attttttggggtagccaagg 47367639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 71 - 180
Target Start/End: Complemental strand, 19313508 - 19313401
Alignment:
Q  71 ccaattttatccataattgaccgtttactaaatagattaataatgtcttttccaatgtaaaacaaataggttatttgcaagaaactcaatgtccatttaa 170  Q
    ||||||| ||| ||||||||| ||||| ||| |||||||||||||||||||| ||||||||  ||||| ||||||||||||||||||| | || ||||||    
T  19313508 ccaatttcatcaataattgactgtttaataa-tagattaataatgtcttttcaaatgtaaat-aaataagttatttgcaagaaactcactatctatttaa 19313411  T
Q  171 tttgtttatg 180  Q
    ||||| ||||    
T  19313410 tttgtctatg 19313401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 175 - 304
Target Start/End: Complemental strand, 23614530 - 23614402
Alignment:
Q  175 tttatgttaattttcgacaactgaatttgtttggggtagctcaatgtttattatttggggtagccgaatattaatttacaccaacttattaaagattaat 274  Q
    |||||| ||||||| | ||||| || || |||| |||||||||||||||||||||| ||||||||| |||| ||| || ||| | | ||| |||| ||||    
T  23614530 tttatgctaatttttg-caactaaacttatttgaggtagctcaatgtttattatttagggtagccggatataaatatataccgattaattcaagaataat 23614432  T
Q  275 atattttttggggtagccaaggctacccct 304  Q
    |  |||||||||||||||||||||||||||    
T  23614431 actttttttggggtagccaaggctacccct 23614402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 53 - 175
Target Start/End: Complemental strand, 23614776 - 23614656
Alignment:
Q  53 aaaatgcatttcaagaaaccaattttatccataattgaccgtttactaaatagattaataatgtcttttccaatgtaaaacaaataggttatttgcaaga 152  Q
    ||||||||||| ||||| ||||||| ||| ||||||| | ||||| ||| ||||||||||||| |||||  ||||||||  ||||| |||||||||||||    
T  23614776 aaaatgcatttgaagaacccaatttcatcaataattgtctgtttaataa-tagattaataatgactttttaaatgtaaat-aaatatgttatttgcaaga 23614679  T
Q  153 aactcaatgtccatttaatttgt 175  Q
    |||||| ||||  ||||||||||    
T  23614678 aactcattgtctgtttaatttgt 23614656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 33 - 180
Target Start/End: Original strand, 1600502 - 1600650
Alignment:
Q  33 gctatttaaaaaagttgtgtaaaatgcatttcaagaaaccaattttatccataattgaccgtttactaaatagattaataatg---tcttttccaatgta 129  Q
    |||||||| ||| |||| ||||||| | ||||| ||| ||||||| ||| |||||||    |||| ||| ||||||||| |||   ||||||| ||||||    
T  1600502 gctatttagaaatgttgggtaaaatacgtttcaggaacccaatttcatcaataattgtttatttaataa-tagattaatgatgatttcttttcaaatgta 1600600  T
Q  130 aaacaaataggttatttgcaagaaactcaatgtccatttaatttgtttatg 180  Q
    ||  ||||||||||||||||||||||||| |||||||||||||||| ||||    
T  1600601 aat-aaataggttatttgcaagaaactcattgtccatttaatttgtctatg 1600650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 175 - 238
Target Start/End: Complemental strand, 29357232 - 29357169
Alignment:
Q  175 tttatgttaattttcgacaactgaatttgtttggggtagctcaatgtttattatttggggtagc 238  Q
    |||||||||||||||| ||||| || || |||||||||||||||| ||||||||||||||||||    
T  29357232 tttatgttaattttcggcaactaaacttatttggggtagctcaatatttattatttggggtagc 29357169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 35 - 179
Target Start/End: Complemental strand, 46515753 - 46515613
Alignment:
Q  35 tatttaaaaaagttgtgtaaaatgcatttcaagaaaccaattttatccataattgaccgtttactaaatagattaataatgtcttttccaatgtaaaaca 134  Q
    ||||||||||| ||| | |||| | |||| |||||  ||||||||||||| |||||| ||||| ||||||||||| |||||  |||| |||||| |||||    
T  46515753 tatttaaaaaatttgggcaaaacgtattttaagaactcaattttatccatgattgactgtttaataaatagattattaatg--tttttcaatgt-aaaca 46515657  T
Q  135 aataggttatttgcaagaaactcaatgtccatttaatttgtttat 179  Q
    || | ||||||| ||| ||||| | ||||| ||||||||||||||    
T  46515656 aacaagttattttcaa-aaacttattgtccttttaatttgtttat 46515613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 204 - 303
Target Start/End: Complemental strand, 21972298 - 21972199
Alignment:
Q  204 tttggggtagctcaatgtttattatttggggtagccgaatattaatttacaccaacttattaaagattaatatattttttggggtagccaaggctacccc 303  Q
    |||||||||||||||| |||||||||||||||||   ||| | | |||| | ||||  ||| |||| |||| |||||||||||||||| |||||||||||    
T  21972298 tttggggtagctcaatatttattatttggggtagttaaatgtaattttatatcaaccaattcaagaataatttattttttggggtagcaaaggctacccc 21972199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 115 - 180
Target Start/End: Complemental strand, 15757822 - 15757758
Alignment:
Q  115 gtcttttccaatgtaaaacaaataggttatttgcaagaaactcaatgtccatttaatttgtttatg 180  Q
    |||||||| ||||||||  ||||||||||||||||||||||||| ||| |||||||||||| ||||    
T  15757822 gtcttttcaaatgtaaat-aaataggttatttgcaagaaactcattgtacatttaatttgtctatg 15757758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 175 - 240
Target Start/End: Complemental strand, 19313281 - 19313217
Alignment:
Q  175 tttatgttaattttcgacaactgaatttgtttggggtagctcaatgtttattatttggggtagccg 240  Q
    ||||||||||| || | |||| |||| |||||||||||||||||| ||||||||||||||||||||    
T  19313281 tttatgttaatatttg-caacggaatgtgtttggggtagctcaatatttattatttggggtagccg 19313217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 35 - 179
Target Start/End: Complemental strand, 21972576 - 21972436
Alignment:
Q  35 tatttaaaaaagttgtgtaaaatgcatttcaagaaaccaattttatccataattgaccgtttactaaatagattaataatgtcttttccaatgtaaaaca 134  Q
    ||||||||||| ||| | |||| | |||| |||||   ||||||||||||||||||| ||||| ||||||||||| |||||  |||| |||||| || ||    
T  21972576 tatttaaaaaatttgggcaaaacgtattttaagaagtaaattttatccataattgactgtttaataaatagattattaatg--tttttcaatgt-aagca 21972480  T
Q  135 aataggttatttgcaagaaactcaatgtccatttaatttgtttat 179  Q
    || | ||||||| ||| ||||| | ||||| ||||||||||||||    
T  21972479 aacaagttattttcaa-aaacttattgtccttttaatttgtttat 21972436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 175 - 287
Target Start/End: Original strand, 10989447 - 10989559
Alignment:
Q  175 tttatgttaattttcgacaactgaatttgtttggggtagctcaatgtttattatttggggtagccgaatattaatttacaccaacttattaaagattaat 274  Q
    ||||||||||||||  |||| | |||||||||||||||||| ||| ||| ||||||||||||||  ||||| ||   | |||||| |||| |||| ||||    
T  10989447 tttatgttaatttttaacaaataaatttgtttggggtagctaaatattttttatttggggtagctaaatataaaaacataccaacatattcaagaataat 10989546  T
Q  275 atattttttgggg 287  Q
    |  ||||||||||    
T  10989547 actttttttgggg 10989559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 204 - 304
Target Start/End: Complemental strand, 11142541 - 11142442
Alignment:
Q  204 tttggggtagctcaatgtttattatttggggtagccgaatattaatttacaccaacttattaaagattaatatattttttggggtagccaaggctacccc 303  Q
    ||||| |||||||||||||||||||||| ||||||||||||| | |  | ||| ||   || |||  |||||| ||||||||||||||||||||||||||    
T  11142541 tttggagtagctcaatgtttattatttgaggtagccgaatataagtacataccgaccactttaagtataatat-ttttttggggtagccaaggctacccc 11142443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 131
Target Start/End: Original strand, 5184626 - 5184737
Alignment:
Q  17 ataaaaattgacaatagctatttaaaaaagttgtgtaaaatgcatttcaagaaaccaattttatccataattgaccgtttactaaatagattaataatgt 116  Q
    |||||||||||||| |  ||||||||||||||| |  ||| |||||| ||| |  ||||||||| |||||||||| | ||| ||||||||||| ||||||    
T  5184626 ataaaaattgacaacaaatatttaaaaaagttg-ggcaaacgcattttaaggagtcaattttatgcataattgactg-ttaataaatagattattaatgt 5184723  T
Q  117 cttttccaatgtaaa 131  Q
    ||||| |||||||||    
T  5184724 ctttt-caatgtaaa 5184737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 115 - 180
Target Start/End: Complemental strand, 10620209 - 10620145
Alignment:
Q  115 gtcttttccaatgtaaaacaaataggttatttgcaagaaactcaatgtccatttaatttgtttatg 180  Q
    |||||||| ||||||||  ||||||||||||| ||||||||||| ||| |||||||||||| ||||    
T  10620209 gtcttttcaaatgtaaat-aaataggttattttcaagaaactcattgtacatttaatttgtctatg 10620145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 175 - 238
Target Start/End: Original strand, 5184891 - 5184954
Alignment:
Q  175 tttatgttaattttcgacaactgaatttgtttggggtagctcaatgtttattatttggggtagc 238  Q
    |||||| ||||||| |||||| ||| || ||| ||||| |||||| ||||||||||||||||||    
T  5184891 tttatgctaattttagacaaccgaacttatttagggtaactcaatatttattatttggggtagc 5184954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 175 - 238
Target Start/End: Complemental strand, 10177796 - 10177734
Alignment:
Q  175 tttatgttaattttcgacaactgaatttgtttggggtagctcaatgtttattatttggggtagc 238  Q
    |||||||||||||| | |||| |||||| ||| |||||||||||| |||||||||||| |||||    
T  10177796 tttatgttaatttttg-caacggaatttatttagggtagctcaatatttattatttggagtagc 10177734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 205 - 240
Target Start/End: Complemental strand, 44960944 - 44960909
Alignment:
Q  205 ttggggtagctcaatgtttattatttggggtagccg 240  Q
    ||||||||||||||| ||||||||||||||||||||    
T  44960944 ttggggtagctcaatctttattatttggggtagccg 44960909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 17 - 147
Target Start/End: Original strand, 10989152 - 10989281
Alignment:
Q  17 ataaaaattgacaatagctatttaaaaaagttgtgtaaaatgcatttcaagaaaccaattttatccataattgaccgtttactaaatagattaataatgt 116  Q
    |||||||||||||||| |||||||||||||||| |   ||  ||||| || ||   |||||| | || ||||||  |  ||||||||| | |||||||||    
T  10989152 ataaaaattgacaataactatttaaaaaagttgggctcaacacattttaaaaagttaattttcttcagaattgattgcatactaaatatactaataatgt 10989251  T
Q  117 cttttccaatgtaaaacaaataggttatttg 147  Q
    ||||| |||||| ||||||||| ||||||||    
T  10989252 ctttttcaatgt-aaacaaataagttatttg 10989281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 72 - 153
Target Start/End: Original strand, 27696506 - 27696583
Alignment:
Q  72 caattttatccataattgaccgtttactaaatagattaataatgtcttttccaatgtaaaacaaataggttatttgcaagaa 153  Q
    |||||||||||||||||||  ||||| |||| |||||| ||||||||||| |||||||||   ||||||||||||| |||||    
T  27696506 caattttatccataattgattgtttaataaa-agattactaatgtctttt-caatgtaaa--caataggttatttgtaagaa 27696583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 72 - 153
Target Start/End: Complemental strand, 24134455 - 24134376
Alignment:
Q  72 caattttatccataattgaccgtttactaaatagattaataatgtcttttccaatgtaaaacaaataggttatttgcaagaa 153  Q
    ||||||||||||||||||||  |||  |||| |||||| |||||| ||||  ||||| ||||||||| ||||||||||||||    
T  24134455 caattttatccataattgactatttgataaaaagattattaatgt-tttttaaatgt-aaacaaatatgttatttgcaagaa 24134376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 175 - 238
Target Start/End: Complemental strand, 46515505 - 46515441
Alignment:
Q  175 tttatgttaattttcgacaa-ctgaatttgtttggggtagctcaatgtttattatttggggtagc 238  Q
    |||||| ||||||||||||| |  ||||| |||||||||||||||| |||||| ||| |||||||    
T  46515505 tttatgctaattttcgacaaaccaaatttatttggggtagctcaatatttattttttagggtagc 46515441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 286; Significance: 1e-160; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 11 - 328
Target Start/End: Complemental strand, 16546523 - 16546206
Alignment:
Q  11 caaaggataaaaattgacaatagctatttaaaaaagttgtgtaaaatgcatttcaagaaaccaattttatccataattgaccgtttactaaatagattaa 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16546523 caaaggataaaaattgacaatagctatttaaaaaagttgtgtaaaatgcatttcaagaaaccaattttatccataattgaccgtttactaaatagattaa 16546424  T
Q  111 taatgtcttttccaatgtaaaacaaataggttatttgcaagaaactcaatgtccatttaatttgtttatgttaattttcgacaactgaatttgtttgggg 210  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||    
T  16546423 taatgtcttttccaatgtaaaacaaataggttatttggaagaaactcaatgtccatttaatttgtttatgttaattttcggcaactgaatttgtttaggg 16546324  T
Q  211 tagctcaatgtttattatttggggtagccgaatattaatttacaccaacttattaaagattaatatattttttggggtagccaaggctaccccttgtcaa 310  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||    
T  16546323 tagctcaatgtttattatttggggtagccgaatataaatttacaccaacttattaaagtttaatatattttttggggtagccaaggctaacccttgtcaa 16546224  T
Q  311 tgaagggatgcgcccctg 328  Q
    ||||| | ||||||||||    
T  16546223 tgaagagttgcgcccctg 16546206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 11 - 317
Target Start/End: Original strand, 45655875 - 45656180
Alignment:
Q  11 caaaggataaaaattgacaatagctatttaaaaaagttgtgtaaaatgcatttcaagaaaccaattttatccataattgaccgtttactaaatagattaa 110  Q
    |||||||||| |||| ||||||||||||||||||||||| |||||||||||||||| || |||||||||| |||||||||||||||||||||||||||||    
T  45655875 caaaggataagaattaacaatagctatttaaaaaagttgggtaaaatgcatttcaaaaagccaattttattcataattgaccgtttactaaatagattaa 45655974  T
Q  111 taatgtcttttccaatgtaaaacaaataggttatttgcaagaaactcaatgtccatttaatttgtttatgttaattttcgacaactgaatttgtttgggg 210  Q
    ||||||||||| ||||||||| |||||||||||||||||||||| ||||||||||||| | ||||||||| ||  |||||||||||||||||||||||||    
T  45655975 taatgtctttttcaatgtaaa-caaataggttatttgcaagaaattcaatgtccatttcaattgtttatgctagctttcgacaactgaatttgtttgggg 45656073  T
Q  211 tagctcaatgtttattatttggggtagccgaatattaatttacaccaacttattaaagattaatatattttttggggtagccaaggctaccccttgtcaa 310  Q
    ||||||||| |||||||||||||||||||||| || |||||| ||||||  |||||| |||||||||||||||||||||||||||||||||||||| |||    
T  45656074 tagctcaatatttattatttggggtagccgaaaataaatttataccaaccaattaaaaattaatatattttttggggtagccaaggctaccccttgccaa 45656173  T
Q  311 tgaaggg 317  Q
    |||||||    
T  45656174 tgaaggg 45656180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 40 - 226
Target Start/End: Original strand, 39070152 - 39070338
Alignment:
Q  40 aaaaaagttgtgtaaaatgcatttcaagaaaccaattttatccataattgaccgtttactaaatagattaataatgtcttttccaatgtaaaacaaatag 139  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39070152 aaaaaagttgtgtaaaatgcatttcaagaaaccaattttatccataattgaccgtttactaaatagattaataatgtcttttccaatgtaaaacaaatag 39070251  T
Q  140 gttatttgcaagaaactcaatgtccatttaatttgtttatgttaattttcgacaactgaatttgtttggggtagctcaatgtttatt 226  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| ||||| |||||||||||||    
T  39070252 gttatttgcaagaaactcaatgtccatttaatttatttatgttaattttcggcaactgaatttgtttagggtatctcaatgtttatt 39070338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 19 - 239
Target Start/End: Complemental strand, 37614754 - 37614532
Alignment:
Q  19 aaaaattgacaatagctatttaaaaaagttgtgtaaaatgcatttcaagaaaccaattttatccataattgaccgtttactaaatagattaataatgtct 118  Q
    ||||| |||||||||  ||| |||||||||| ||||||||||||||||||| |||| ||||| |||||||  ||||||||||||||||||||||||||||    
T  37614754 aaaaaatgacaatagaaattaaaaaaagttgggtaaaatgcatttcaagaagccaaatttattcataattagccgtttactaaatagattaataatgtct 37614655  T
Q  119 tttccaatgta--aaacaaataggttatttgcaagaaactcaatgtccatttaatttgtttatgttaattttcgacaactgaatttgtttggggtagctc 216  Q
    |||||||||||  ||||||||||||||||||||||||| |||||||| |||||||||||||||| ||||||||||| | | |||||| ||||||| ||||    
T  37614654 tttccaatgtagtaaacaaataggttatttgcaagaaattcaatgtctatttaatttgtttatgctaattttcgacgattaaatttgcttggggtggctc 37614555  T
Q  217 aatgtttattatttggggtagcc 239  Q
    |||||||||||||||||||||||    
T  37614554 aatgtttattatttggggtagcc 37614532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 11 - 180
Target Start/End: Original strand, 42799084 - 42799253
Alignment:
Q  11 caaaggataaaaattgacaatagctatttaaaaaagttgtgtaaaatgcatttcaagaaaccaattttatccataattga-ccgtttactaaatagatta 109  Q
    |||| ||||||||||||||||||||||||||||||||||  |||||||||||||||||| |||||||||||||||||||| |  ||||||||||||||||    
T  42799084 caaatgataaaaattgacaatagctatttaaaaaagttggataaaatgcatttcaagaagccaattttatccataattgatcattttactaaatagatta 42799183  T
Q  110 ataatgtcttttccaatgtaaaacaaataggttatttgcaagaaactcaatgtccatttaatttgtttatg 180  Q
    ||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  42799184 ataatgtcttttccaatgt-aaacaaatagtttatttgcaagaaactcaatgtccatttaatttgtttatg 42799253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 212 - 327
Target Start/End: Original strand, 39070355 - 39070459
Alignment:
Q  212 agctcaatgtttattatttggggtagccgaatattaatttacaccaacttattaaagattaatatattttttggggtagccaaggctaccccttgtcaat 311  Q
    |||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||           |||||||||||||||    
T  39070355 agctcaatgtttattatttgaggtagccgaatataaatttacaccaacttattaaagattaatatattttttgg-----------ctaccccttgtcaat 39070443  T
Q  312 gaagggatgcgcccct 327  Q
    |||||| |||||||||    
T  39070444 gaagggctgcgcccct 39070459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 35 - 167
Target Start/End: Complemental strand, 4435417 - 4435287
Alignment:
Q  35 tatttaaaaaagttgtgtaaaatgcatttcaagaaaccaattttatccataattgaccgtttactaaatagattaataatgtcttttccaatgtaaaaca 134  Q
    |||||| ||| |||| | |||||||||||||||||  |||||| ||||||||||| | ||||| ||| |||||||||||||||||||| ||||| ||| |    
T  4435417 tatttagaaacgttgggcaaaatgcatttcaagaactcaatttcatccataattgtctgtttaataa-tagattaataatgtcttttcaaatgt-aaata 4435320  T
Q  135 aataggttatttgcaagaaactcaatgtccatt 167  Q
    |||||||||||| ||||||||||| ||||||||    
T  4435319 aataggttatttacaagaaactcattgtccatt 4435287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 185 - 331
Target Start/End: Complemental strand, 26180551 - 26180406
Alignment:
Q  185 ttttcgacaactgaatttgtttggggtagctcaatgtttattatttggggtagccgaatattaatttacaccaacttattaaagattaatatattttttg 284  Q
    |||| ||||||| || ||||||| ||||||||||| |||||||||||  |||||   |||| |||  | ||||||| ||| || ||||||||||||||||    
T  26180551 ttttggacaactaaacttgtttgaggtagctcaatatttattatttgaagtagctagatataaatacataccaactaattcaaaattaatatattttttg 26180452  T
Q  285 gggtagccaaggctaccccttgtcaatgaagggatgcgcccctgctt 331  Q
    || ||||||||||||| ||||||  |||||||| | |||||||||||    
T  26180451 gg-tagccaaggctactccttgtatatgaagggctacgcccctgctt 26180406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 175 - 329
Target Start/End: Original strand, 8230376 - 8230531
Alignment:
Q  175 tttatgttaattttcgacaactgaatttgtttggggtagctcaatgtttattatttggggtagccgaatattaatttacaccaacttattaaagattaat 274  Q
    ||||||||||||||  |||| | |||||||||||||||||| ||| ||| ||||||||||||||  ||||| ||   | |||||| |||| |||| ||||    
T  8230376 tttatgttaatttttaacaaataaatttgtttggggtagctaaatattttttatttggggtagctaaatataaaaacataccaacatattcaagaataat 8230475  T
Q  275 a-tattttttggggtagccaaggctaccccttgtcaatgaagggatgcgcccctgc 329  Q
    | | |||||||||||||||| ||||||| | ||  ||||||||||  |||||||||    
T  8230476 acttttttttggggtagccatggctacctcatgctaatgaagggaaccgcccctgc 8230531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 17 - 156
Target Start/End: Original strand, 21746085 - 21746221
Alignment:
Q  17 ataaaaattgacaatagctatttaaaaaagttgtgtaaaatgcatttcaagaaaccaattttatccataattgaccgtttactaaatagattaataatgt 116  Q
    |||||||||||||| ||||||||||||||||||   | ||  |||||||| ||| ||||||||| | |||||||  || ||||||||||| |||||||||    
T  21746085 ataaaaattgacaaaagctatttaaaaaagttggacacaa--catttcaaaaaatcaattttattcttaattgattgtatactaaatagactaataatgt 21746182  T
Q  117 cttttccaatgtaaaacaaataggttatttgcaagaaact 156  Q
    | ||| |||||| ||| ||||| |||| ||||| ||||||    
T  21746183 cattttcaatgt-aaataaataagttacttgcatgaaact 21746221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 18 - 131
Target Start/End: Original strand, 14802654 - 14802768
Alignment:
Q  18 taaaaattgacaatagctatttaaaaaagttgtgtaaaatgcatttcaagaaaccaattttatccataattgaccgtttac-taaatagattaataatgt 116  Q
    ||||||||||||| | ||||||| ||||||||   |||| || ||||||||| ||||||||||  ||||||||  ||||||  |||||||||||||||||    
T  14802654 taaaaattgacaacaactatttagaaaagttggacaaaacgcgtttcaagaagccaattttatttataattgattgtttacaaaaatagattaataatgt 14802753  T
Q  117 cttttccaatgtaaa 131  Q
     ||||| ||||||||    
T  14802754 tttttctaatgtaaa 14802768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 175 - 328
Target Start/End: Original strand, 35524913 - 35525066
Alignment:
Q  175 tttatgttaattttcgacaactgaatttgtttggggtagctcaatgtttattatttggggtagccgaatattaatttacaccaacttattaaagattaat 274  Q
    ||||||||||||||  |||| | ||||| |||||||||||| ||| ||| ||||||||||||||  ||||| ||   | |||||| |||| ||||  |||    
T  35524913 tttatgttaatttttaacaaataaatttatttggggtagctaaatattttttatttggggtagctaaatataaaaacataccaacatattcaagaaaaat 35525012  T
Q  275 atattttttggggtagccaaggctaccccttgtcaatgaagggatgcgcccctg 328  Q
    |  |||||||||||||||| ||||||| | ||  ||||||||||  ||||||||    
T  35525013 aatttttttggggtagccatggctacctcatgctaatgaagggaaccgcccctg 35525066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 11 - 52
Target Start/End: Original strand, 39069978 - 39070019
Alignment:
Q  11 caaaggataaaaattgacaatagctatttaaaaaagttgtgt 52  Q
    ||||| ||||||||||||||||||||||||||||||||||||    
T  39069978 caaagtataaaaattgacaatagctatttaaaaaagttgtgt 39070019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 193 - 252
Target Start/End: Original strand, 42799360 - 42799420
Alignment:
Q  193 aactgaatttgtttggggtagctcaatgtttattattt-ggggtagccgaatattaattta 252  Q
    |||||||||||||||| |||||| |||||||||||||| |||||||| |||||| ||||||    
T  42799360 aactgaatttgtttggtgtagctgaatgtttattatttgggggtagctgaatataaattta 42799420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 96 - 150
Target Start/End: Original strand, 35524694 - 35524747
Alignment:
Q  96 tactaaatagattaataatgtcttttccaatgtaaaacaaataggttatttgcaa 150  Q
    ||||||||||| |||||||||||||| |||||| ||||||||| |||||||||||    
T  35524694 tactaaatagactaataatgtctttttcaatgt-aaacaaataagttatttgcaa 35524747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 208 - 304
Target Start/End: Complemental strand, 4435120 - 4435024
Alignment:
Q  208 gggtagctcaatgtttattatttggggtagccgaatattaatttacaccaacttattaaagattaatatattttttggggtagccaaggctacccct 304  Q
    |||||| ||||||||||||||||  |||| ||| |||| |||  | ||| ||  ||| |||| ||||||||||||| ||||||||  ||||||||||    
T  4435120 gggtagttcaatgtttattatttaaggtaaccggatataaatacataccgaccaattcaagaataatatatttttttgggtagccttggctacccct 4435024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 17 - 49
Target Start/End: Original strand, 35524615 - 35524647
Alignment:
Q  17 ataaaaattgacaatagctatttaaaaaagttg 49  Q
    |||||||||||||||| ||||||||||||||||    
T  35524615 ataaaaattgacaataactatttaaaaaagttg 35524647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 53 - 117
Target Start/End: Complemental strand, 38881857 - 38881794
Alignment:
Q  53 aaaatgcatttcaagaaaccaattttatccataattgaccgtttactaaatagattaataatgtc 117  Q
    ||||| ||||||||||| ||||||| ||| ||||||| | ||||| | |||||||||||||||||    
T  38881857 aaaatacatttcaagaacccaatttcatctataattgtctgtttaat-aatagattaataatgtc 38881794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 282; Significance: 1e-158; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 11 - 328
Target Start/End: Complemental strand, 12491735 - 12491418
Alignment:
Q  11 caaaggataaaaattgacaatagctatttaaaaaagttgtgtaaaatgcatttcaagaaaccaattttatccataattgaccgtttactaaatagattaa 110  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  12491735 caaaggattaaaattgacaatagctatttaaaaaagttgtgtaaaatgcatttcaagaaaccaattgtatccataattgaccgtttactaaatagattaa 12491636  T
Q  111 taatgtcttttccaatgtaaaacaaataggttatttgcaagaaactcaatgtccatttaatttgtttatgttaattttcgacaactgaatttgtttgggg 210  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  12491635 taatgttttttccaatgtaaaacaaataggttatttgcaagaaactcaatgtccatttaatttgtttatgttaattttcggcaactgaatttgtttgggg 12491536  T
Q  211 tagctcaatgtttattatttggggtagccgaatattaatttacaccaacttattaaagattaatatattttttggggtagccaaggctaccccttgtcaa 310  Q
     |||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  12491535 cagctcaatgtttgttatttggggtagccgaatattaatttgcaccaacttattaaagattaatatattttttggagtagccaaggctaccccttgtcaa 12491436  T
Q  311 tgaagggatgcgcccctg 328  Q
    ||||||| ||||||||||    
T  12491435 tgaagggttgcgcccctg 12491418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 11 - 180
Target Start/End: Complemental strand, 18882025 - 18881858
Alignment:
Q  11 caaaggataaaaattgacaatagctatttaaaaaagttgtgtaaaatgcatttcaagaaaccaattttatccataattgaccgtttactaaatagattaa 110  Q
    |||| ||||||||||||||||| ||||||| |||| |||   |||||| ||||||||||  |||||||||||||||||||  |||||| |||||||||||    
T  18882025 caaatgataaaaattgacaataactatttagaaaatttggacaaaatg-atttcaagaaggcaattttatccataattgattgtttacaaaatagattaa 18881927  T
Q  111 taatgtcttttccaatgtaaaacaaataggttatttgcaagaaactcaatgtccatttaatttgtttatg 180  Q
    |||||| ||||||||||| ||||||||||||||||||||||||||||| || ||||||||| ||||||||    
T  18881926 taatgttttttccaatgt-aaacaaataggttatttgcaagaaactcattgcccatttaatatgtttatg 18881858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 11 - 180
Target Start/End: Original strand, 38172699 - 38172870
Alignment:
Q  11 caaaggataaaaattgacaatagctatttaaaaaagttgtgtaaaatgcatttcaagaaaccaattttatccataattgaccgtttactaa----ataga 106  Q
    |||||||||||||||||||||||||||| | |||| |||   || ||||||||||| |||||||||||||||||||||||  |||||||||    |||||    
T  38172699 caaaggataaaaattgacaatagctatt-agaaaatttggacaagatgcatttcaaaaaaccaattttatccataattgagtgtttactaaatatataga 38172797  T
Q  107 ttaataatgtcttttccaatgtaaaacaaataggttatttgcaagaaactcaatgtccatttaatttgtttatg 180  Q
    |||||||||| || |||||||| |||| |||||||||||||||| ||||||| ||| |||||||||||||||||    
T  38172798 ttaataatgtattctccaatgt-aaactaataggttatttgcaataaactcattgttcatttaatttgtttatg 38172870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 33 - 175
Target Start/End: Original strand, 38699683 - 38699823
Alignment:
Q  33 gctatttaaaaaagttgtgtaaaatgcatttcaagaaaccaattttatccataattgaccgtttactaaatagattaataatgtcttttccaatgtaaaa 132  Q
    |||||||| ||| |||| | ||||||| ||||||||| ||||||| ||| ||||| ||| ||||| ||| |||||||||||||||||||| ||||||||     
T  38699683 gctatttagaaacgttgggcaaaatgcgtttcaagaacccaatttcatcaataatagactgtttaataa-tagattaataatgtcttttcaaatgtaaat 38699781  T
Q  133 caaataggttatttgcaagaaactcaatgtccatttaatttgt 175  Q
     ||||||||||||||||||||||||| | ||||||||||||||    
T  38699782 -aaataggttatttgcaagaaactcactctccatttaatttgt 38699823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 175 - 328
Target Start/End: Original strand, 6115131 - 6115284
Alignment:
Q  175 tttatgttaattttcgacaactgaatttgtttggggtagctcaatgtttattatttggggtagccgaatattaatttacaccaacttattaaagattaat 274  Q
    ||||||||| |||| | |||||||| ||||||||||||| ||||||||||||||||  |||||| | ||||  ||  | ||||||| ||  |||| ||||    
T  6115131 tttatgttattttttggcaactgaacttgtttggggtagttcaatgtttattatttatggtagctggatatagatacataccaactaatacaagaataat 6115230  T
Q  275 atattttttggggtagccaaggctaccccttgtcaatgaagggatgcgcccctg 328  Q
    || ||||||||||||||||||||||||||||   |||||| |||| ||||||||    
T  6115231 attttttttggggtagccaaggctaccccttcctaatgaaaggatacgcccctg 6115284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 175 - 328
Target Start/End: Complemental strand, 32415797 - 32415644
Alignment:
Q  175 tttatgttaattttcgacaactgaatttgtttggggtagctcaatgtttattatttggggtagccgaatattaatttacaccaacttattaaagattaat 274  Q
    ||||| |||||||| ||||||| ||||| ||||||||| |||||||||||||||||  ||| |||  |||| | |||| ||||||  ||| |||| ||||    
T  32415797 tttatattaatttttgacaacttaatttatttggggtaactcaatgtttattatttaaggttgccagatataagtttataccaaccaattgaagaataat 32415698  T
Q  275 atattttttggggtagccaaggctaccccttgtcaatgaagggatgcgcccctg 328  Q
    ||||||||| |||||||||| | |||||||||||  ||||||| | ||||||||    
T  32415697 atatttttttgggtagccaaagttaccccttgtcgttgaagggctacgcccctg 32415644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 54 - 169
Target Start/End: Complemental strand, 43115347 - 43115234
Alignment:
Q  54 aaatgcatttcaagaaaccaattttatccataattgaccgtttactaaatagattaataatgtcttttccaatgtaaaacaaataggttatttgcaagaa 153  Q
    |||||| ||||||||| ||||||| ||| ||||||||| ||||| ||| |||||||||||||| ||||| ||||||||  ||||| ||||||||||||||    
T  43115347 aaatgcgtttcaagaacccaatttcatcaataattgactgtttaataa-tagattaataatgttttttcaaatgtaaat-aaatatgttatttgcaagaa 43115250  T
Q  154 actcaatgtccattta 169  Q
    ||||| ||||||||||    
T  43115249 actcactgtccattta 43115234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 36 - 173
Target Start/End: Original strand, 13541357 - 13541491
Alignment:
Q  36 atttaaaaaagttgtgtaaaatgcatttcaagaaaccaattttatccataattgaccgtttactaaatagattaataatgtcttttccaatgtaaaacaa 135  Q
    ||||||||| |||| | ||||||| |||| ||||  |||||| |||  |||||| | |||||  ||||||||||||||| ||||||| ||||||||  ||    
T  13541357 atttaaaaacgttgggcaaaatgcgtttcgagaactcaatttcatcactaattgtctgttta--aaatagattaataatatcttttcaaatgtaaat-aa 13541453  T
Q  136 ataggttatttgcaagaaactcaatgtccatttaattt 173  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  13541454 ataggttatttgcaagaaactcattgtccatttaattt 13541491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 36 - 173
Target Start/End: Complemental strand, 13683116 - 13682982
Alignment:
Q  36 atttaaaaaagttgtgtaaaatgcatttcaagaaaccaattttatccataattgaccgtttactaaatagattaataatgtcttttccaatgtaaaacaa 135  Q
    ||||||||| |||| | ||||||| |||| ||||  |||||| |||  |||||| | |||||  ||||||||||||||| ||||||| ||||||||  ||    
T  13683116 atttaaaaacgttgggcaaaatgcgtttcgagaactcaatttcatcactaattgtctgttta--aaatagattaataatatcttttcaaatgtaaat-aa 13683020  T
Q  136 ataggttatttgcaagaaactcaatgtccatttaattt 173  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  13683019 ataggttatttgcaagaaactcattgtccatttaattt 13682982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 11 - 180
Target Start/End: Complemental strand, 41570609 - 41570441
Alignment:
Q  11 caaaggataaaaattgacaatagctatttaaaaaagttgtgtaaaatgcatttcaagaaaccaatttt-atccataattgaccgtttactaaatagatta 109  Q
    |||| ||||| ||||||| ||||||||||| ||||||||    |||||| ||||||||| |||||||| ||||||||||||  |||||| ||||||||||    
T  41570609 caaatgataagaattgaccatagctatttagaaaagttggactaaatgcgtttcaagaagccaatttttatccataattgattgtttacaaaatagatta 41570510  T
Q  110 ataatgtcttttccaatgtaaaacaaataggttatttgcaagaaactcaatgtccatttaatttgtttatg 180  Q
    ||  ||| ||||  || || ||||||||||||||||||||||||||||| |   |||||||| ||||||||    
T  41570509 atgttgt-ttttttaaggt-aaacaaataggttatttgcaagaaactcattactcatttaatatgtttatg 41570441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 183 - 305
Target Start/End: Complemental strand, 41570311 - 41570189
Alignment:
Q  183 aattttcgacaactgaatttgtttggggtagctcaatgtttattatttggggtagccgaatattaatttacaccaacttattaaagattaatatattttt 282  Q
    |||||||| |||||||| || |||||||||||||||| |||||||||||||||||| |||||| |||  | ||| ||  | | ||||  |||||  ||||    
T  41570311 aattttcggcaactgaacttttttggggtagctcaatatttattatttggggtagctgaatataaatacatacctaccaactcaagaaaaatattgtttt 41570212  T
Q  283 tggggtagccaaggctacccctt 305  Q
    |||||||||||||||||||||||    
T  41570211 tggggtagccaaggctacccctt 41570189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 17 - 129
Target Start/End: Original strand, 6114873 - 6114984
Alignment:
Q  17 ataaaaattgacaatagctatttaaaaaagttgtgtaaaatgcatttcaagaaaccaattttatccataattgaccgtttactaaatagattaataatgt 116  Q
    |||||||||||  ||||||||||||||||| ||  |||||||  ||||||||| ||||||||||||||||  |||  ||||  ||||||||||||||| |    
T  6114873 ataaaaattgatgatagctatttaaaaaagctggataaaatgtgtttcaagaa-ccaattttatccataaaggactatttataaaatagattaataatat 6114971  T
Q  117 cttttccaatgta 129  Q
     ||||||||||||    
T  6114972 attttccaatgta 6114984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 175 - 232
Target Start/End: Original strand, 38172982 - 38173039
Alignment:
Q  175 tttatgttaattttcgacaactgaatttgtttggggtagctcaatgtttattatttgg 232  Q
    ||||| ||||||||| |||| |||| ||||||||||||||||||||||||||||||||    
T  38172982 tttatcttaattttcaacaattgaacttgtttggggtagctcaatgtttattatttgg 38173039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 75 - 180
Target Start/End: Complemental strand, 40118247 - 40118144
Alignment:
Q  75 ttttatccataattgaccgtttactaaatagattaataatgtcttttccaatgtaaaacaaataggttatttgcaagaaactcaatgtccatttaatttg 174  Q
    |||| |||||||||||  ||||||||  |||||||||||| | ||||| |||||||| | ||||| |||||||||| ||| ||| |||||||||||||||    
T  40118247 ttttttccataattgagtgtttactaggtagattaataatatattttc-aatgtaaa-ctaatagattatttgcaataaattcattgtccatttaatttg 40118150  T
Q  175 tttatg 180  Q
    ||||||    
T  40118149 tttatg 40118144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 175 - 259
Target Start/End: Original strand, 1233756 - 1233840
Alignment:
Q  175 tttatgttaattttcgacaactgaatttgtttggggtagctcaatgtttattatttggggtagccgaatattaatttacaccaac 259  Q
    |||||||||||||||| ||||  || ||| ||||||||||||||| ||||||||||||||||||  ||||| ||| || ||||||    
T  1233756 tttatgttaattttcggcaaccaaacttgcttggggtagctcaatatttattatttggggtagctaaatataaatatataccaac 1233840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 184 - 238
Target Start/End: Original strand, 5808853 - 5808907
Alignment:
Q  184 attttcgacaactgaatttgtttggggtagctcaatgtttattatttggggtagc 238  Q
    ||||||||||||  ||||| |||||||||||||||| ||||||||||||||||||    
T  5808853 attttcgacaaccaaatttatttggggtagctcaatatttattatttggggtagc 5808907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 115 - 180
Target Start/End: Original strand, 4072227 - 4072291
Alignment:
Q  115 gtcttttccaatgtaaaacaaataggttatttgcaagaaactcaatgtccatttaatttgtttatg 180  Q
    |||||||| ||||||||  ||||||||||||||||||||||||| ||| |||||||||||| ||||    
T  4072227 gtcttttcaaatgtaaat-aaataggttatttgcaagaaactcattgtacatttaatttgtctatg 4072291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 115 - 180
Target Start/End: Original strand, 21441593 - 21441657
Alignment:
Q  115 gtcttttccaatgtaaaacaaataggttatttgcaagaaactcaatgtccatttaatttgtttatg 180  Q
    |||||||| ||||||||  ||||||||||||||||||||||||| ||| |||||||||||| ||||    
T  21441593 gtcttttcaaatgtaaat-aaataggttatttgcaagaaactcattgtacatttaatttgtctatg 21441657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 175 - 259
Target Start/End: Original strand, 13641112 - 13641196
Alignment:
Q  175 tttatgttaattttcgacaactgaatttgtttggggtagctcaatgtttattatttggggtagccgaatattaatttacaccaac 259  Q
    |||||||||||||||| ||||  || ||| ||||||||||||||| ||||||||||| ||||||  ||||| ||| || ||||||    
T  13641112 tttatgttaattttcggcaaccaaacttgcttggggtagctcaatatttattatttgaggtagctaaatataaatatataccaac 13641196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 175 - 259
Target Start/End: Original strand, 13741524 - 13741608
Alignment:
Q  175 tttatgttaattttcgacaactgaatttgtttggggtagctcaatgtttattatttggggtagccgaatattaatttacaccaac 259  Q
    |||||||||||||||| ||||  || ||| ||||||||||||||| ||||||||||| ||||||  ||||| ||| || ||||||    
T  13741524 tttatgttaattttcggcaaccaaacttgcttggggtagctcaatatttattatttgaggtagctaaatataaatatataccaac 13741608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 134 - 172
Target Start/End: Complemental strand, 33613745 - 33613707
Alignment:
Q  134 aaataggttatttgcaagaaactcaatgtccatttaatt 172  Q
    ||||||||||||||||||||||||| |||||||||||||    
T  33613745 aaataggttatttgcaagaaactcattgtccatttaatt 33613707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 115 - 180
Target Start/End: Original strand, 41323181 - 41323245
Alignment:
Q  115 gtcttttccaatgtaaaacaaataggttatttgcaagaaactcaatgtccatttaatttgtttatg 180  Q
    |||||||| ||||||||  |||||| |||||||||||||||||| ||| |||||||||||| ||||    
T  41323181 gtcttttcaaatgtaaat-aaatagtttatttgcaagaaactcattgtacatttaatttgtctatg 41323245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 72 - 153
Target Start/End: Original strand, 1233564 - 1233641
Alignment:
Q  72 caattttatccataattgaccgtttactaaatagattaataatgtcttttccaatgtaaaacaaataggttatttgcaagaa 153  Q
    |||||||||||||||||||  ||||| |||| |||||| ||||||||||| |||||||||   ||||||||||||| |||||    
T  1233564 caattttatccataattgattgtttaataaa-agattactaatgtctttt-caatgtaaa--caataggttatttgtaagaa 1233641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 72 - 153
Target Start/End: Original strand, 13640920 - 13640997
Alignment:
Q  72 caattttatccataattgaccgtttactaaatagattaataatgtcttttccaatgtaaaacaaataggttatttgcaagaa 153  Q
    |||||||||||||||||||  ||||| |||| |||||| ||||||||||| |||||||||   ||||||||||||| |||||    
T  13640920 caattttatccataattgattgtttaataaa-agattactaatgtctttt-caatgtaaa--caataggttatttgtaagaa 13640997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 72 - 153
Target Start/End: Original strand, 13741332 - 13741409
Alignment:
Q  72 caattttatccataattgaccgtttactaaatagattaataatgtcttttccaatgtaaaacaaataggttatttgcaagaa 153  Q
    |||||||||||||||||||  ||||| |||| |||||| ||||||||||| |||||||||   ||||||||||||| |||||    
T  13741332 caattttatccataattgattgtttaataaa-agattactaatgtctttt-caatgtaaa--caataggttatttgtaagaa 13741409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 191 - 232
Target Start/End: Complemental strand, 43115087 - 43115046
Alignment:
Q  191 acaactgaatttgtttggggtagctcaatgtttattatttgg 232  Q
    ||||| ||||||||||| ||||||||||| ||||||||||||    
T  43115087 acaacggaatttgtttgaggtagctcaatatttattatttgg 43115046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 238; Significance: 1e-131; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 11 - 328
Target Start/End: Complemental strand, 22786196 - 22785880
Alignment:
Q  11 caaaggataaaaattgacaatagctatttaaaaaagttgtgtaaaatgcatttcaagaaaccaattttatccataattgaccgtttactaaatagattaa 110  Q
    |||||||||| |||| ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||    
T  22786196 caaaggataagaattaacaatagctatttaaaaaagttgggtaaaatgcatttcaagaagccaattttatccataatcgaccgtttactaaatagattaa 22786097  T
Q  111 taatgtcttttccaatgtaaaacaaataggttatttgcaagaaactcaatgtccatttaatttgtttatgttaattttcgacaactgaatttgtttgggg 210  Q
    ||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| ||||||||| ||  |||||||||||||||||||||||||    
T  22786096 taatgtcttttccaatgtaaa-caaataggttatttgcaagaaattcaatgtccatttaaattgtttatgctagctttcgacaactgaatttgtttgggg 22785998  T
Q  211 tagctcaatgtttattatttggggtagccgaatattaatttacaccaacttattaaagattaatatattttttggggtagccaaggctaccccttgtcaa 310  Q
    |||||||||||||||||||||||||||||||| || |||||| ||||||  ||||||||||||||||||||||||||||||||||||||||||||| |||    
T  22785997 tagctcaatgtttattatttggggtagccgaaaataaatttataccaaccaattaaagattaatatattttttggggtagccaaggctaccccttgccaa 22785898  T
Q  311 tgaagggatgcgcccctg 328  Q
    ||||||| | ||||||||    
T  22785897 tgaagggctacgcccctg 22785880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 11 - 317
Target Start/End: Original strand, 6016739 - 6017044
Alignment:
Q  11 caaaggataaaaattgacaatagctatttaaaaaagttgtgtaaaatgcatttcaagaaaccaattttatccataattgaccgtttactaaatagattaa 110  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||    
T  6016739 caaaggataaaaattgacaatagctatttaaaaaagttgggtaaaatgcatttcaataagccaattttatccataattgaccgtttactaaatagattaa 6016838  T
Q  111 taatgtcttttccaatgtaaaacaaataggttatttgcaagaaactcaatgtccatttaatttgtttatgttaattttcgacaactgaatttgtttgggg 210  Q
    ||||||||||| ||||||||| |||||||||||||||||||||||||||||| ||||||| ||||||||| ||  |||||||||||||||||||||||||    
T  6016839 taatgtctttttcaatgtaaa-caaataggttatttgcaagaaactcaatgtacatttaaattgtttatgctagctttcgacaactgaatttgtttgggg 6016937  T
Q  211 tagctcaatgtttattatttggggtagccgaatattaatttacaccaacttattaaagattaatatattttttggggtagccaaggctaccccttgtcaa 310  Q
    ||||||||||||||||||||||||||||| || || |||||| ||||||  |||||||||||||||| |||||||||||||||||||||||||||| |||    
T  6016938 tagctcaatgtttattatttggggtagccaaaaataaatttataccaaccaattaaagattaatataatttttggggtagccaaggctaccccttgccaa 6017037  T
Q  311 tgaaggg 317  Q
    |||||||    
T  6017038 tgaaggg 6017044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 11 - 317
Target Start/End: Complemental strand, 2407324 - 2407018
Alignment:
Q  11 caaaggataaaaattgacaatagctatttaaaaaagttgtgtaaaatgcatttcaagaaaccaattttatccataattgaccgtttactaaatagattaa 110  Q
    |||||||||| |||| ||||||||||||||||||||||| |||||||||||||||||||  |||||||||| ||||||||||||||||||||||||||||    
T  2407324 caaaggataagaattaacaatagctatttaaaaaagttgagtaaaatgcatttcaagaagtcaattttatcaataattgaccgtttactaaatagattaa 2407225  T
Q  111 taatgtctttt-ccaatgtaaaacaaataggttatttgcaagaaactcaatgtccatttaatttgtttatgttaattttcgacaactgaatttgtttggg 209  Q
    ||||||||||| |||||||||| |||||||||||||||||||||| ||||||||||||||| ||||||||| ||  |||||||||||||||||  |||||    
T  2407224 taatgtctttttccaatgtaaa-caaataggttatttgcaagaaattcaatgtccatttaaattgtttatgctagctttcgacaactgaatttagttggg 2407126  T
Q  210 gtagctcaatgtttattatttggggtagccgaatattaatttacaccaacttattaaagattaatatattttttggggtagccaaggctaccccttgtca 309  Q
    ||||||||||||||||||||||||||||| ||| || |||||| ||||||  ||||||||||||||||||||||| ||||||||||||||||||||| ||    
T  2407125 gtagctcaatgtttattatttggggtagctgaaaataaatttataccaaccaattaaagattaatatattttttgaggtagccaaggctaccccttgcca 2407026  T
Q  310 atgaaggg 317  Q
    ||||||||    
T  2407025 atgaaggg 2407018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 11 - 180
Target Start/End: Complemental strand, 21790943 - 21790774
Alignment:
Q  11 caaaggataaaaattgacaatagctatttaaaaaagttgtgtaaaatgcatttcaagaaaccaattttatccataattgaccgtttactaaatagattaa 110  Q
    ||||||||||||||| ||  ||| |||||| |||||||| ||||||||||||| |||||  ||||||| |||||||||||  ||||||||| ||||||||    
T  21790943 caaaggataaaaatttaccgtaggtatttagaaaagttgggtaaaatgcattttaagaagtcaattttgtccataattgattgtttactaactagattaa 21790844  T
Q  111 taatgtcttttccaatgtaaaacaaataggttatttgc--aagaaactcaatgtccatttaatttgtttatg 180  Q
    ||||||||||||||| || ||| |||||||||||||||  || ||||||| ||||||||| |||||||||||    
T  21790843 taatgtcttttccaa-gt-aaataaataggttatttgcaaaaaaaactcattgtccattttatttgtttatg 21790774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 11 - 180
Target Start/End: Original strand, 54165869 - 54166031
Alignment:
Q  11 caaaggataaaaattgacaatagctatttaaaaaagttgtgtaaaatgcatttcaagaaaccaattttatccataattgaccgtttactaaatagattaa 110  Q
    ||||||||||||||||||||||| |||| | ||||||||   |||||| ||||||||||| ||||||| ||||||||||| || |||     ||||||||    
T  54165869 caaaggataaaaattgacaatagttatt-agaaaagttggacaaaatgtatttcaagaaatcaattttttccataattgagcgatta-----tagattaa 54165962  T
Q  111 taatgtcttttccaatgtaaaacaaataggttatttgcaagaaactcaatgtccatttaatttgtttatg 180  Q
    |||||| |||| ||||||||| | |||||||||||||||| ||||||| |||||||||||||| ||||||    
T  54165963 taatgtatttttcaatgtaaa-ctaataggttatttgcaataaactcattgtccatttaatttatttatg 54166031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 11 - 180
Target Start/End: Complemental strand, 52628465 - 52628294
Alignment:
Q  11 caaaggataaaaattgacaatagctatttaaaaaagttgtgtaaaatgcatttcaagaaaccaattttatccataattgaccgtttactaaata----ga 106  Q
    |||||||||||||||||||||||||||| | |||| |||   || |||||||||||||||||| ||||||  ||||||||  ||||||||||||    ||    
T  52628465 caaaggataaaaattgacaatagctatt-agaaaatttggacaagatgcatttcaagaaaccagttttataaataattgagtgtttactaaatatataga 52628367  T
Q  107 ttaataatgtcttttccaatgtaaaacaaataggttatttgcaagaaactcaatgtccatttaatttgtttatg 180  Q
    |||||||| | |||||||||||||| | |||||||||||||||| ||||||| ||| |||||||||| ||||||    
T  52628366 ttaataatatattttccaatgtaaa-ctaataggttatttgcaataaactcattgttcatttaatttatttatg 52628294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 175 - 304
Target Start/End: Complemental strand, 48861888 - 48861760
Alignment:
Q  175 tttatgttaattttcgacaactgaatttgtttggggtagctcaatgtttattatttggggtagccgaatattaatttacaccaacttattaaagattaat 274  Q
    |||||| ||||||| | ||||| || || |||||||||||| ||||||||||||||||||||||||||||| ||| || ||| | | ||| |||| ||||    
T  48861888 tttatgctaatttttg-caactaaacttatttggggtagcttaatgtttattatttggggtagccgaatataaatatataccgattaattcaagaataat 48861790  T
Q  275 atattttttggggtagccaaggctacccct 304  Q
    |  |||||||||||||||||||||||||||    
T  48861789 actttttttggggtagccaaggctacccct 48861760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 33 - 180
Target Start/End: Original strand, 8745633 - 8745778
Alignment:
Q  33 gctatttaaaaaagttgtgtaaaatgcatttcaagaaaccaattttatccataattgaccgtttactaaatagattaataatgtcttttccaatgtaaaa 132  Q
    |||||||| ||| |||| | ||||||  |||| |||| ||||||| ||| ||||||| |  |||| ||| |||||||||||||||||||| ||||||||     
T  8745633 gctatttagaaacgttgggcaaaatgtgtttcgagaacccaatttcatcaataattgcctatttaataa-tagattaataatgtcttttcaaatgtaaat 8745731  T
Q  133 caaataggttatttgcaagaaactcaatgtccatttaatttgtttatg 180  Q
     |||||||||||| | |||||||||| |||||||||||||||| ||||    
T  8745732 -aaataggttattcgtaagaaactcattgtccatttaatttgtctatg 8745778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 26 - 167
Target Start/End: Original strand, 17815897 - 17816040
Alignment:
Q  26 gacaatagctatttaaaaaagttgtgtaaaatgcatttcaagaaaccaattttatccataattgaccgtttactaaatagattaataatgtcttttccaa 125  Q
    |||||||||||||||||||||||| | ||||||| ||| |||||  |||||||||||||| ||||  |||||| ||||||||||||||||| ||||  ||    
T  17815897 gacaatagctatttaaaaaagttgggcaaaatgcgtttaaagaagtcaattttatccatagttgattgtttacaaaatagattaataatgttttttt-aa 17815995  T
Q  126 tgtaaaacaaatag---gttattt-gcaagaaactcaatgtccatt 167  Q
    |||||| |||||||   ||||||| |||||||||||| || |||||    
T  17815996 tgtaaa-caaatagtaagttattttgcaagaaactcattgcccatt 17816040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 175 - 303
Target Start/End: Complemental strand, 21790652 - 21790525
Alignment:
Q  175 tttatgttaattttcgacaactgaatttgtttggggtagctcaatgtttattatttggggtagccgaatattaatttacaccaacttattaaagattaat 274  Q
    |||||||||||||||| ||||||||||| |||  ||| ||||||| |||||||||| ||||||  |||||| |||||| | |||||  || |||| ||||    
T  21790652 tttatgttaattttcggcaactgaatttatttatggtggctcaatatttattatttagggtagttgaatataaatttataacaactatttgaagaataat 21790553  T
Q  275 atattttttggggtagccaaggctacccc 303  Q
    |||||||||||| || || ||||||||||    
T  21790552 atattttttgggataacc-aggctacccc 21790525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 101 - 180
Target Start/End: Complemental strand, 48841262 - 48841184
Alignment:
Q  101 aatagattaataatgtcttttccaatgtaaaacaaataggttatttgcaagaaactcaatgtccatttaatttgtttatg 180  Q
    |||||||||||||||||||||| ||||||||  |||||||||||||||||||||| || | |||||||||||||| ||||    
T  48841262 aatagattaataatgtcttttcaaatgtaaat-aaataggttatttgcaagaaacccattatccatttaatttgtctatg 48841184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 11 - 129
Target Start/End: Complemental strand, 11950710 - 11950592
Alignment:
Q  11 caaaggataaaaattgacaatagctatttaaaaaagttgtgtaaaatgcatttcaagaaaccaattttatccataattgaccgtttactaaatagattaa 110  Q
    |||| ||||||||||||||||||||||||| ||||||||   |||||    |||||||| ||||||| || ||||| ||||  ||||| |||||||||||    
T  11950710 caaatgataaaaattgacaatagctatttagaaaagttggacaaaatctgcttcaagaagccaatttaattcataaatgactatttacaaaatagattaa 11950611  T
Q  111 taatgtcttttccaatgta 129  Q
    | ||||||||||| |||||    
T  11950610 tgatgtcttttccgatgta 11950592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 53 - 175
Target Start/End: Complemental strand, 48862134 - 48862014
Alignment:
Q  53 aaaatgcatttcaagaaaccaattttatccataattgaccgtttactaaatagattaataatgtcttttccaatgtaaaacaaataggttatttgcaaga 152  Q
    ||||||||||| ||||| ||||||| ||| ||||||| | ||||| ||| ||||||||||||| |||||  ||||||||  ||||| |||||||||||||    
T  48862134 aaaatgcatttgaagaacccaatttcatcaataattgtctgtttaataa-tagattaataatgactttttaaatgtaaat-aaatatgttatttgcaaga 48862037  T
Q  153 aactcaatgtccatttaatttgt 175  Q
    |||||| ||||  ||||||||||    
T  48862036 aactcattgtctgtttaatttgt 48862014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 175 - 245
Target Start/End: Complemental strand, 52628170 - 52628100
Alignment:
Q  175 tttatgttaattttcgacaactgaatttgtttggggtagctcaatgtttattatttggggtagccgaatat 245  Q
    ||||| ||||||||| |||| |||| ||||||||||||||||||||||||||||||| |||||||| ||||    
T  52628170 tttatcttaattttcaacaattgaacttgtttggggtagctcaatgtttattatttgaggtagccggatat 52628100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 175 - 328
Target Start/End: Original strand, 8762829 - 8762982
Alignment:
Q  175 tttatgttaattttcgacaactgaatttgtttggggtagctcaatgtttattatttggggtagccgaatattaatttacaccaacttattaaagattaat 274  Q
    ||||||||||||||  |||| | ||||| |||||||||||| ||| ||| ||||||||||||||  ||||| ||  || |||||| |||| ||||  |||    
T  8762829 tttatgttaatttttaacaaataaatttatttggggtagctaaatattttttatttggggtagctaaatataaaaatataccaacatattcaagaacaat 8762928  T
Q  275 atattttttggggtagccaaggctaccccttgtcaatgaagggatgcgcccctg 328  Q
    |  |||||||||||||||| ||||||| | ||  ||||||||||  ||||||||    
T  8762929 actttttttggggtagccatggctacctcatgctaatgaagggaaccgcccctg 8762982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 202 - 297
Target Start/End: Complemental strand, 48841043 - 48840949
Alignment:
Q  202 tgtttggggtagctcaatgtttattatttggggtagccgaatattaatttacaccaacttattaaagattaatatattttttggggtagccaaggc 297  Q
    ||||||||||||||||||||||||||||| ||||||||| |||| |||  | ||| ||  |||||||| |||| | ||||||||||||||||||||    
T  48841043 tgtttggggtagctcaatgtttattatttagggtagccggatataaatacataccgacgaattaaagaataat-ttttttttggggtagccaaggc 48840949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 182 - 238
Target Start/End: Original strand, 54166160 - 54166216
Alignment:
Q  182 taattttcgacaactgaatttgtttggggtagctcaatgtttattatttggggtagc 238  Q
    ||||||| |||||||||| ||||||| ||||||||||||||||||||||||| ||||    
T  54166160 taattttagacaactgaacttgtttgaggtagctcaatgtttattatttgggatagc 54166216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 175 - 259
Target Start/End: Original strand, 16608578 - 16608662
Alignment:
Q  175 tttatgttaattttcgacaactgaatttgtttggggtagctcaatgtttattatttggggtagccgaatattaatttacaccaac 259  Q
    ||||||||||||||||  |||  || || |||||||||||||||| ||||||||||||||||||  ||||| ||| || ||||||    
T  16608578 tttatgttaattttcggtaaccaaacttttttggggtagctcaatatttattatttggggtagctaaatataaatatataccaac 16608662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 115 - 180
Target Start/End: Original strand, 43892522 - 43892586
Alignment:
Q  115 gtcttttccaatgtaaaacaaataggttatttgcaagaaactcaatgtccatttaatttgtttatg 180  Q
    |||||||| ||||||||  ||||||||||||||||||||||||| ||  |||||||||||| ||||    
T  43892522 gtcttttcaaatgtaaat-aaataggttatttgcaagaaactcattgcacatttaatttgtctatg 43892586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 96 - 147
Target Start/End: Original strand, 8762614 - 8762664
Alignment:
Q  96 tactaaatagattaataatgtcttttccaatgtaaaacaaataggttatttg 147  Q
    ||||||||||| |||||||||||||| |||||| ||||||||| ||||||||    
T  8762614 tactaaatagactaataatgtctttttcaatgt-aaacaaataagttatttg 8762664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 96 - 150
Target Start/End: Original strand, 5476394 - 5476447
Alignment:
Q  96 tactaaatagattaataatgtcttttccaatgtaaaacaaataggttatttgcaa 150  Q
    ||||||||| | |||||||||||||| |||||| ||||||||| |||||||||||    
T  5476394 tactaaatacactaataatgtctttttcaatgt-aaacaaataagttatttgcaa 5476447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 182 - 219
Target Start/End: Original strand, 856894 - 856931
Alignment:
Q  182 taattttcgacaactgaatttgtttggggtagctcaat 219  Q
    |||||||||||||||||| ||||||||| |||||||||    
T  856894 taattttcgacaactgaacttgtttgggttagctcaat 856931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 17 - 49
Target Start/End: Original strand, 5476315 - 5476347
Alignment:
Q  17 ataaaaattgacaatagctatttaaaaaagttg 49  Q
    |||||||||||||||| ||||||||||||||||    
T  5476315 ataaaaattgacaataactatttaaaaaagttg 5476347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 17 - 49
Target Start/End: Original strand, 8762535 - 8762567
Alignment:
Q  17 ataaaaattgacaatagctatttaaaaaagttg 49  Q
    |||||||||||||||| ||||||||||||||||    
T  8762535 ataaaaattgacaataactatttaaaaaagttg 8762567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 166; Significance: 1e-88; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 11 - 317
Target Start/End: Original strand, 40528085 - 40528392
Alignment:
Q  11 caaaggataaaaattgacaatagctatttaaaaaagttgtg--taaaatgcatttcaagaaaccaattttatccataattgaccgtttactaaatagatt 108  Q
    |||||||||||||||||||||||||||||||     || ||  |||||||||||||||||| ||||||||||| ||| |||| |||||||||||| ||||    
T  40528085 caaaggataaaaattgacaatagctatttaatttttttttgggtaaaatgcatttcaagaagccaattttatctatatttgatcgtttactaaattgatt 40528184  T
Q  109 aataatgtcttttccaatgtaaaacaaataggttatttgcaagaaactcaatgtccatttaatttgtttatgttaattttcgacaactgaatttgtttgg 208  Q
    ||||||||||||| ||||||||| ||||||||||||||| |||||||||||| |||| |||||||||||||| || |||||| |||||||||||| ||||    
T  40528185 aataatgtctttttcaatgtaaa-caaataggttatttgtaagaaactcaatatccacttaatttgtttatgctagttttcggcaactgaatttgcttgg 40528283  T
Q  209 ggtagctcaatgtttattatttggggtagccgaatattaatttacaccaacttattaaagattaatatattttttggggtagccaaggctaccccttgtc 308  Q
    |||||||||||||||||||||| || ||| ||||||| |||||| ||||||  ||||||||||||||||||||||  |||||||||| ||| |||||| |    
T  40528284 ggtagctcaatgtttattatttaggatagtcgaatataaatttataccaaccaattaaagattaatatattttttaaggtagccaagactatcccttgcc 40528383  T
Q  309 aatgaaggg 317  Q
    |||||||||    
T  40528384 aatgaaggg 40528392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 11 - 179
Target Start/End: Original strand, 16908551 - 16908717
Alignment:
Q  11 caaaggataaaaattgacaatagctatttaaaaaagttgtgtaaaatgcatttcaagaaaccaattttatccataattgaccgtttactaaatagattaa 110  Q
    ||||||||||||||||||||||  |||||| |||||||| |||||||||||||||| || |||| |||||||||||||||| ||||||||||||||||||    
T  16908551 caaaggataaaaattgacaataattatttagaaaagttgggtaaaatgcatttcaaaaagccaaatttatccataattgactgtttactaaatagattaa 16908650  T
Q  111 taatgtcttttccaatgtaaaacaaataggttatttgcaagaaactcaatgtccatttaatttgtttat 179  Q
    |||||| |||| |||||| |||||||||||||| ||| |||||||| | |||||||||||||| |||||    
T  16908651 taatgtatttttcaatgt-aaacaaataggttacttgaaagaaact-attgtccatttaatttatttat 16908717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 11 - 158
Target Start/End: Original strand, 40360936 - 40361080
Alignment:
Q  11 caaaggataaaaattgacaatagctatttaaaaaagttgtgtaaaatgcatttcaagaaaccaattttatccataattgaccgtttactaaatagattaa 110  Q
    |||| |||||||||||| ||||| ||||||||||| ||| | ||||||| ||||||||   |||||||||||||||||||| |||||| |||||||||||    
T  40360936 caaatgataaaaattgaaaatagttatttaaaaaatttgggcaaaatgcttttcaagat--caattttatccataattgactgtttacaaaatagattaa 40361033  T
Q  111 taatgtcttttccaatgtaaaacaaataggttatttgcaagaaactca 158  Q
    |||||||||||   || | |||||||||||||||||||||||||||||    
T  40361034 taatgtcttttatgatct-aaacaaataggttatttgcaagaaactca 40361080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 176 - 317
Target Start/End: Original strand, 16908840 - 16908979
Alignment:
Q  176 ttatgttaattttcgacaactgaatttgtttggggtagctcaatgtttattatttggggtagccgaatattaatttacaccaacttattaaagattaata 275  Q
    |||||||||| ||| ||||||||||||||||||| ||||||||| ||||||||||| |||||||| |||| ||| || ||||||  | | |||| |||||    
T  16908840 ttatgttaatattcaacaactgaatttgtttggg-tagctcaatatttattatttgaggtagccggatataaatatataccaaccaaatgaagaataata 16908938  T
Q  276 tattttttggggtagccaaggctaccccttgtcaatgaaggg 317  Q
    | ||||||||||||||||||||| ||||||||| ||||||||    
T  16908939 t-ttttttggggtagccaaggctgccccttgtccatgaaggg 16908979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 16 - 144
Target Start/End: Complemental strand, 7009069 - 7008942
Alignment:
Q  16 gataaaaattgacaatagctatttaaaaaagttgtgtaaaatgcatttcaagaaaccaattttatccataattgaccgtttactaaatagattaataatg 115  Q
    ||||||||||||||||| |||||||| |||||||   |||||   ||||||||||||||||||||||||||  ||  |||||| ||||||||||||||||    
T  7009069 gataaaaattgacaatatctatttaacaaagttggacaaaatctgtttcaagaaaccaattttatccataaacgattgtttacaaaatagattaataatg 7008970  T
Q  116 tcttttccaatgtaaaacaaataggttat 144  Q
     |||||||||||| | |||||||||||||    
T  7008969 ccttttccaatgt-acacaaataggttat 7008942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 53 - 180
Target Start/End: Complemental strand, 34034230 - 34034105
Alignment:
Q  53 aaaatgcatttcaagaaaccaattttatccataattgaccgtttactaaatagattaataatgtcttttccaatgtaaaacaaataggttatttgcaaga 152  Q
    ||||||||||| ||||| ||||||| ||| |||| || | ||||| ||| |||||||||||||||||||| ||||||||  ||||| |||||||||||||    
T  34034230 aaaatgcatttgaagaacccaatttcatcaataactgtctgtttaataa-tagattaataatgtcttttcaaatgtaaat-aaataagttatttgcaaga 34034133  T
Q  153 aactcaatgtccatttaatttgtttatg 180  Q
    |||||| |||||||||||||||| ||||    
T  34034132 aactcattgtccatttaatttgtctatg 34034105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 54 - 175
Target Start/End: Original strand, 17695850 - 17695969
Alignment:
Q  54 aaatgcatttcaagaaaccaattttatccataattgaccgtttactaaatagattaataatgtcttttccaatgtaaaacaaataggttatttgcaagaa 153  Q
    |||||| ||||||||| ||||||| ||| ||||||||| ||||| ||| |||||||||||||| ||||| ||||||||  ||||| ||||||||||||||    
T  17695850 aaatgcgtttcaagaacccaatttcatcaataattgactgtttaataa-tagattaataatgttttttcaaatgtaaat-aaataagttatttgcaagaa 17695947  T
Q  154 actcaatgtccatttaatttgt 175  Q
    ||||| |||||||||| |||||    
T  17695948 actcactgtccatttagtttgt 17695969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 11 - 180
Target Start/End: Original strand, 19948752 - 19948915
Alignment:
Q  11 caaaggataaaaattgacaatagctatttaaaaaagttgtgtaaaatgcatttcaagaaaccaattttatccataattgaccgtttactaaatagattaa 110  Q
    |||| ||||||||||||||||| |||| || |||||||| | ||||||||||||||||| |    ||||||||||||| | ||||||| |||| || |||    
T  19948752 caaatgataaaaattgacaataactatatagaaaagttg-gcaaaatgcatttcaagaagc----tttatccataattaatcgtttacaaaatggaataa 19948846  T
Q  111 taatgtcttttccaatgtaaaacaaataggttatttgcaagaaactcaatgtccatttaatttgtttatg 180  Q
    |||| | || ||||||||||| ||| ||| |||||||||||||| ||| ||||||||||||  |||||||    
T  19948847 taatattttctccaatgtaaa-caactagattatttgcaagaaattcattgtccatttaataggtttatg 19948915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 175 - 245
Target Start/End: Complemental strand, 22099013 - 22098943
Alignment:
Q  175 tttatgttaattttcgacaactgaatttgtttggggtagctcaatgtttattatttggggtagccgaatat 245  Q
    ||||| |||||||||||||||| || ||||||||||||||||||| ||| |||||||||||||||||||||    
T  22099013 tttatcttaattttcgacaactaaacttgtttggggtagctcaatattttttatttggggtagccgaatat 22098943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 101 - 180
Target Start/End: Original strand, 41640054 - 41640132
Alignment:
Q  101 aatagattaataatgtcttttccaatgtaaaacaaataggttatttgcaagaaactcaatgtccatttaatttgtttatg 180  Q
    |||||||||||||||||||||| ||||||||  ||||| ||||||||||||||||||| ||| |||||||||||| ||||    
T  41640054 aatagattaataatgtcttttcaaatgtaaat-aaatatgttatttgcaagaaactcattgtacatttaatttgtctatg 41640132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 175 - 333
Target Start/End: Original strand, 3498684 - 3498842
Alignment:
Q  175 tttatgttaattttcgacaactgaatttgtttggggtagctcaatgtttattatttggggtagccgaatattaatttacaccaacttattaaagattaat 274  Q
    ||||||||||||||  |||| | ||||| |||||||||||| ||| ||| ||||||||||||||  ||||| ||   | |||||| |||| |||| ||||    
T  3498684 tttatgttaatttttaacaaataaatttatttggggtagctaaatattttttatttggggtagctaaatataaaaacataccaacatattcaagaataat 3498783  T
Q  275 atattttttggggtagccaaggctaccccttgtcaatgaagggatgcgcccctgcttgt 333  Q
    |  |||||||||||||||| ||||||| | ||  ||||||||||  |||||||| ||||    
T  3498784 actttttttggggtagccatggctacctcatgctaatgaagggaaccgcccctggttgt 3498842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 175 - 304
Target Start/End: Complemental strand, 34033967 - 34033839
Alignment:
Q  175 tttatgttaattttcgacaactgaatttgtttggggtagctcaatgtttattatttggggtagccgaatattaatttacaccaacttattaaagattaat 274  Q
    |||||| ||||||| | ||||| || ||||||| ||||||  ||||||||||| |||||||||||  |||| |||  | ||| ||| ||| |||| ||||    
T  34033967 tttatgctaatttttg-caactaaacttgtttgaggtagccaaatgtttattaattggggtagccagatatcaatacataccgactaattcaagaataat 34033869  T
Q  275 atattttttggggtagccaaggctacccct 304  Q
    || |||||||||||||||||||||||||||    
T  34033868 attttttttggggtagccaaggctacccct 34033839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 115 - 180
Target Start/End: Complemental strand, 13517644 - 13517580
Alignment:
Q  115 gtcttttccaatgtaaaacaaataggttatttgcaagaaactcaatgtccatttaatttgtttatg 180  Q
    |||||||| ||||||||  ||||||||||||||||||||||||| ||| |||||||||||| ||||    
T  13517644 gtcttttcaaatgtaaat-aaataggttatttgcaagaaactcattgtacatttaatttgtctatg 13517580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 115 - 180
Target Start/End: Original strand, 17768976 - 17769040
Alignment:
Q  115 gtcttttccaatgtaaaacaaataggttatttgcaagaaactcaatgtccatttaatttgtttatg 180  Q
    |||||||| ||||||||  ||||||||||||||||||||||||| ||| |||||||||||| ||||    
T  17768976 gtcttttcaaatgtaaat-aaataggttatttgcaagaaactcattgtacatttaatttgtctatg 17769040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 35 - 179
Target Start/End: Complemental strand, 42353304 - 42353164
Alignment:
Q  35 tatttaaaaaagttgtgtaaaatgcatttcaagaaaccaattttatccataattgaccgtttactaaatagattaataatgtcttttccaatgtaaaaca 134  Q
    ||||||||||| ||| | |||| | |||| | |||  |||||||||||||||||||| ||||| ||||||||||| |||||  |||| |||||| |||||    
T  42353304 tatttaaaaaatttgggcaaaacgtattttatgaagtcaattttatccataattgactgtttaataaatagattattaatg--tttttcaatgt-aaaca 42353208  T
Q  135 aataggttatttgcaagaaactcaatgtccatttaatttgtttat 179  Q
    || | ||||||| ||| ||||| | ||||| |||||| |||||||    
T  42353207 aacaagttattttcaa-aaacttattgtccttttaatctgtttat 42353164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 175 - 237
Target Start/End: Original strand, 19949035 - 19949097
Alignment:
Q  175 tttatgttaattttcgacaactgaatttgtttggggtagctcaatgtttattatttggggtag 237  Q
    |||||||||||||||||||||| || || ||||   ||||||||||||||||||| |||||||    
T  19949035 tttatgttaattttcgacaactaaacttatttgaaatagctcaatgtttattattcggggtag 19949097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 74 - 179
Target Start/End: Complemental strand, 14521753 - 14521651
Alignment:
Q  74 attttatccataattgaccgtttactaaatagattaataatgtcttttccaatgtaaaacaaataggttatttgcaagaaactcaatgtccatttaattt 173  Q
    |||||||||||||||||| ||||| |||||| |||| |||||| |||| |||||| ||||||| | |||||||||||  |||| | ||| | ||||||||    
T  14521753 attttatccataattgactgtttaataaatatattattaatgt-tttttcaatgt-aaacaaacaagttatttgcaa-caacttattgtacttttaattt 14521657  T
Q  174 gtttat 179  Q
    ||||||    
T  14521656 gtttat 14521651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 278 - 328
Target Start/End: Complemental strand, 7008811 - 7008761
Alignment:
Q  278 ttttttggggtagccaaggctaccccttgtcaatgaagggatgcgcccctg 328  Q
    ||||||| ||||||||||||||||||||  ||||||| |||| ||||||||    
T  7008811 ttttttgaggtagccaaggctaccccttcacaatgaaaggatacgcccctg 7008761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 17 - 49
Target Start/End: Original strand, 3498391 - 3498423
Alignment:
Q  17 ataaaaattgacaatagctatttaaaaaagttg 49  Q
    |||||||||||||||| ||||||||||||||||    
T  3498391 ataaaaattgacaataactatttaaaaaagttg 3498423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 175 - 238
Target Start/End: Complemental strand, 42353054 - 42352990
Alignment:
Q  175 tttatgttaattttcgacaactgaa-tttgtttggggtagctcaatgtttattatttggggtagc 238  Q
    |||||| |||||||||||||   || ||| |||||||||||||||| |||||||||||| |||||    
T  42353054 tttatgctaattttcgacaaaccaagtttatttggggtagctcaatatttattatttggagtagc 42352990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0186 (Bit Score: 86; Significance: 7e-41; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 11 - 180
Target Start/End: Complemental strand, 22893 - 22726
Alignment:
Q  11 caaaggataaaaattgacaatagctatttaaaaaagttgtgtaaaatgcatttcaagaaaccaattttatccataattgaccgtttactaaatagattaa 110  Q
    |||| ||||||||||||||||| ||||||| |||| |||   |||||| ||||||||||  ||||||||| |||||||||  |||||| |||||||||||    
T  22893 caaatgataaaaattgacaataactatttagaaaatttggacaaaatg-atttcaagaagtcaattttattcataattgattgtttacaaaatagattaa 22795  T
Q  111 taatgtcttttccaatgtaaaacaaataggttatttgcaagaaactcaatgtccatttaatttgtttatg 180  Q
    |||||| ||||||||||| ||||||||||||||||||||||||| |||||| ||||||||| ||||||||    
T  22794 taatgttttttccaatgt-aaacaaataggttatttgcaagaaattcaatgcccatttaatatgtttatg 22726  T

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Target: scaffold0361 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 175 - 315
Target Start/End: Complemental strand, 7056 - 6917
Alignment:
Q  175 tttatgttaattttcgacaactgaatttgtttggggtagctcaatgtttattatttggggtagccgaatattaatttacaccaacttattaaagattaat 274  Q
    |||||| ||||||||||||||| |||||||||||| ||||||||| |||||||||| || |||||| |||| |||||| |||||   ||| |||| ||||    
T  7056 tttatgctaattttcgacaactaaatttgtttggg-tagctcaatatttattatttaggttagccggatataaatttataccaaacaattgaagaataat 6958  T
Q  275 atattttttggggtagccaaggctaccccttgtcaatgaag 315  Q
    |||||||| |||||||||||||||||| ||| || ||||||    
T  6957 atatttttgggggtagccaaggctacctcttatctatgaag 6917  T

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Target: scaffold0002 (Bit Score: 56; Significance: 5e-23; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 84 - 179
Target Start/End: Original strand, 428333 - 428426
Alignment:
Q  84 taattgaccgtttactaaatagattaataatgtcttttccaatgtaaaacaaataggttatttgcaagaaactcaatgtccatttaatttgtttat 179  Q
    |||||||| |||||||||||||||||||||||| ||||||||||| || ||||||| ||||||| |||||||| | ||||||||||||||||||||    
T  428333 taattgactgtttactaaatagattaataatgtattttccaatgt-aagcaaatagattatttgtaagaaact-attgtccatttaatttgtttat 428426  T

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Target: scaffold0002; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 175 - 238
Target Start/End: Original strand, 428548 - 428611
Alignment:
Q  175 tttatgttaattttcgacaactgaatttgtttggggtagctcaatgtttattatttggggtagc 238  Q
    ||||| |||||||| ||||||||||||| ||| |||||||||||||||||||||||| ||||||    
T  428548 tttatattaatttttgacaactgaatttatttagggtagctcaatgtttattatttgaggtagc 428611  T

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Target: scaffold0110 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 175 - 237
Target Start/End: Original strand, 7097 - 7159
Alignment:
Q  175 tttatgttaattttcgacaactgaatttgtttggggtagctcaatgtttattatttggggtag 237  Q
    ||||| ||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||    
T  7097 tttatcttaattttcgacaactgaacttgtttggggtaactcaatgtttattatttggggtag 7159  T

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Target: scaffold0005 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 34 - 180
Target Start/End: Original strand, 292188 - 292332
Alignment:
Q  34 ctatttaaaaaagttgtgtaaaatgcatttcaagaaaccaattttatccataattgaccgtttactaaatagattaataatgtcttttccaatgtaaaac 133  Q
    ||||||| ||| |||| | ||||||  ||||||||| ||||||| ||| ||||||| | ||||| ||| |||||||||| ||||||||| ||| ||||      
T  292188 ctatttagaaacgttgggcaaaatgtgtttcaagaacccaatttcatcaataattgcctgtttaataa-tagattaatagtgtcttttcaaatataaat- 292285  T
Q  134 aaataggttatttgcaagaaactcaatgtccatttaatttgtttatg 180  Q
    |||||||||||| |||||||||||| ||| |||||||||||| ||||    
T  292286 aaataggttattcgcaagaaactcattgttcatttaatttgtctatg 292332  T

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Target: scaffold0481 (Bit Score: 46; Significance: 5e-17; HSPs: 2)
Name: scaffold0481
Description:

Target: scaffold0481; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 107 - 180
Target Start/End: Complemental strand, 6773 - 6701
Alignment:
Q  107 ttaataatgtcttttccaatgtaaaacaaataggttatttgcaagaaactcaatgtccatttaatttgtttatg 180  Q
    |||||||||||||||| ||||||||  ||||||||||||||||||||| ||| |||||||||||||||| ||||    
T  6773 ttaataatgtcttttcaaatgtaaat-aaataggttatttgcaagaaattcattgtccatttaatttgtctatg 6701  T

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Target: scaffold0481; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 198 - 244
Target Start/End: Complemental strand, 6562 - 6516
Alignment:
Q  198 aatttgtttggggtagctcaatgtttattatttggggtagccgaata 244  Q
    ||||||||||| |||||||||| ||||||||||| ||||||||||||    
T  6562 aatttgtttggagtagctcaatatttattatttgaggtagccgaata 6516  T

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Target: scaffold1554 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: scaffold1554
Description:

Target: scaffold1554; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 40 - 158
Target Start/End: Complemental strand, 935 - 819
Alignment:
Q  40 aaaaaagttgtgtaaaatgcatttcaagaaaccaattttatccataattgaccgtttactaaatagattaataatgtcttttccaatgtaaaacaaatag 139  Q
    ||||| |||| | ||||||||||||||||| ||||||| ||| |||| || | ||||| | |||||||||||||| |||||||  |||| | | ||||||    
T  935 aaaaatgttgggcaaaatgcatttcaagaacccaatttcatcaataaatgtctgtttaat-aatagattaataatatcttttcagatgt-atataaatag 838  T
Q  140 gttatttgcaagaaactca 158  Q
    |||||||||| ||||||||    
T  837 gttatttgcatgaaactca 819  T

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Target: scaffold0271 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0271
Description:

Target: scaffold0271; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 175 - 288
Target Start/End: Complemental strand, 20255 - 20141
Alignment:
Q  175 tttatgttaattttcgacaa-ctgaatttgtttggggtagctcaatgtttattatttggggtagccgaatattaatttacaccaacttattaaagattaa 273  Q
    |||||| ||||||||||||| |  ||||| |||||||||||||||| |||||||||||| |||||  ||| | | |||| ||||||  ||| || | |||    
T  20255 tttatgctaattttcgacaaaccaaatttatttggggtagctcaatatttattatttggagtagctaaatgtaattttataccaaccaattcaaaaataa 20156  T
Q  274 tatattttttggggt 288  Q
    | |||||||||||||    
T  20155 tttattttttggggt 20141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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