View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1369_high_2 (Length: 789)
Name: NF1369_high_2
Description: NF1369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1369_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 702; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 702; E-Value: 0
Query Start/End: Original strand, 6 - 760
Target Start/End: Complemental strand, 34630145 - 34629393
Alignment:
| Q |
6 |
agaaacaaaggggccagtgctcttgtagatttgtgcaaggcgtttatatctgcttttgacagtttgataagcacagatgggtaagaaaaccatttctcag |
105 |
Q |
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|||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34630145 |
agaaacgaaggggccagtgctcttgtagatttgtgcgaggcgtttatatctgcttttgacagtttgataagcacagatgggtaagaaaaccatttctcag |
34630046 |
T |
|
| Q |
106 |
gattttaacttttaaatcgcttgcttggttttgcatctatctttgtctgatttgggatattatggcttgttctacttaaacaatgttaattgagcttgat |
205 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34630045 |
gattttaacttttaaatcgcttgcttggttttgcatctatctttgtctgatttgggatattatggcttgttctacttaaacaatgttaattgagcttgat |
34629946 |
T |
|
| Q |
206 |
tccatacttggattatctatattaagactttgaattttgaacagatcctgaaaatccagaattttcatatataatctgtagaaaatattttgtttagttt |
305 |
Q |
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|||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34629945 |
tccatacttgcattatctatatcaagactttgaattttgaacagatcctgaaaatccagaattttcatatataatctgtagaaaatattttgtttagttt |
34629846 |
T |
|
| Q |
306 |
attggcatcgttcaaatttgttttctgtcataatgtagggatttggagatactgtccattgggaaagaggcactatttactgcagcaactgttgtctcca |
405 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
34629845 |
attggcatcgttcaaatttgttttctgtcataatgtagggatttggagatactgtccattgggaaagaggcactatttactgcagcaactgttatctcca |
34629746 |
T |
|
| Q |
406 |
taaagtcataggagcgtaaataacagcactgaattttgcatcgactttattagctttattactcattcttctttaaatgaatgtgttcactttgatcaac |
505 |
Q |
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|||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34629745 |
taaagtcataggagcgtaaataacagcactgaatttcgcattgactttattagctttattactcattcttctttaaatgaatgtgttcactttgatcaac |
34629646 |
T |
|
| Q |
506 |
tcattctttattggagtctgaggctttgtaggttaggttaaatgcaagaaatacttttccatagggaaattttgtaccttgtctcactgaatgatttata |
605 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34629645 |
tcattctttattggagtctgaggctttgtaggttaggttaaatgcaagaaatacttttccatagggaaattttgtaccttgtctcactgaatgatttata |
34629546 |
T |
|
| Q |
606 |
atggcaatatcccaaaccactttaagagtaagtta-atgattggaatattacaattgaaaatgattttagatcgtatcatttgatactaataatatcgtg |
704 |
Q |
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| T |
34629545 |
atggcaatatcccaaaccagtttaagagtaagttacatgattggaatattacaattgaaaatgattttagatcgtatcatttgatac---taatatcgtg |
34629449 |
T |
|
| Q |
705 |
atgtatgataatgttatttgtcaaattatcatttatatattgattatgaatactgc |
760 |
Q |
| |
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| T |
34629448 |
atgtatgataatgttatttgtcaaattatcatttatatattgattatgaatactgc |
34629393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 127; Significance: 4e-65; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 127; E-Value: 4e-65
Query Start/End: Original strand, 232 - 526
Target Start/End: Complemental strand, 14298694 - 14298414
Alignment:
| Q |
232 |
actttgaattttgaacagatcctgaaaatccagaattttcatatataatctgtagaaaatattttgtttagtttattggcatcgttcaaatttgttttct |
331 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||||||||||||| || | ||||||||| ||||||| |
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| T |
14298694 |
actttgaattttgaacagatcctgaaaatccagaattttcatatataacctgttgaaaacattttgtttagtttaccggaaaagttcaaattagttttct |
14298595 |
T |
|
| Q |
332 |
gtcataatgtagggatttggagatactgtccattgggaaagaggcactatttactgcagcaactgttgtctccataaagtcataggagcgtaaataacag |
431 |
Q |
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||| ||||| ||| || ||||||||||||||||||| |||||||||||||||||||||||| |||| ||||||| |||||||||||| |||||||||| |
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| T |
14298594 |
gtcttaatgcaggaatatggagatactgtccattggaaaagaggcactatttactgcagcatgtgttatctccatgaagtcataggagtgtaaataacaa |
14298495 |
T |
|
| Q |
432 |
cactgaattttgcatcgactttattagctttattactcattcttctttaaatgaatgtgttcactttgatcaactcattctttattggagtctga |
526 |
Q |
| |
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|| |||| |||||||| |||| | | || ||| ||||| |||||||||||| |||||||||||||||||||||||||||||| |
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| T |
14298494 |
cattgaa------------tttattagttttaatcattat--ttccttaaaggaatgtgttcacattgatcaactcattctttattggagtctga |
14298414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 20 - 135
Target Start/End: Complemental strand, 14298857 - 14298744
Alignment:
| Q |
20 |
cagtgctcttgtagatttgtgcaaggcgtttatatctgcttttgacagtttgataagcacagatgggtaagaaaaccatttctcaggattttaactttta |
119 |
Q |
| |
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|||||||||||||||||||||| || |||||||||| ||||||| ||||||| |||||||||||||||||||||||||||||||||||| |||| || |
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| T |
14298857 |
cagtgctcttgtagatttgtgccgggagtttatatctacttttgagagtttgagaagcacagatgggtaagaaaaccatttctcaggattataac--gta |
14298760 |
T |
|
| Q |
120 |
aatcgcttgcttggtt |
135 |
Q |
| |
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|||||||| ||||||| |
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| T |
14298759 |
aatcgcttccttggtt |
14298744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 716 - 758
Target Start/End: Complemental strand, 14298255 - 14298213
Alignment:
| Q |
716 |
tgttatttgtcaaattatcatttatatattgattatgaatact |
758 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||| |||||| |
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| T |
14298255 |
tgttatttgtcaaattattatttatatattgattataaatact |
14298213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 652 - 688
Target Start/End: Complemental strand, 14298343 - 14298307
Alignment:
| Q |
652 |
attacaattgaaaatgattttagatcgtatcatttga |
688 |
Q |
| |
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||||||||||||||||||||||||| ||||||||||| |
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| T |
14298343 |
attacaattgaaaatgattttagatagtatcatttga |
14298307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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