View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1369_high_25 (Length: 440)
Name: NF1369_high_25
Description: NF1369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1369_high_25 |
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Alignment Details
Target: chr4 (Bit Score: 369; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 20 - 430
Target Start/End: Complemental strand, 55674864 - 55674459
Alignment:
| Q |
20 |
agaacgaacctattctcatatatactatgttgatttt-gtgatttctgaccacactcatctctatttataataagatacaattttcttatttaaatccta |
118 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55674864 |
agaacgaacctattctcatatatactatgttgatttttgtgatttctgaccacactcatctctatttataataagatacaattttcttatttaaatccta |
55674765 |
T |
|
| Q |
119 |
atttatgattctaatcctaatataaatatatggatttcattctaacactttctatatgcaatttattgtctcaatgatctttggaaaatacctttcttaa |
218 |
Q |
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||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55674764 |
atttatgattctaatcctaatataaatatatggatat------aacactttctatatgcaatttattgtctcaatgatctttggaaaatacctttcttaa |
55674671 |
T |
|
| Q |
219 |
ctgaacttgtttggtttgttatttatcttaatttattttgttggcctcttaatgtagaacataattgattttcatgatagtaccaaaattgtatcatgca |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| |
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| T |
55674670 |
ctgaacttgtttggtttgttatttatcttaatttattttgttggcctcttaatgtagaacataattaattttcatgatagtagcaaaattgtatcatgca |
55674571 |
T |
|
| Q |
319 |
ctttagtttgcgaaagacaaaaataattctcactatcagtttatactgatctaattttggggtcatgataattaatttatcactgaaatatatttcatat |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55674570 |
ctttagtttgcgaaagacaaaaataattctcactatcagtttatactgatctaattttggggtcatgataattaatttatcactgaaatatatttcatat |
55674471 |
T |
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| Q |
419 |
cttgtgatgatg |
430 |
Q |
| |
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|||||||||||| |
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| T |
55674470 |
cttgtgatgatg |
55674459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 111 - 155
Target Start/End: Original strand, 20699355 - 20699399
Alignment:
| Q |
111 |
aaatcctaatttatgattctaatcctaatataaatatatggattt |
155 |
Q |
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|||| ||||| ||||||||||||||||||| | |||||||||||| |
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| T |
20699355 |
aaatactaatctatgattctaatcctaataaatatatatggattt |
20699399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 99 - 155
Target Start/End: Original strand, 19705206 - 19705263
Alignment:
| Q |
99 |
attttcttatttaaatcctaatttatgattctaatcctaat-ataaatatatggattt |
155 |
Q |
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||||||| ||| ||||||||||||||||||||||| || || |||||||||||||||| |
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| T |
19705206 |
attttctaattcaaatcctaatttatgattctaatgctgataataaatatatggattt |
19705263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 111 - 160
Target Start/End: Original strand, 43792661 - 43792711
Alignment:
| Q |
111 |
aaatcctaatttatgattctaatcctaat-ataaatatatggatttcattc |
160 |
Q |
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|||||||||| ||||||| |||||||||| |||||||||||||||| |||| |
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| T |
43792661 |
aaatcctaatctatgattttaatcctaataataaatatatggatttgattc |
43792711 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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