View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1369_high_29 (Length: 422)
Name: NF1369_high_29
Description: NF1369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1369_high_29 |
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Alignment Details
Target: chr5 (Bit Score: 299; Significance: 1e-168; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 30 - 356
Target Start/End: Original strand, 13652976 - 13653302
Alignment:
| Q |
30 |
catgacatggctcgaatctcaaccgttgaagtcagttgtatatgttagctttggaagcaccacaacaatgacgagagaagaaatacttgagttttggcac |
129 |
Q |
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| T |
13652976 |
catgacatggctcgaatctcaaccgttgaagtcagttgtatatgttagctttggaagcaccacaacaatgacgagagaagaaatacttgagttttggcac |
13653075 |
T |
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| Q |
130 |
ggtttgttaaacagcaaaaaagcattcttgtgggtgattagaccaaacatggtacaagaaaaaacactaataaaagaacttaaggaaaggactactaagg |
229 |
Q |
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| T |
13653076 |
ggtttgttgaacagcaaaaaagcattcttgtgggtgattagaccaaacatggtacaagaaaaaagactaataaaagaacttgaggaagggactagtaagg |
13653175 |
T |
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| Q |
230 |
agagaggtttgattgtggagtgggctccacaagaggaagttttgtcacatgaggcaattggtgcttttttgacacatagtggatggaattctactttgga |
329 |
Q |
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| T |
13653176 |
agaaaggtttgattgtggagtgggctccacaagaggaagttttgtcacataaggcaattggtgcttttttgacacatagtggatggaattctactttgga |
13653275 |
T |
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| Q |
330 |
gagtgtggtttgtggtgtgcctatgat |
356 |
Q |
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| T |
13653276 |
gagtgtggtttgtggtgtgcctatgat |
13653302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 30 - 357
Target Start/End: Original strand, 13658449 - 13658776
Alignment:
| Q |
30 |
catgacatggctcgaatctcaaccgttgaagtcagttgtatatgttagctttggaagcaccacaacaatgacgagagaagaaatacttgagttttggcac |
129 |
Q |
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| T |
13658449 |
catgacatggcttgaatctcaaccgttgaaatcggttgtatatgttagctttggtagcatcaccccaatgaagggagaagaaatcattgagatttggcac |
13658548 |
T |
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| Q |
130 |
ggtttgttaaacagcaaaaaagcattcttgtgggtgattagaccaaacatggtacaagaaaaaacactaataaaagaacttaaggaaaggactactaagg |
229 |
Q |
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| T |
13658549 |
ggtttattgaatagcaaaaaaccatttttgtgggtgattaggccaaacatggtacaagaaaaaggactattgaaggagcttgaggaagggactactaaag |
13658648 |
T |
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| Q |
230 |
agagaggtttgattgtggagtgggctccacaagaggaagttttgtcacatgaggcaattggtgcttttttgacacatagtggatggaattctactttgga |
329 |
Q |
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||| ||| ||||||||| ||||| |||||||||||||||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
13658649 |
agaaagggatgattgtggggtgggttccacaagaggaagttttgtcacacaaagcaattggtgcctttttgacacatagtggatggaattctactttgga |
13658748 |
T |
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| Q |
330 |
gagtgtggtttgtggtgtgcctatgata |
357 |
Q |
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| T |
13658749 |
gagtgtggtttgtggtgtgcctatgata |
13658776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 37 - 357
Target Start/End: Original strand, 13647928 - 13648248
Alignment:
| Q |
37 |
tggctcgaatctcaaccgttgaagtcagttgtatatgttagctttggaagcaccacaacaatgacgagagaagaaatacttgagttttggcacggtttgt |
136 |
Q |
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||||| || |||||||| ||||| |||||| |||||||||||||||||||||| ||| |||||| ||||||||||||| ||||| ||||||| ||||| | |
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| T |
13647928 |
tggcttgactctcaaccattgaaatcagttatatatgttagctttggaagcactacaccaatgaagagagaagaaataattgagatttggcatggtttat |
13648027 |
T |
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| Q |
137 |
taaacagcaaaaaagcattcttgtgggtgattagaccaaacatggtacaagaaaaaacactaataaaagaacttaaggaaaggactactaaggagagagg |
236 |
Q |
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| T |
13648028 |
tgaatagcaaaaaacagtttttatgggtgattaggccaaacatggtacaagaaaaaggattattaagtgagcttgaggaagggactcgtaaggaaaaagg |
13648127 |
T |
|
| Q |
237 |
tttgattgtggagtgggctccacaagaggaagttttgtcacatgaggcaattggtgcttttttgacacatagtggatggaattctactttggagagtgtg |
336 |
Q |
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| T |
13648128 |
tttgattgttgggtgggtcccacaagaggaagttttgtcacataaggcaattggtgcttttttgacacataatgggtggaattcaactttggaaagtgtg |
13648227 |
T |
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| Q |
337 |
gtttgtggtgtgcctatgata |
357 |
Q |
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||||||||||||||||||||| |
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| T |
13648228 |
gtttgtggtgtgcctatgata |
13648248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 320
Target Start/End: Complemental strand, 20156911 - 20156862
Alignment:
| Q |
271 |
ttgtcacatgaggcaattggtgcttttttgacacatagtggatggaattc |
320 |
Q |
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| T |
20156911 |
ttgtcacataaagcaataggtgcatttttgacacattgtggatggaattc |
20156862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 284 - 356
Target Start/End: Complemental strand, 894534 - 894462
Alignment:
| Q |
284 |
caattggtgcttttttgacacatagtggatggaattctactttggagagtgtggtttgtggtgtgcctatgat |
356 |
Q |
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| T |
894534 |
caattggtggttttttgagtcattgtggttggggttcaactttggagagtgtggttaatggtgtgcctatgat |
894462 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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