View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1369_high_32 (Length: 401)

Name: NF1369_high_32
Description: NF1369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1369_high_32
NF1369_high_32
[»] chr3 (5 HSPs)
chr3 (1-401)||(46995180-46995580)
chr3 (82-401)||(46980447-46980766)
chr3 (94-401)||(46974470-46974777)
chr3 (75-401)||(46997514-46997840)
chr3 (85-395)||(47001187-47001498)


Alignment Details
Target: chr3 (Bit Score: 381; Significance: 0; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 1 - 401
Target Start/End: Original strand, 46995180 - 46995580
Alignment:
Q  1 tcaaccaacatgtccattcgaaccactataggagaccgcaaccactcttccactaattgtcgcacaactctgtgatcatattttgcaatagccagatgaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  46995180 tcaaccaacatgtccattcgaaccactataggagaccgcaaccactcttccactaattgtcgcacaactctgtgatcatattttgcaatagctagatgaa 46995279  T
Q  101 tcttccatgctgccaatcctagtccattctccagcaactcaccttttgttgtttcagtgctcactgcataaactgaattcccaaaatattccttaggaag 200  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  46995280 tcttccatgatgccaatcctagtccattctccagcaactcaccttttgttgtttcagtgctcactgcgtaaactgaattcccaaaatattccttaggaag 46995379  T
Q  201 agacggttccattctcgttcggttgtttatagccaatttgcaagtcgttctctgatcatggtgtagtcgacgcacacgagttatagatctccaaactagt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46995380 agacggttccattctcgttcggttgtttatagccaatttgcaagtcgttctctgatcatggtgtagtcgacgcacacgagttatagatctccaaactagt 46995479  T
Q  301 gcagataaagattgaaacgaagagattttcgttgtctcgcactctttgtttgcctttgctttaagttttgctatagactctgctgaaaaatggaagattc 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||    
T  46995480 gcagataaagattgaaacgaagagattttcgttgtctcgcactctttgtttgcctttgctttgagttttgctataaactctgctgaaaaatggaagattc 46995579  T
Q  401 t 401  Q
    |    
T  46995580 t 46995580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 82 - 401
Target Start/End: Original strand, 46980447 - 46980766
Alignment:
Q  82 tttgcaatagccagatgaatcttccatgctgccaatcctagtccattctccagcaactcaccttttgttgtttcagtgctcactgcataaactgaattcc 181  Q
    ||||||||||||| |||||| |||||||||||| |||||||  |||||||||||||||| |||   || |||||||  |||||| |||||| ||||||||    
T  46980447 tttgcaatagccacatgaattttccatgctgcccatcctagatcattctccagcaactctcctaccgtcgtttcagcactcactacataaagtgaattcc 46980546  T
Q  182 caaaatattccttaggaagagacggttccattctcgttcggttgtttatagccaatttgcaagtcgttctctgatcatggtgtagtcgacgcacacgagt 281  Q
    |||||||||||||||||||||  ||||||||||| |||||||||||| |||||| ||||||||| ||||||||| | || |||||| ||||  || ||||    
T  46980547 caaaatattccttaggaagaggtggttccattcttgttcggttgtttgtagccattttgcaagttgttctctgaccgtgttgtagttgacgtgcatgagt 46980646  T
Q  282 tatagatctccaaactagtgcagataaagattgaaacgaagagattttcgttgtctcgcactctttgtttgcctttgctttaagttttgctatagactct 381  Q
    ||||||||||||||||| ||| |||||||||||||||||||| |||||  |||| |   |||||   ||||||||||||||||||||||||||||| ||     
T  46980647 tatagatctccaaactaatgctgataaagattgaaacgaagaaattttgtttgtattagactctgcatttgcctttgctttaagttttgctatagattcc 46980746  T
Q  382 gctgaaaaatggaagattct 401  Q
     |||||||||||||||||||    
T  46980747 actgaaaaatggaagattct 46980766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 94 - 401
Target Start/End: Original strand, 46974470 - 46974777
Alignment:
Q  94 agatgaatcttccatgctgccaatcctagtccattctccagcaactcaccttttgttgtttcagtgctcactgcataaactgaattcccaaaatattcct 193  Q
    |||||||| |||||||||||| |||||||  ||||||||||||| || |||   || |||||||  ||||| |||| || ||||||||||||||||||||    
T  46974470 agatgaattttccatgctgcccatcctagatcattctccagcaattcccctaccgtcgtttcagcactcaccgcatgaagtgaattcccaaaatattcct 46974569  T
Q  194 taggaagagacggttccattctcgttcggttgtttatagccaatttgcaagtcgttctctgatcatggtgtagtcgacgcacacgagttatagatctcca 293  Q
    | |||||||  |||||||||||||||||||||||| |||||| ||||||||| ||||||||| | || |||||| ||||  |||||||||||||||||||    
T  46974570 tcggaagaggtggttccattctcgttcggttgtttgtagccagtttgcaagttgttctctgaccgtgttgtagttgacgtgcacgagttatagatctcca 46974669  T
Q  294 aactagtgcagataaagattgaaacgaagagattttcgttgtctcgcactctttgtttgcctttgctttaagttttgctatagactctgctgaaaaatgg 393  Q
    ||||| ||| |||||||||||||||||||| |||||  |||| |   ||||||  |||||||||||||| |||||   ||||||||| ||||||||||||    
T  46974670 aactaatgctgataaagattgaaacgaagaaatttttcttgtattagactcttcatttgcctttgctttcagtttcattatagactcagctgaaaaatgg 46974769  T
Q  394 aagattct 401  Q
    ||||||||    
T  46974770 aagattct 46974777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 75 - 401
Target Start/End: Original strand, 46997514 - 46997840
Alignment:
Q  75 atcatattttgcaatagccagatgaatcttccatgctgccaatcctagtccattctccagcaactcaccttttgttgtttcagtgctcactgcataaact 174  Q
    |||||| |||||||||||||| |||||||||||||||||| |||||||  |||| |||||||| || |||   ||||||||||  |||||||| || |      
T  46997514 atcataatttgcaatagccaggtgaatcttccatgctgcccatcctagatcattttccagcaattcccctaccgttgtttcagccctcactgcgtagatg 46997613  T
Q  175 gaattcccaaaatattccttaggaagagacggttccattctcgttcggttgtttatagccaatttgcaagtcgttctctgatcatggtgtagtcgacgca 274  Q
    ||||||||||||||||||||||||||||  |||||||||||||||||||||||||  |||||||||||||| ||||  ||| | || ||||   ||||      
T  46997614 gaattcccaaaatattccttaggaagaggtggttccattctcgttcggttgtttacggccaatttgcaagttgttcgttgaccttgttgtaactgacgtg 46997713  T
Q  275 cacgagttatagatctccaaactagtgcagataaagattgaaacgaagagattttcgttgtctcgcactctttgtttgcctttgctttaagttttgctat 374  Q
    |||| |||| |||||||||||||||||| ||||| |||||||| |||||||||||  |||| ||  |||||||||| || |||||||||||||| || ||    
T  46997714 cacgcgttagagatctccaaactagtgctgataaggattgaaaagaagagattttgtttgtatcagactctttgttagcttttgctttaagtttcgcaat 46997813  T
Q  375 agactctgctgaaaaatggaagattct 401  Q
    |||||||||||||||||| || |||||    
T  46997814 agactctgctgaaaaatgaaatattct 46997840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 85 - 395
Target Start/End: Original strand, 47001187 - 47001498
Alignment:
Q  85 gcaatagccagatgaatcttccatgctgccaatcctagtccattctccagcaactcaccttttgttgtttcagtgctcactgcataaactgaattcccaa 184  Q
    |||||||||||||||||||||||||||||| ||||||   |||||   | |||||| |||  |||||||||||  |  ||||| | ||  ||||||||||    
T  47001187 gcaatagccagatgaatcttccatgctgcccatcctaaatcattcctgaacaactcccctactgttgtttcagcaccaactgcgtgaatcgaattcccaa 47001286  T
Q  185 aatattccttaggaagagacggttccattctcgttcggttgtttatagccaatttgcaagtcgttctctgatcatggtgtagtcgacgcacacgagttat 284  Q
    ||||||| || ||||||| |||||| ||||| ||||||||||||| || ||| || ||||| ||||| ||| |    ||| || |||   ||||||||||    
T  47001287 aatattcatttggaagaggcggttctattctagttcggttgtttaaagacaacttacaagttgttctttgaccgcattgttgttgacatgcacgagttat 47001386  T
Q  285 agatctccaaactagtgcagataaagattgaaacgaagagattttcgttgtctcgcactctttgtttgcctttg-ctttaagttttgctatagactctgc 383  Q
    |||||||||||||||||| ||||||||||||||||||||||||||  |||| ||  |||||||||| || |||| |||||||||| ||||||||||||||    
T  47001387 agatctccaaactagtgctgataaagattgaaacgaagagattttgtttgtatcaaactctttgttagcttttgcctttaagtttcgctatagactctgc 47001486  T
Q  384 tgaaaaatggaa 395  Q
    ||||||||||||    
T  47001487 tgaaaaatggaa 47001498  T

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