View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1369_high_42 (Length: 353)
Name: NF1369_high_42
Description: NF1369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1369_high_42 |
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Alignment Details
Target: chr5 (Bit Score: 285; Significance: 1e-160; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 30 - 346
Target Start/End: Original strand, 13652976 - 13653292
Alignment:
| Q |
30 |
catgacatggctcgaatctcaaccgttgaagtcagttgtatatgttagctttggaagcaccacaacaatgacgagagaagaaatacttgagttttggcac |
129 |
Q |
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| T |
13652976 |
catgacatggctcgaatctcaaccgttgaagtcagttgtatatgttagctttggaagcaccacaacaatgacgagagaagaaatacttgagttttggcac |
13653075 |
T |
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| Q |
130 |
ggtttgttaaacagcaaaaaagcattcttgtgggtgattagaccaaacatggtacaagaaaaaacactaataaaagaacttaaggaaaggactactaagg |
229 |
Q |
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| T |
13653076 |
ggtttgttgaacagcaaaaaagcattcttgtgggtgattagaccaaacatggtacaagaaaaaagactaataaaagaacttgaggaagggactagtaagg |
13653175 |
T |
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| Q |
230 |
agagaggtttgattgtggagtgggctccacaagaggaagttttgtcacatgaggcaattggtgcttttttgacacatagtggatggaattctactttgga |
329 |
Q |
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| T |
13653176 |
agaaaggtttgattgtggagtgggctccacaagaggaagttttgtcacataaggcaattggtgcttttttgacacatagtggatggaattctactttgga |
13653275 |
T |
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| Q |
330 |
gagtgtggtctgtggtg |
346 |
Q |
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| T |
13653276 |
gagtgtggtttgtggtg |
13653292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 30 - 346
Target Start/End: Original strand, 13658449 - 13658765
Alignment:
| Q |
30 |
catgacatggctcgaatctcaaccgttgaagtcagttgtatatgttagctttggaagcaccacaacaatgacgagagaagaaatacttgagttttggcac |
129 |
Q |
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| T |
13658449 |
catgacatggcttgaatctcaaccgttgaaatcggttgtatatgttagctttggtagcatcaccccaatgaagggagaagaaatcattgagatttggcac |
13658548 |
T |
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| Q |
130 |
ggtttgttaaacagcaaaaaagcattcttgtgggtgattagaccaaacatggtacaagaaaaaacactaataaaagaacttaaggaaaggactactaagg |
229 |
Q |
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| T |
13658549 |
ggtttattgaatagcaaaaaaccatttttgtgggtgattaggccaaacatggtacaagaaaaaggactattgaaggagcttgaggaagggactactaaag |
13658648 |
T |
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| Q |
230 |
agagaggtttgattgtggagtgggctccacaagaggaagttttgtcacatgaggcaattggtgcttttttgacacatagtggatggaattctactttgga |
329 |
Q |
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||| ||| ||||||||| ||||| |||||||||||||||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
13658649 |
agaaagggatgattgtggggtgggttccacaagaggaagttttgtcacacaaagcaattggtgcctttttgacacatagtggatggaattctactttgga |
13658748 |
T |
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| Q |
330 |
gagtgtggtctgtggtg |
346 |
Q |
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| T |
13658749 |
gagtgtggtttgtggtg |
13658765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 37 - 346
Target Start/End: Original strand, 13647928 - 13648237
Alignment:
| Q |
37 |
tggctcgaatctcaaccgttgaagtcagttgtatatgttagctttggaagcaccacaacaatgacgagagaagaaatacttgagttttggcacggtttgt |
136 |
Q |
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||||| || |||||||| ||||| |||||| |||||||||||||||||||||| ||| |||||| ||||||||||||| ||||| ||||||| ||||| | |
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| T |
13647928 |
tggcttgactctcaaccattgaaatcagttatatatgttagctttggaagcactacaccaatgaagagagaagaaataattgagatttggcatggtttat |
13648027 |
T |
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| Q |
137 |
taaacagcaaaaaagcattcttgtgggtgattagaccaaacatggtacaagaaaaaacactaataaaagaacttaaggaaaggactactaaggagagagg |
236 |
Q |
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| T |
13648028 |
tgaatagcaaaaaacagtttttatgggtgattaggccaaacatggtacaagaaaaaggattattaagtgagcttgaggaagggactcgtaaggaaaaagg |
13648127 |
T |
|
| Q |
237 |
tttgattgtggagtgggctccacaagaggaagttttgtcacatgaggcaattggtgcttttttgacacatagtggatggaattctactttggagagtgtg |
336 |
Q |
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||||||||| | ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |||||||| |||||||| |||||| |
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| T |
13648128 |
tttgattgttgggtgggtcccacaagaggaagttttgtcacataaggcaattggtgcttttttgacacataatgggtggaattcaactttggaaagtgtg |
13648227 |
T |
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| Q |
337 |
gtctgtggtg |
346 |
Q |
| |
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|| ||||||| |
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| T |
13648228 |
gtttgtggtg |
13648237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 320
Target Start/End: Complemental strand, 20156911 - 20156862
Alignment:
| Q |
271 |
ttgtcacatgaggcaattggtgcttttttgacacatagtggatggaattc |
320 |
Q |
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||||||||| | ||||| ||||| |||||||||||| ||||||||||||| |
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| T |
20156911 |
ttgtcacataaagcaataggtgcatttttgacacattgtggatggaattc |
20156862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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