View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1369_high_43 (Length: 349)
Name: NF1369_high_43
Description: NF1369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1369_high_43 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 30 - 270
Target Start/End: Complemental strand, 142717 - 142477
Alignment:
| Q |
30 |
ttaaacatgaaatcattttcctgttcagattctttagcttttctcnnnnnnngttccattatgaaaactgagtctaacaaaatcatttccaaaaacttct |
129 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
142717 |
ttaaacatgaaatcattttcctgttcagattctttaacttttctcaaaaaaagttccattatgaaaactgagtctaacaaaatcatttccaaaaacttct |
142618 |
T |
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| Q |
130 |
catccttacaaagttcttgtttggaataacaattacaaatattttctcggttttcttcaagaaaagctttatattgtaccaaagctaaagtttgtttatt |
229 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
142617 |
catccgtacaaagttcttgtttggaataacaattacaaatattttttcggttttcttcaagaaaagctttatattgtaccaaagctaaagtttgtttatt |
142518 |
T |
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| Q |
230 |
agataaacgtttccaaaatgcatgaaaatacctttgtttct |
270 |
Q |
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| T |
142517 |
agataaacgtttccaaaatgcatgaaaatacctttgtttct |
142477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 165; Significance: 3e-88; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 31 - 268
Target Start/End: Original strand, 45960956 - 45961193
Alignment:
| Q |
31 |
taaacatgaaatcattttcctgttcagattctttagcttttctcnnnnnnngttccattatgaaaactgagtctaacaaaatcatttccaaaaacttctc |
130 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45960956 |
taaacatgaaatcatttttctgttcagattctttagcttttctcaaaaacaactccattatgaaaactgagtctaacaaaatcatttccaaaaacttctc |
45961055 |
T |
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| Q |
131 |
atccttacaaagttcttgtttggaataacaattacaaatattttctcggttttcttcaagaaaagctttatattgtaccaaagctaaagtttgtttatta |
230 |
Q |
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| T |
45961056 |
atccttgcgaagttcttgtttggaataacaattaccaatattttctctattttcttcaagaaaagctttatattctaccaaagctaaagtttgtttattt |
45961155 |
T |
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| Q |
231 |
gataaacgtttccaaaatgcatgaaaatacctttgttt |
268 |
Q |
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| T |
45961156 |
gacaaacgtttccaaaatgcatgaaagtagctttgttt |
45961193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 134; Significance: 1e-69; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 31 - 228
Target Start/End: Complemental strand, 297922 - 297724
Alignment:
| Q |
31 |
taaacatgaaatcattttcctgttcagattctttagcttttctcnnnnnnngt-tccattatgaaaactgagtctaacaaaatcatttccaaaaacttct |
129 |
Q |
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||||||||||||||| || ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
297922 |
taaacatgaaatcatctttctgttcagattctttagcttttctcaaaaaacaactccattatgaaaactgagtctaacaaaatcatttccaaaagcttct |
297823 |
T |
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| Q |
130 |
catccttacaaagttcttgtttggaataacaattacaaatattttctcggttttcttcaagaaaagctttatattgtaccaaagctaaagtttgtttat |
228 |
Q |
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||||||| ||||||||||||||||||||| |||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
297822 |
catccttgcaaagttcttgtttggaataaaaattaccaatattttctctgttttcttcaagaaaagctttatattgtaccaaagctaaagtttgtttat |
297724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 84 - 268
Target Start/End: Original strand, 27123741 - 27123919
Alignment:
| Q |
84 |
tccattatgaaaactgagtctaacaaaatcatttccaaaaacttctcatccttacaaagttcttgtttggaataacaattacaaatattttctcggtttt |
183 |
Q |
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||||| ||||||||||||||||||||||| ||||| ||||| || || | |||| |||| | ||||||||||| |||| |||||||| | ||||| |
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| T |
27123741 |
tccatgatgaaaactgagtctaacaaaatatattccacaaactgatccaccatccaaacttctggcttggaataacagttacttatattttcactgtttt |
27123840 |
T |
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| Q |
184 |
cttcaagaaaagctttatattgtaccaaagctaaagtttgtttattagataaacgtttccaaaatgcatgaaaatacctttgttt |
268 |
Q |
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|||||| |||||||||||| || ||||||| |||||||| ||||||| ||||||||||| |||||| ||| ||||||| |
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| T |
27123841 |
attcaaggaaagctttatatcgtcccaaagc------ctgtttatttgataaacatttccaaaatgaatgaaagtacttttgttt |
27123919 |
T |
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