View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1369_high_53 (Length: 315)
Name: NF1369_high_53
Description: NF1369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1369_high_53 |
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Alignment Details
Target: chr5 (Bit Score: 274; Significance: 1e-153; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 286
Target Start/End: Complemental strand, 2149833 - 2149548
Alignment:
| Q |
1 |
atgtttggctcaagatgaatgctacttgccctttatgtagaaatttgccagagtgatgcatgtgctttggttaacctctttgtgcatctttctacaattt |
100 |
Q |
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| T |
2149833 |
atgtttggctcaagatgaatgctacttgccctttatgtagaaatttgcctgagtgatgcatgtgctttggttaacctctttgtgcatctttctacaattt |
2149734 |
T |
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| Q |
101 |
tatatcaatcttcattatattgttcatatacctctctcatctcattagtcattttcttaccttcattcgattttgttttatgttaattcaatgtatcaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
2149733 |
tatatcaatcttcattatattgttcatatacctctctcatctcattagtcattttcttaccttcattcgattttattttatgttaattcaatgtatcaaa |
2149634 |
T |
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| Q |
201 |
ttgtataaaatgagactaaacatcaaacacgaacaactctatacgaacattttttccccataggttatctcttttggagctagttt |
286 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
2149633 |
ttgtataaaatgagactaaacatcaaacacgaacaactctatacgaaccttttttccccataggttatctcttttggagctagttt |
2149548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 2145358 - 2145147
Alignment:
| Q |
1 |
atgtttggctcaagatgaatgctacttgccctttatgtagaaatttgccagagtgatgcatgtgctttggttaacctctttgtgcatctttctacaattt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | ||||||||||||| |||||||||| |
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| T |
2145358 |
atgtttggctcaagatgaatgctacttgccctttatgtagaaatttgcctgagtgatgcatgtgctttggttatc-tctttgtgcatctctctacaattt |
2145260 |
T |
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| Q |
101 |
tatatcaatcttcattatattgttcatatacctctctcatctcattagtcattttcttaccttcattcgattttgttttatgttaattcaatgtatcaaa |
200 |
Q |
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||||||||||||||||||| |||| | |||| ||| ||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |
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| T |
2145259 |
tatatcaatcttcattataatgttaacatacttcttccatctcattagtcattttcttaccttcattcgattttatgttatgttaattcaatgtatcaaa |
2145160 |
T |
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| Q |
201 |
ttgtataaaatga |
213 |
Q |
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||||||||||||| |
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| T |
2145159 |
ttgtataaaatga |
2145147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 2140824 - 2140701
Alignment:
| Q |
1 |
atgtttggctcaagatgaatgctacttgccctttatgtagaaatttgccagagtgatgcatgtgctttggttaacctctttgtgcatctttctacaattt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| ||||||||||| | |||||||||| ||||||||||| || |
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| T |
2140824 |
atgtttggctcaagatgaatgctacttgccctttatgtaaaaatttgcctgagtgatgcacgtgctttggtt-atctctttgtgcctctttctacaa-tt |
2140727 |
T |
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| Q |
101 |
tatatcaatcttcattatattgttca |
126 |
Q |
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||||||||||||||| ||| |||||| |
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| T |
2140726 |
tatatcaatcttcatcataatgttca |
2140701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 213 - 285
Target Start/End: Complemental strand, 2144420 - 2144348
Alignment:
| Q |
213 |
agactaaacatcaaacacgaacaactctatacgaacattttttccccataggttatctcttttggagctagtt |
285 |
Q |
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||||||||||||||| |||||||||| ||||| ||| |||| ||| |||||| ||||||||||||||||||| |
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| T |
2144420 |
agactaaacatcaaatacgaacaactatatacaaactttttctccatataggtcatctcttttggagctagtt |
2144348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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