View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1369_high_61 (Length: 276)

Name: NF1369_high_61
Description: NF1369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1369_high_61
NF1369_high_61
[»] chr8 (4 HSPs)
chr8 (23-177)||(15151308-15151462)
chr8 (25-165)||(19442403-19442543)
chr8 (25-165)||(19578554-19578694)
chr8 (96-169)||(16822006-16822079)
[»] chr2 (7 HSPs)
chr2 (25-171)||(1644616-1644762)
chr2 (25-177)||(17673362-17673514)
chr2 (25-171)||(17628291-17628437)
chr2 (25-177)||(19569582-19569734)
chr2 (25-177)||(37081275-37081427)
chr2 (29-159)||(3563566-3563696)
chr2 (25-118)||(24578685-24578778)
[»] chr4 (3 HSPs)
chr4 (28-168)||(17405099-17405239)
chr4 (25-177)||(2946660-2946812)
chr4 (58-177)||(6136102-6136221)
[»] chr1 (4 HSPs)
chr1 (25-177)||(2900411-2900560)
chr1 (33-177)||(28538506-28538650)
chr1 (25-177)||(27908301-27908453)
chr1 (96-177)||(23971060-23971141)
[»] chr3 (2 HSPs)
chr3 (43-165)||(9021746-9021868)
chr3 (102-154)||(25226627-25226679)
[»] chr5 (4 HSPs)
chr5 (25-170)||(21714326-21714471)
chr5 (25-170)||(13502392-13502537)
chr5 (74-177)||(15023568-15023671)
chr5 (25-170)||(21788240-21788386)
[»] chr7 (2 HSPs)
chr7 (87-177)||(4633993-4634083)
chr7 (96-169)||(32238918-32238991)
[»] chr6 (2 HSPs)
chr6 (88-177)||(27991531-27991620)
chr6 (112-176)||(13627831-13627895)
[»] scaffold0010 (1 HSPs)
scaffold0010 (102-154)||(235750-235802)


Alignment Details
Target: chr8 (Bit Score: 119; Significance: 7e-61; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 23 - 177
Target Start/End: Complemental strand, 15151462 - 15151308
Alignment:
Q  23 atatgttgtctttagttaattaaatttgtcgagtgaagcatagacactggaacatggatcctggcttagagccaattcgttcacattttaaagatttata 122  Q
    |||||||||||||||||||||||| |||||||||||||||||||  |||||| ||||||||| ||||||||||||||||||||||| | || ||||||||    
T  15151462 atatgttgtctttagttaattaaacttgtcgagtgaagcatagattctggaatatggatcctagcttagagccaattcgttcacatatcaatgatttata 15151363  T
Q  123 cttgtgttcttcttgcataatgtcaaatgaaatgtttaatagtctttccgttcat 177  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  15151362 cttgtgttcttcttgcataatgtcaaatgaaatgtttaatagtcttttcgttcat 15151308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 25 - 165
Target Start/End: Complemental strand, 19442543 - 19442403
Alignment:
Q  25 atgttgtctttagttaattaaatttgtcgagtgaagcatagacactggaacatggatcctggcttagagccaattcgttcacattttaaagatttatact 124  Q
    |||||||||||||||||||||| |||||||||||||   |||| ||||||||||||| ||  |||||||| | ||  ||||||||| ||||||| |||||    
T  19442543 atgttgtctttagttaattaaacttgtcgagtgaagtccagactctggaacatggattctaacttagagctatttgtttcacatttcaaagattcatact 19442444  T
Q  125 tgtgttcttcttgcataatgtcaaatgaaatgtttaatagt 165  Q
    ||||||| | | ||| ||| |||||||||||||||||||||    
T  19442443 tgtgttcatatcgcacaatatcaaatgaaatgtttaatagt 19442403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 25 - 165
Target Start/End: Complemental strand, 19578694 - 19578554
Alignment:
Q  25 atgttgtctttagttaattaaatttgtcgagtgaagcatagacactggaacatggatcctggcttagagccaattcgttcacattttaaagatttatact 124  Q
    |||||||||||||||||||||| |||||||||||||   |||| ||||||||||||| ||  |||||||| | ||  ||||||||| ||||||| |||||    
T  19578694 atgttgtctttagttaattaaacttgtcgagtgaagtccagactctggaacatggattctaacttagagctatttgtttcacatttcaaagattcatact 19578595  T
Q  125 tgtgttcttcttgcataatgtcaaatgaaatgtttaatagt 165  Q
    ||||||| | | ||| ||| |||||||||||||||||||||    
T  19578594 tgtgttcatatcgcacaatatcaaatgaaatgtttaatagt 19578554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 96 - 169
Target Start/End: Complemental strand, 16822079 - 16822006
Alignment:
Q  96 aattcgttcacattttaaagatttatacttgtgttcttcttgcataatgtcaaatgaaatgtttaatagtcttt 169  Q
    |||| ||||||| || || |||| ||||||||||| |||||| | |||||||||||||||||||||||||||||    
T  16822079 aattggttcacacttcaatgattcatacttgtgtttttcttgtacaatgtcaaatgaaatgtttaatagtcttt 16822006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 87; Significance: 9e-42; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 25 - 171
Target Start/End: Complemental strand, 1644762 - 1644616
Alignment:
Q  25 atgttgtctttagttaattaaatttgtcgagtgaagcatagacactggaacatggatcctggcttagagccaattcgttcacattttaaagatttatact 124  Q
    |||||||||||||||||||||| |||||||| ||||  ||||| ||| |||||||||||| ||||||||| |||| |||||||||| ||||||| ||||     
T  1644762 atgttgtctttagttaattaaacttgtcgagcgaagtctagactctgaaacatggatcctagcttagagctaatttgttcacatttcaaagattcatacc 1644663  T
Q  125 tgtgttcttcttgcataatgtcaaatgaaatgtttaatagtctttcc 171  Q
    | || |||||||||| |||||||||||||||||||||||||||||||    
T  1644662 tatgctcttcttgcacaatgtcaaatgaaatgtttaatagtctttcc 1644616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 25 - 177
Target Start/End: Original strand, 17673362 - 17673514
Alignment:
Q  25 atgttgtctttagttaattaaatttgtcgagtgaagcatagacactggaacatggatcctggcttagagccaattcgttcacattttaaagatttatact 124  Q
    |||||| ||||||||||||||| ||||| | | |||||||||| || ||||||||||||| ||||||||| |||| |||||||||| ||||||| || ||    
T  17673362 atgttgcctttagttaattaaacttgtccaataaagcatagactcttgaacatggatcctagcttagagctaattggttcacatttcaaagattcatgct 17673461  T
Q  125 tgtgttcttcttgcataatgtcaaatgaaatgtttaatagtctttccgttcat 177  Q
    ||||||||||||||| || |||||||||||||||| ||||||||||| |||||    
T  17673462 tgtgttcttcttgcacaacgtcaaatgaaatgtttcatagtctttccattcat 17673514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 25 - 171
Target Start/End: Original strand, 17628291 - 17628437
Alignment:
Q  25 atgttgtctttagttaattaaatttgtcgagtgaagcatagacactggaacatggatcctggcttagagccaattcgttcacattttaaagatttatact 124  Q
    |||||| ||||||||||||||| ||||| | | |||||||||| || ||||||||||||| ||||||||| ||||  ||||||||| ||||||| || ||    
T  17628291 atgttgcctttagttaattaaacttgtccaataaagcatagactcttgaacatggatcctagcttagagctaattgattcacatttcaaagattcatgct 17628390  T
Q  125 tgtgttcttcttgcataatgtcaaatgaaatgtttaatagtctttcc 171  Q
    ||||||||||||||| || |||||||||||||||| |||||||||||    
T  17628391 tgtgttcttcttgcacaacgtcaaatgaaatgtttcatagtctttcc 17628437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 25 - 177
Target Start/End: Complemental strand, 19569734 - 19569582
Alignment:
Q  25 atgttgtctttagttaattaaatttgtcgagtgaagcatagacactggaacatggatcctggcttagagccaattcgttcacattttaaagatttatact 124  Q
    |||||||||||||||||||||| | |||||||||| | |||||  | ||||||||||||| |||||||||  ||  ||||||| || ||| ||| ||| |    
T  19569734 atgttgtctttagttaattaaactagtcgagtgaaacctagactttcgaacatggatcctagcttagagctcatcggttcacaattcaaaaattcatatt 19569635  T
Q  125 tgtgttcttcttgcataatgtcaaatgaaatgtttaatagtctttccgttcat 177  Q
    |||||| |||||||| ||||||||||||||||||||||||||||||| |||||    
T  19569634 tgtgtttttcttgcacaatgtcaaatgaaatgtttaatagtctttccattcat 19569582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 25 - 177
Target Start/End: Original strand, 37081275 - 37081427
Alignment:
Q  25 atgttgtctttagttaattaaatttgtcgagtgaagcatagacactggaacatggatcctggcttagagccaattcgttcacattttaaagatttatact 124  Q
    |||||||||||||||| ||||| |||| ||||||||| ||||| | ||| ||||||  ||  |||||||| |||  |||||||||| ||||||| |||||    
T  37081275 atgttgtctttagttagttaaacttgttgagtgaagcctagactccggatcatggactctaacttagagctaatcggttcacatttcaaagattcatact 37081374  T
Q  125 tgtgttcttcttgcataatgtcaaatgaaatgtttaatagtctttccgttcat 177  Q
    ||||||||||||||| ||| | |||| |||||||| |||||||||||||||||    
T  37081375 tgtgttcttcttgcacaatataaaataaaatgtttgatagtctttccgttcat 37081427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 29 - 159
Target Start/End: Complemental strand, 3563696 - 3563566
Alignment:
Q  29 tgtctttagttaattaaatttgtcgagtgaagcatagacactggaacatggatcctggcttagagccaattcgttcacattttaaagatttatacttgtg 128  Q
    |||||||||||||||||| |||||||||||||  ||||  || ||||||||||||| ||||||||| |||| ||| | |||| ||||||| |||||||||    
T  3563696 tgtctttagttaattaaacttgtcgagtgaagtctagagtcttgaacatggatcctagcttagagctaattggtttatatttcaaagattcatacttgtg 3563597  T
Q  129 ttcttcttgcataatgtcaaatgaaatgttt 159  Q
     |||||||| | |||||| ||||||||||||    
T  3563596 ctcttcttgtaaaatgtcgaatgaaatgttt 3563566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 25 - 118
Target Start/End: Complemental strand, 24578778 - 24578685
Alignment:
Q  25 atgttgtctttagttaattaaatttgtcgagtgaagcatagacactggaacatggatcctggcttagagccaattcgttcacattttaaagatt 118  Q
    ||||||||||||||||||||||||||||||||||| | ||||| ||||||||||||| || ||||||||| ||||  ||||||||| |||||||    
T  24578778 atgttgtctttagttaattaaatttgtcgagtgaaacctagactctggaacatggattctagcttagagctaattatttcacatttcaaagatt 24578685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 85; Significance: 1e-40; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 28 - 168
Target Start/End: Original strand, 17405099 - 17405239
Alignment:
Q  28 ttgtctttagttaattaaatttgtcgagtgaagcatagacactggaacatggatcctggcttagagccaattcgttcacattttaaagatttatacttgt 127  Q
    ||||||||||||||||||| |||||||||||||| ||||   |||||||||||||||  |||||||| |||| ||||||| || ||| ||| ||||||||    
T  17405099 ttgtctttagttaattaaacttgtcgagtgaagcctagattttggaacatggatcctaccttagagctaattggttcacacttaaaaaattcatacttgt 17405198  T
Q  128 gttcttcttgcataatgtcaaatgaaatgtttaatagtctt 168  Q
    |||||||||||| ||||||||||||||||||||||||||||    
T  17405199 gttcttcttgcacaatgtcaaatgaaatgtttaatagtctt 17405239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 25 - 177
Target Start/End: Complemental strand, 2946812 - 2946660
Alignment:
Q  25 atgttgtctttagttaattaaatttgtcgagtgaagcatagacactggaacatggatcctggcttagagccaattcgttcacattttaaagatttatact 124  Q
    ||||||| |||||||||||||| |||||||||||||| ||||| || |||||| |||| | | ||||||| |||| | || ||||| ||||||| ||||     
T  2946812 atgttgtttttagttaattaaaattgtcgagtgaagcctagactctagaacatagatcatagtttagagctaattggctcgcatttcaaagattcataca 2946713  T
Q  125 tgtgttcttcttgcataatgtcaaatgaaatgtttaatagtctttccgttcat 177  Q
    ||||||||||||||| |||||||||||||||||| |||||||||||| |||||    
T  2946712 tgtgttcttcttgcacaatgtcaaatgaaatgttaaatagtctttccattcat 2946660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 58 - 177
Target Start/End: Complemental strand, 6136221 - 6136102
Alignment:
Q  58 aagcatagacactggaacatggatcctggcttagagccaattcgttcacattttaaagatttatacttgtgttcttcttgcataatgtcaaatgaaatgt 157  Q
    |||| ||||| |||| ||||||||||| ||||||||| ||||  ||||||||| ||||||| |||| ||||||||||||||| ||| |||||||||||||    
T  6136221 aagcctagactctggcacatggatcctagcttagagctaattgattcacatttcaaagattcatacatgtgttcttcttgcacaatatcaaatgaaatgt 6136122  T
Q  158 ttaatagtctttccgttcat 177  Q
    |||||||||||||| |||||    
T  6136121 ttaatagtctttccattcat 6136102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 83; Significance: 2e-39; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 25 - 177
Target Start/End: Complemental strand, 2900560 - 2900411
Alignment:
Q  25 atgttgtctttagttaattaaatttgtcgagtgaagcatagacactggaacatggatcctggcttagagccaattcgttcacattttaaagatttatact 124  Q
    |||||||||||||||||||||| |||||||||||||  |||||  || |||||||||||| ||||||||| |||| |||  ||||| |||||||||||||    
T  2900560 atgttgtctttagttaattaaacttgtcgagtgaagtctagactttgtaacatggatcctagcttagagctaattggttgtcatttcaaagatttatact 2900461  T
Q  125 tgtgttcttcttgcataatgtcaaatgaaatgtttaatagtctttccgttcat 177  Q
    |||||   ||||||| ||||||||||||||||||||||||||||||| |||||    
T  2900460 tgtgt---tcttgcacaatgtcaaatgaaatgtttaatagtctttccattcat 2900411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 33 - 177
Target Start/End: Complemental strand, 28538650 - 28538506
Alignment:
Q  33 tttagttaattaaatttgtcgagtgaagcatagacactggaacatggatcctggcttagagccaattcgttcacattttaaagatttatacttgtgttct 132  Q
    |||||||||||||| ||||| |||||||| ||||| |  ||||||||||||| ||||||||  |||| |||||||||| ||||||| |||||||||||||    
T  28538650 tttagttaattaaacttgtcaagtgaagcctagactcctgaacatggatcctagcttagagttaattggttcacatttcaaagattcatacttgtgttct 28538551  T
Q  133 tcttgcataatgtcaaatgaaatgtttaatagtctttccgttcat 177  Q
    ||| ||| ||||||||||||||||||| ||| ||||||| |||||    
T  28538550 tctagcacaatgtcaaatgaaatgtttcataatctttccattcat 28538506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 25 - 177
Target Start/End: Complemental strand, 27908453 - 27908301
Alignment:
Q  25 atgttgtctttagttaattaaatttgtcgagtgaagcatagacactggaacatggatcctggcttagagccaattcgttcacattttaaagatttatact 124  Q
    |||||||||||||||||||||| |||| ||||||||  ||||   ||||||||||||||| ||||||||| |||| |||||||||| ||| ||| |||||    
T  27908453 atgttgtctttagttaattaaacttgtagagtgaagtctagattttggaacatggatcctagcttagagctaattggttcacatttcaaatattcatact 27908354  T
Q  125 tgtgttcttcttgcataatgtcaaatgaaatgtttaatagtctttccgttcat 177  Q
    ||||||||| ||||| ||||| ||||||||| |||| || ||||||| |||||    
T  27908353 tgtgttcttgttgcacaatgtgaaatgaaatatttattaatctttccattcat 27908301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 96 - 177
Target Start/End: Original strand, 23971060 - 23971141
Alignment:
Q  96 aattcgttcacattttaaagatttatacttgtgttcttcttgcataatgtcaaatgaaatgtttaatagtctttccgttcat 177  Q
    |||| ||||||| || ||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||| ||||||    
T  23971060 aattggttcacacttcaaagattcatacttgtgtttttcttgcacaatgtcaaatgaaatgtttaatagtctttcagttcat 23971141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 43 - 165
Target Start/End: Original strand, 9021746 - 9021868
Alignment:
Q  43 taaatttgtcgagtgaagcatagacactggaacatggatcctggcttagagccaattcgttcacattttaaagatttatacttgtgttcttcttgcataa 142  Q
    |||| |||||||||||||| ||||| |||||||||||||  | ||||||||| |||| ||| |||||| ||||||| |||||||||||||||||||| ||    
T  9021746 taaacttgtcgagtgaagcctagactctggaacatggattatagcttagagctaattggtttacatttcaaagattcatacttgtgttcttcttgcacaa 9021845  T
Q  143 tgtcaaatgaaatgtttaatagt 165  Q
    |||||||||||||||||||||||    
T  9021846 tgtcaaatgaaatgtttaatagt 9021868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 154
Target Start/End: Complemental strand, 25226679 - 25226627
Alignment:
Q  102 ttcacattttaaagatttatacttgtgttcttcttgcataatgtcaaatgaaa 154  Q
    ||||||||| ||||||| ||||| |||||||| ||||| ||||||||||||||    
T  25226679 ttcacatttcaaagattcatactcgtgttctttttgcacaatgtcaaatgaaa 25226627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 8e-27; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 25 - 170
Target Start/End: Complemental strand, 21714471 - 21714326
Alignment:
Q  25 atgttgtctttagttaattaaatttgtcgagtgaagcatagacactggaacatggatcctggcttagagccaattcgttcacattttaaagatttatact 124  Q
    ||||||||||| |||||||||| |||| ||||||||| |||||  |||||||   |||||  ||||| || |||| |||||||||| ||| ||| |||||    
T  21714471 atgttgtctttcgttaattaaacttgtagagtgaagcctagactttggaacacatatcctaacttagggctaattggttcacatttcaaatattcatact 21714372  T
Q  125 tgtgttcttcttgcataatgtcaaatgaaatgtttaatagtctttc 170  Q
    |||||||||| |||| ||| ||||||||||| ||||||||||||||    
T  21714371 tgtgttcttcatgcacaatatcaaatgaaatatttaatagtctttc 21714326  T

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Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 25 - 170
Target Start/End: Original strand, 13502392 - 13502537
Alignment:
Q  25 atgttgtctttagttaattaaatttgtcgagtgaagcatagacactggaacatggatcctggcttagagccaattcgttcacattttaaagatttatact 124  Q
    |||||||||||||||||||||| |||| ||||||||| |||||  |||||||   ||||| |||||| || ||||  ||||||||| ||| ||| |||||    
T  13502392 atgttgtctttagttaattaaacttgtagagtgaagcctagactttggaacacatatcctagcttagggctaattgattcacatttcaaatattcatact 13502491  T
Q  125 tgtgttcttcttgcataatgtcaaatgaaatgtttaatagtctttc 170  Q
    ||||||||||||||| ||| || ||| |||| |||||||| |||||    
T  13502492 tgtgttcttcttgcacaatatcgaataaaatatttaatagcctttc 13502537  T

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Target: chr5; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 74 - 177
Target Start/End: Original strand, 15023568 - 15023671
Alignment:
Q  74 acatggatcctggcttagagccaattcgttcacattttaaagatttatacttgtgttcttcttgcataatgtcaaatgaaatgtttaatagtctttccgt 173  Q
    ||||||||||| | ||||||| ||||  ||||||||| ||| ||| |||||||||||||| ||| | ||||||||||||||||||||||||||||||| |    
T  15023568 acatggatcctagtttagagctaattgattcacatttcaaaaattcatacttgtgttctttttgtacaatgtcaaatgaaatgtttaatagtctttccat 15023667  T
Q  174 tcat 177  Q
    ||||    
T  15023668 tcat 15023671  T

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Target: chr5; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 25 - 170
Target Start/End: Complemental strand, 21788386 - 21788240
Alignment:
Q  25 atgttgtctttagttaattaaatttgtcgagtgaagca-tagacactggaacatggatcctggcttagagccaattcgttcacattttaaagatttatac 123  Q
    ||||||||||| |||||||||| |||| |||||||||| |||||  |||||||   |||||  ||||| || |||| |||||||||| ||| ||| ||||    
T  21788386 atgttgtctttcgttaattaaacttgtagagtgaagcactagactttggaacacatatcctaacttagggctaattggttcacatttcaaatattcatac 21788287  T
Q  124 ttgtgttcttcttgcataatgtcaaatgaaatgtttaatagtctttc 170  Q
    ||||||||||| |||| ||| ||||||||||| ||||||||| ||||    
T  21788286 ttgtgttcttcatgcacaatatcaaatgaaatatttaatagtttttc 21788240  T

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Target: chr7 (Bit Score: 59; Significance: 5e-25; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 87 - 177
Target Start/End: Original strand, 4633993 - 4634083
Alignment:
Q  87 cttagagccaattcgttcacattttaaagatttatacttgtgttcttcttgcataatgtcaaatgaaatgtttaatagtctttccgttcat 177  Q
    |||| |||||||| |||||||||| ||||||| ||| |||| || |||||||||||||||| |||||||||||||||||||||||||||||    
T  4633993 cttatagccaattggttcacatttcaaagattcatatttgtatttttcttgcataatgtcatatgaaatgtttaatagtctttccgttcat 4634083  T

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Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 96 - 169
Target Start/End: Original strand, 32238918 - 32238991
Alignment:
Q  96 aattcgttcacattttaaagatttatacttgtgttcttcttgcataatgtcaaatgaaatgtttaatagtcttt 169  Q
    |||| ||||||| |||||||||| ||||||| ||| || ||||| ||||||||||||||| |||||||||||||    
T  32238918 aattagttcacactttaaagattcatacttgcgtttttgttgcacaatgtcaaatgaaatatttaatagtcttt 32238991  T

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Target: chr6 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 88 - 177
Target Start/End: Original strand, 27991531 - 27991620
Alignment:
Q  88 ttagagccaattcgttcacattttaaagatttatacttgtgttcttcttgcataatgtcaaatgaaatgtttaatagtctttccgttcat 177  Q
    ||||||| ||||  ||||||||| || |||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||| |||||    
T  27991531 ttagagctaattgattcacatttcaatgattcatacttgtgttctttttgcataatgtaaaatgaaatgtttaatagtctttccattcat 27991620  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 112 - 176
Target Start/End: Complemental strand, 13627895 - 13627831
Alignment:
Q  112 aaagatttatacttgtgttcttcttgcataatgtcaaatgaaatgtttaatagtctttccgttca 176  Q
    ||||||| ||| ||||||| ||||||||||||||||||| ||||||||||||||| || ||||||    
T  13627895 aaagattcatatttgtgtttttcttgcataatgtcaaataaaatgtttaatagtcatttcgttca 13627831  T

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Target: scaffold0010 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 154
Target Start/End: Original strand, 235750 - 235802
Alignment:
Q  102 ttcacattttaaagatttatacttgtgttcttcttgcataatgtcaaatgaaa 154  Q
    ||||||||| ||||||| |||||  ||||||| ||||| ||||||||||||||    
T  235750 ttcacatttcaaagattcatactcatgttctttttgcacaatgtcaaatgaaa 235802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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