View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1369_high_65 (Length: 253)
Name: NF1369_high_65
Description: NF1369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1369_high_65 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 253
Target Start/End: Original strand, 11517008 - 11517260
Alignment:
| Q |
1 |
catataatatttcctctattccatggcaagtaatgatcagcatgtacatcagagaaaagggcttaaagcatgtggtggttttctgacgtgcttttctgcc |
100 |
Q |
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| T |
11517008 |
catataatatttcttctattccatggcaagtaatgatcaacatgtacatcagagaaaagggcttaaagcatgtggtggttttctgacgtgcttttctgcc |
11517107 |
T |
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| Q |
101 |
aatgcccgaaatgaacagcagcaatccgtacatgatcatgtcgacaacaacaccgaggatatcataaggggaagaagagtggcttccacgacagcagtcg |
200 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
11517108 |
aatgccagaaatgaacagcagcaatccgtacatgatcatgtcgacaacaacactgaggatatcataagaggaagaagagtggcttccacgacagcagtcg |
11517207 |
T |
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| Q |
201 |
atgaaaagcatctcgctaaaatcgcagatgcattcaaagagctagcaaatgcc |
253 |
Q |
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| T |
11517208 |
atgaaaagcatctcgctaaaatcgcagatgcattcaaagagctagcaaatgcc |
11517260 |
T |
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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 153
Target Start/End: Complemental strand, 39748009 - 39747969
Alignment:
| Q |
113 |
gaacagcagcaatccgtacatgatcatgtcgacaacaacac |
153 |
Q |
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| T |
39748009 |
gaacagcagcaatatgtacatgatcatgttgacaacaacac |
39747969 |
T |
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