View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1369_high_66 (Length: 252)
Name: NF1369_high_66
Description: NF1369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1369_high_66 |
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Alignment Details
Target: chr1 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 46380547 - 46380300
Alignment:
| Q |
1 |
aattatatctctcctgaagcattttatggaattcagtcactgacgtctgacagcacagttcctttcaaatgaaagcccgataaaataatcaaatcagact |
100 |
Q |
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| T |
46380547 |
aattatatctctcctgaagcattttatggaattcagtcactgacgtctgacagcacagttcctttcaaatgaaagcccgataaaataatcaaatcagact |
46380448 |
T |
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| Q |
101 |
gagttattaattagcaacaatctgttgtagactggaattgataaatgagtaaaataatgaagatattggttataccttattctgaataacatctttgaga |
200 |
Q |
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| T |
46380447 |
gagttattaattagcaacaatctgttgtagactgcaattgataaatgagtaaaataatgaagatattggttataccttattctgaataacatctttgaga |
46380348 |
T |
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| Q |
201 |
atagtagtaatccttgacaacgtctcaatctttttcttcatctcactc |
248 |
Q |
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| T |
46380347 |
atagtagtaatccttgacaacgtctcaatctttttctccatttcactc |
46380300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 173 - 248
Target Start/End: Complemental strand, 25755135 - 25755060
Alignment:
| Q |
173 |
taccttattctgaataacatctttgagaatagtagtaatccttgacaacgtctcaatctttttcttcatctcactc |
248 |
Q |
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||||||||| |||||||||||||| ||||||||||||||||| ||| |||||||||||||||| ||| |||||| |
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| T |
25755135 |
taccttattatgaataacatctttaagaatagtagtaatcctatccaaagtctcaatctttttctccatttcactc |
25755060 |
T |
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