View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1369_high_8 (Length: 590)

Name: NF1369_high_8
Description: NF1369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1369_high_8
NF1369_high_8
[»] chr2 (4 HSPs)
chr2 (365-573)||(37988586-37988796)
chr2 (185-366)||(37988002-37988186)
chr2 (107-186)||(37987660-37987738)
chr2 (26-67)||(28105032-28105073)
[»] scaffold0227 (1 HSPs)
scaffold0227 (7-110)||(1714-1817)
[»] chr3 (1 HSPs)
chr3 (405-509)||(48949150-48949254)
[»] chr1 (2 HSPs)
chr1 (15-76)||(31297516-31297577)
chr1 (397-527)||(28024308-28024438)
[»] chr8 (1 HSPs)
chr8 (422-527)||(15247940-15248045)
[»] chr4 (1 HSPs)
chr4 (20-76)||(39624163-39624219)
[»] chr5 (1 HSPs)
chr5 (397-520)||(503673-503796)
[»] chr7 (1 HSPs)
chr7 (19-76)||(22803218-22803275)


Alignment Details
Target: chr2 (Bit Score: 175; Significance: 6e-94; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 175; E-Value: 6e-94
Query Start/End: Original strand, 365 - 573
Target Start/End: Original strand, 37988586 - 37988796
Alignment:
Q  365 taataacacgagttcaactttaagttgttctatttgtttctgcggtgcattaaacatagacgcacgttttggccaaaactacta-tcttgagcttcacca 463  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| |||||| ||||| |||||| |||||||||||||||    
T  37988586 taataacacgagttcaactttaagttgttctatttgtttatgcggtgcattaaacgtagacgcatgttttgaccaaagctactaatcttgagcttcacca 37988685  T
Q  464 aaatcacggtagttgaacattgaaaagtgatatttgtgcttccaccaccaaaccaaatagccacaaagtaaaattcttgttgattgatag-ttgaaaata 562  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  37988686 aaatcacggtagttgaacattgaaaagtgatatttgtgcttccaccaccaaaccaaatagccacaaagtaaaattcttgttgattgatagtttgaaaata 37988785  T
Q  563 tatatgacatc 573  Q
    |||||||||||    
T  37988786 tatatgacatc 37988796  T

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Target: chr2; HSP #2
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 185 - 366
Target Start/End: Original strand, 37988002 - 37988186
Alignment:
Q  185 taatatttatgttgagaatttcaaacacatctttatccaaaatagcacttaatga---ttcatgaggtgatttgaaagtaatgtcgacagacaataattg 281  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||   ||||||||||||||||||||||||||||||||||||||||||    
T  37988002 taatatttatgttgagaatttcaaacacatctttatccaaaatagcaattaatgatgattcatgaggtgatttgaaagtaatgtcgacagacaataattg 37988101  T
Q  282 gaaaacactcaaaccagtacagtactagcggtaatactatataataattgttgtcatttgataaagagttgattcatatttaata 366  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||  |||||||||||||    
T  37988102 gaaaacactcaaaccagtacagtactagcggtaatagtatataataattgttgtcatttgataaagagttcgttcatatttaata 37988186  T

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Target: chr2; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 107 - 186
Target Start/End: Original strand, 37987660 - 37987738
Alignment:
Q  107 catggggaatacgtagttgtgtattgtaaagtaaaagagatagtgagattgaggtgcgtagactagttgcttgatattta 186  Q
    ||||||||||| |||||||| ||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||    
T  37987660 catggggaatatgtagttgtctattgtaaagtaaaagagatagtgaga-tcaggtgcgtagactagttgcttgatattta 37987738  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 67
Target Start/End: Original strand, 28105032 - 28105073
Alignment:
Q  26 caagtgtagggattctaatgatttggaatagaacccgataca 67  Q
    ||||||||||||||||||| |||| |||||||| ||||||||    
T  28105032 caagtgtagggattctaataatttagaatagaatccgataca 28105073  T

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Target: scaffold0227 (Bit Score: 88; Significance: 5e-42; HSPs: 1)
Name: scaffold0227
Description:

Target: scaffold0227; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 7 - 110
Target Start/End: Complemental strand, 1817 - 1714
Alignment:
Q  7 gaactgataatccaagtcccaagtgtagggattctaatgatttggaatagaacccgatacataggagaaagtttgtaaggatttggaatagaacctgttt 106  Q
    |||| ||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||    
T  1817 gaaccgataatccaagtctcaagtgtagggattctaatgatttggaatagaatccgatacaaaggagaaagtttgtaaggatttggaatagaacctgttt 1718  T
Q  107 catg 110  Q
    ||||    
T  1717 catg 1714  T

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Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 405 - 509
Target Start/End: Original strand, 48949150 - 48949254
Alignment:
Q  405 tgcggtgcattaaacatagacgcacgttttggccaaaactactatcttgagcttcaccaaaatcacggtagttgaacattgaaaagtgatatttgtgctt 504  Q
    ||||||||| ||| |||||||||||||| || ||||| | ||||| |||||||||   ||||||||||||||||| |||||  | ||||||||| |||||    
T  48949150 tgcggtgcactaagcatagacgcacgttctgcccaaagccactattttgagcttcttaaaaatcacggtagttgagcattgggatgtgatatttatgctt 48949249  T
Q  505 ccacc 509  Q
    |||||    
T  48949250 ccacc 48949254  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 15 - 76
Target Start/End: Original strand, 31297516 - 31297577
Alignment:
Q  15 aatccaagtcccaagtgtagggattctaatgatttggaatagaacccgatacataggagaaa 76  Q
    |||||||||| |||||||||| ||||||||||||| |||||||| |||||| | ||||||||    
T  31297516 aatccaagtctcaagtgtaggaattctaatgatttagaatagaatccgatataaaggagaaa 31297577  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 397 - 527
Target Start/End: Original strand, 28024308 - 28024438
Alignment:
Q  397 tttgtttctgcggtgcattaaacatagacgcacgttttggccaaaactactatcttgagcttcaccaaaatcacggtagttgaacattgaaaagtgatat 496  Q
    ||||||| |||| ||||  || || ||||||||||||||   ||| | || || || |||||||  |||||||||| ||| || |||||  | | |||||    
T  28024308 tttgtttgtgcgatgcaccaagcacagacgcacgttttgcaaaaatccacaattttaagcttcataaaaatcacggcagtggagcattgggacgcgatat 28024407  T
Q  497 ttgtgcttccaccaccaaaccaaatagccac 527  Q
    ||||||| |||||||||||||||| ||||||    
T  28024408 ttgtgctcccaccaccaaaccaaacagccac 28024438  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 422 - 527
Target Start/End: Complemental strand, 15248045 - 15247940
Alignment:
Q  422 agacgcacgttttggccaaaactactatcttgagcttcaccaaaatcacggtagttgaacattgaaaagtgatatttgtgcttccaccaccaaaccaaat 521  Q
    |||||||||||||| | ||| | || || || |||||||  ||||||||||| || || |||||  |  ||||||||||||| ||||||||||||||||     
T  15248045 agacgcacgttttgcctaaagccacaattttaagcttcataaaaatcacggtggtggagcattgggacctgatatttgtgctcccaccaccaaaccaaac 15247946  T
Q  522 agccac 527  Q
    ||||||    
T  15247945 agccac 15247940  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 20 - 76
Target Start/End: Complemental strand, 39624219 - 39624163
Alignment:
Q  20 aagtcccaagtgtagggattctaatgatttggaatagaacccgatacataggagaaa 76  Q
    ||||| ||| |||||||||||||||||| | |||||||| |||||||| ||||||||    
T  39624219 aagtctcaaatgtagggattctaatgatgtagaatagaatccgatacaaaggagaaa 39624163  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 397 - 520
Target Start/End: Original strand, 503673 - 503796
Alignment:
Q  397 tttgtttctgcggtgcattaaacatagacgcacgttttggccaaaactactatcttgagcttcaccaaaatcacggtagttgaacattgaaaagtgatat 496  Q
    ||||||| |||| ||||| || ||  |||||||||||||   ||| ||||||| ||||||||||  |||||||| || ||||| |||||  | | |||||    
T  503673 tttgtttgtgcgatgcatcaagcaatgacgcacgttttgcttaaatctactattttgagcttcataaaaatcacagtggttgagcattgggacgcgatat 503772  T
Q  497 ttgtgcttccaccaccaaaccaaa 520  Q
    || || | ||||||||||||||||    
T  503773 ttttgttcccaccaccaaaccaaa 503796  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 76
Target Start/End: Complemental strand, 22803275 - 22803218
Alignment:
Q  19 caagtcccaagtgtagggattctaatgatttggaatagaacccgatacataggagaaa 76  Q
    |||||| |||||||| | ||||||||||||| ||||||||  ||||||||| ||||||    
T  22803275 caagtctcaagtgtatgaattctaatgatttagaatagaattcgatacataagagaaa 22803218  T

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