View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1369_low_10 (Length: 571)

Name: NF1369_low_10
Description: NF1369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1369_low_10
NF1369_low_10
[»] chr8 (4 HSPs)
chr8 (56-560)||(26722410-26722914)
chr8 (55-227)||(2077894-2078061)
chr8 (52-191)||(38985287-38985422)
chr8 (52-191)||(39016384-39016519)
[»] chr3 (1 HSPs)
chr3 (55-227)||(45481696-45481864)
[»] scaffold0736 (1 HSPs)
scaffold0736 (55-250)||(6541-6738)
[»] chr7 (2 HSPs)
chr7 (55-227)||(42883585-42883753)
chr7 (72-116)||(9262196-9262240)
[»] chr4 (1 HSPs)
chr4 (55-227)||(39182269-39182437)
[»] chr5 (1 HSPs)
chr5 (55-227)||(1189171-1189339)
[»] chr1 (2 HSPs)
chr1 (101-227)||(40099698-40099820)
chr1 (107-227)||(40875224-40875340)


Alignment Details
Target: chr8 (Bit Score: 469; Significance: 0; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 56 - 560
Target Start/End: Complemental strand, 26722914 - 26722410
Alignment:
Q  56 aaagagggcaaaagttcaagaagaaaactataaatctaaacgaacattccgaggcatgcaagtgccgcatctgtcatcaaagagaatattttgaagtttc 155  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |    
T  26722914 aaagagggcaaaagttcaagaagaaaactataaatctaaacgaacattccgaggcatgcaagtgccgcatctgtcttcaaagagaatattttgaagttcc 26722815  T
Q  156 atatataggaggagtctccgttacatgaaaatcaaaagcgttccaaggtaaactaaagttagctaaccaatctttattgccttcacgccaagtattaaaa 255  Q
    ||||||||||||||||||| ||||||| ||||||||||||||  ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  26722814 atatataggaggagtctccattacatggaaatcaaaagcgtttaaaggtaaactaaagttagctaaccaatctctattgccttcacgccaagtattaaaa 26722715  T
Q  256 gtgaattaagtgtgattggaatattcgaataatttatacgaatatttgtataatttctatactaaaacatatacttagcccttctaaacattatatcaaa 355  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26722714 gtgaattaagtgtgattggaatattcgaataatttatacgaatattggtataatttctatactaaaacatatacttagcccttctaaacattatatcaaa 26722615  T
Q  356 acatatcattggataaggagaatgaagctcaatattttggcataaacttaagtatttttcagcccagtgaagctcaaggattattttgttggggaaagtg 455  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26722614 acatatcattggataaggagaatgaagctcaatatttttgcataaacttaagtatttttcagcccagtgaagctcaaggattattttgttggggaaagtg 26722515  T
Q  456 ctcagcacctacaaaaatttagctccacaaagcatgcaaacaaataattttgtgaatttttgttgtcttattcactgtggttcagttagagatccttctg 555  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26722514 ctcagcacctacaaaaatttagctccacaaagcatgcaaacaaataattttgtgaatttttgttgtcttattcactgtggttcagttagagatccttctg 26722415  T
Q  556 ttcat 560  Q
    |||||    
T  26722414 ttcat 26722410  T

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Target: chr8; HSP #2
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 55 - 227
Target Start/End: Complemental strand, 2078061 - 2077894
Alignment:
Q  55 aaaagagggcaaaagttcaagaagaaaactataaatctaaacgaacattccgaggcatgcaagtgccgcatctgtcatcaaagagaatattttgaagttt 154  Q
    ||||||||| ||||| ||||||| ||||||||||| |||| ||||||||||||||||||||||  ||| || |||||||||| |||||||||||||| |     
T  2078061 aaaagagggtaaaagctcaagaataaaactataaaactaa-cgaacattccgaggcatgcaagctccggatttgtcatcaaatagaatattttgaagctc 2077963  T
Q  155 catatataggaggagtctccgttacatgaaaatcaaaagcgttccaaggtaaactaaagttagctaaccaatc 227  Q
    |     | |||||||||||| ||||||| ||||||||||||||| ||| |||||| |||||||||||||||||    
T  2077962 c----ctcggaggagtctccattacatggaaatcaaaagcgttcaaagttaaactgaagttagctaaccaatc 2077894  T

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Target: chr8; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 52 - 191
Target Start/End: Original strand, 38985287 - 38985422
Alignment:
Q  52 tataaaagagggcaaaagttcaagaagaaaactataaatctaaacgaacattccgaggcatgcaagtgccgcatctgtcatcaaagagaatattttgaag 151  Q
    ||||||| |||||||||  ||||||||||||||| |||  ||||||||||||| ||| ||| |||| | || |||||||||||||||||||||||| |||    
T  38985287 tataaaaaagggcaaaaactcaagaagaaaactacaaagttaaacgaacattctgagccatacaagcgtcgtatctgtcatcaaagagaatattttaaag 38985386  T
Q  152 tttcatatataggaggagtctccgttacatgaaaatcaaa 191  Q
     | |     |||||||||||||  ||||||||||||||||    
T  38985387 ctcc----ctaggaggagtctctattacatgaaaatcaaa 38985422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 52 - 191
Target Start/End: Original strand, 39016384 - 39016519
Alignment:
Q  52 tataaaagagggcaaaagttcaagaagaaaactataaatctaaacgaacattccgaggcatgcaagtgccgcatctgtcatcaaagagaatattttgaag 151  Q
    ||||||| |||||||||  ||||||||||||||| |||  ||||||||||||| ||| ||| |||| | || |||||||||||||||||||||||| |||    
T  39016384 tataaaaaagggcaaaaactcaagaagaaaactacaaagttaaacgaacattctgagccatacaagcgtcgtatctgtcatcaaagagaatattttaaag 39016483  T
Q  152 tttcatatataggaggagtctccgttacatgaaaatcaaa 191  Q
     | |     |||||||||||||  ||||||||||||||||    
T  39016484 ctcc----ctaggaggagtctctattacatgaaaatcaaa 39016519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 100; Significance: 3e-49; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 55 - 227
Target Start/End: Complemental strand, 45481864 - 45481696
Alignment:
Q  55 aaaagagggcaaaagttcaagaagaaaactataaatctaaacgaacattccgaggcatgcaagtgccgcatctgtcatcaaagagaatattttgaagttt 154  Q
    |||||||||||||||| |||||||||||| | ||| ||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||       
T  45481864 aaaagagggcaaaagtccaagaagaaaacaacaaaactaaacgaacattccgaggcatgcaagcgccgaatctgtcatcaaagagaatattttgaag--- 45481768  T
Q  155 catatataggaggagtctccgttacatgaaaatcaaaagcgttccaaggtaaactaaagttagctaaccaatc 227  Q
      | | | |||||||||||| ||||||| ||||||||||||||| ||| ||||||||||||||||||||||||    
T  45481767 -ctctctcggaggagtctccattacatggaaatcaaaagcgttcaaagttaaactaaagttagctaaccaatc 45481696  T

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Target: scaffold0736 (Bit Score: 90; Significance: 3e-43; HSPs: 1)
Name: scaffold0736
Description:

Target: scaffold0736; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 55 - 250
Target Start/End: Complemental strand, 6738 - 6541
Alignment:
Q  55 aaaagagggcaaaagttcaagaagaaaactataaatctaaacgaacattccgaggcatgcaagtgccgcatctgtcatcaaagagaatattttgaagttt 154  Q
    |||||||||||||||| ||| |||||||||| ||| |||||| |||| ||||||||||||||| |||| |||||||||||||||||||||||||||| |     
T  6738 aaaagagggcaaaagtccaaaaagaaaactacaaaactaaacaaacactccgaggcatgcaagcgccggatctgtcatcaaagagaatattttgaagctc 6639  T
Q  155 catatataggaggagtctccgttacatgaaaatcaaaagcgttccaaggtaaactaaagttagctaaccaat------ctttattgccttcacgccaagt 248  Q
    |     | |||||||||||| ||||||| || |||||||||||| ||| |||||||||||||||||||||||      || |||||||||||||||||||    
T  6638 c----ctcggaggagtctccattacatggaagtcaaaagcgttcaaagttaaactaaagttagctaaccaatcggctgctctattgccttcacgccaagt 6543  T

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Target: chr7 (Bit Score: 76; Significance: 7e-35; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 55 - 227
Target Start/End: Original strand, 42883585 - 42883753
Alignment:
Q  55 aaaagagggcaaaagttcaagaagaaaactataaatctaaacgaacattccgaggcatgcaagtgccgcatctgtcatcaaagagaatattttgaagttt 154  Q
    |||||||||||||  | |||||||||||||| ||||||||||||||||| ||||||| ||||| | || || ||||||||||||||||||||||||| |     
T  42883585 aaaagagggcaaacatccaagaagaaaactacaaatctaaacgaacatttcgaggcacgcaagcgtcggatttgtcatcaaagagaatattttgaagctc 42883684  T
Q  155 catatataggaggagtctccgttacatgaaaatcaaaagcgttccaaggtaaactaaagttagctaaccaatc 227  Q
    |     | |||||||||||| ||||||| ||||||||||||||| ||| |||| | |||||||||||||||||    
T  42883685 c----cttggaggagtctccattacatggaaatcaaaagcgttcaaagttaaattgaagttagctaaccaatc 42883753  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 72 - 116
Target Start/End: Complemental strand, 9262240 - 9262196
Alignment:
Q  72 caagaagaaaactataaatctaaacgaacattccgaggcatgcaa 116  Q
    |||||||||||||| ||||||||||||||||||| || |||||||    
T  9262240 caagaagaaaactacaaatctaaacgaacattccaagacatgcaa 9262196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 76; Significance: 7e-35; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 55 - 227
Target Start/End: Complemental strand, 39182437 - 39182269
Alignment:
Q  55 aaaagagggcaaaagttcaagaagaaaactataaatctaaacgaacattccgaggcatgcaagtgccgcatctgtcatcaaagagaatattttgaagttt 154  Q
    |||||||||||||||  |||||||||||||| ||||||||| |||||||||||||||| |||| | || | |||||||||||||||||||||||||| |     
T  39182437 aaaagagggcaaaagcccaagaagaaaactacaaatctaaaagaacattccgaggcattcaagcgacggacctgtcatcaaagagaatattttgaagctc 39182338  T
Q  155 catatataggaggagtctccgttacatgaaaatcaaaagcgttccaaggtaaactaaagttagctaaccaatc 227  Q
    |     | |||||||||||| ||||||| ||||||||||||| | ||| |||||| |||||| ||||||||||    
T  39182337 c----ctcggaggagtctccattacatggaaatcaaaagcgtgcaaagttaaactgaagttaactaaccaatc 39182269  T

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Target: chr5 (Bit Score: 64; Significance: 1e-27; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 55 - 227
Target Start/End: Complemental strand, 1189339 - 1189171
Alignment:
Q  55 aaaagagggcaaaagttcaagaagaaaactataaatctaaacgaacattccgaggcatgcaagtgccgcatctgtcatcaaagagaatattttgaagttt 154  Q
    |||||||| |||||  ||||||||||||||| ||||||||||||| |||| |||||||||||||| || || || |||||||||||||||||||||| |     
T  1189339 aaaagaggacaaaaactcaagaagaaaactacaaatctaaacgaatattctgaggcatgcaagtgtcgaatatgacatcaaagagaatattttgaagctc 1189240  T
Q  155 catatataggaggagtctccgttacatgaaaatcaaaagcgttccaaggtaaactaaagttagctaaccaatc 227  Q
    | |||    ||||||||||| |||||   |||| |||| ||||| ||| |||| ||||||||||||| |||||    
T  1189239 cctat----gaggagtctccattacacagaaataaaaaacgttcaaagttaaattaaagttagctaatcaatc 1189171  T

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Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 101 - 227
Target Start/End: Complemental strand, 40099820 - 40099698
Alignment:
Q  101 attccgaggcatgcaagtgccgcatctgtcatcaaagagaatattttgaagtttcatatataggaggagtctccgttacatgaaaatcaaaagcgttcca 200  Q
    ||||||||||||| |||||| | ||||||||||||||||| |||||||||| | |     | |||||||||||| ||||||| |||||||||| |||| |    
T  40099820 attccgaggcatggaagtgcaggatctgtcatcaaagagattattttgaagctcc----ctcggaggagtctccattacatggaaatcaaaagtgttcaa 40099725  T
Q  201 aggtaaactaaagttagctaaccaatc 227  Q
    || |||| | |||| | ||||||||||    
T  40099724 agttaaattgaagtcaactaaccaatc 40099698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 107 - 227
Target Start/End: Original strand, 40875224 - 40875340
Alignment:
Q  107 aggcatgcaagtgccgcatctgtcatcaaagagaatattttgaagtttcatatataggaggagtctccgttacatgaaaatcaaaagcgttccaaggtaa 206  Q
    |||||||||| ||||| || || ||||||||||||||||||||||     | | |||||| ||||||| ||||||  ||||||||| | ||| ||| | |    
T  40875224 aggcatgcaaatgccgaatatgccatcaaagagaatattttgaag----ctctctaggagaagtctccattacatagaaatcaaaaaccttcaaagttta 40875319  T
Q  207 actaaagttagctaaccaatc 227  Q
    |||||||||| ||||||||||    
T  40875320 actaaagttaactaaccaatc 40875340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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