View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1369_low_11 (Length: 564)
Name: NF1369_low_11
Description: NF1369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1369_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 434; Significance: 0; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 98 - 551
Target Start/End: Complemental strand, 47718130 - 47717677
Alignment:
| Q |
98 |
gtttgccgcagtcgtctcaatgattcaagagttcttctcacaaaactttgtccaaaccaaaaagaagcaattggttggtatgttgactgcatgttgcgtt |
197 |
Q |
| |
|
|||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
47718130 |
gtttgccgaagttgtctcaatgattcaagagttcttctcacaaaactttgtccaaaccaaaaagaagcgattggttggtatgttgactgcatgttgcgtt |
47718031 |
T |
|
| Q |
198 |
actcaaaccgatcaatattcggcgttatggaagcttcaccttcatatttaaagtggaccttgaaaaatgcaaccgaggtggatcaatttaatcaagttct |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
47718030 |
actcaaaccgatcaatattcggcgttatggaagcttcaccttcatatttaaagtggaccttgaaaaatgcaaccgaggtggatcaatttaatcaagttct |
47717931 |
T |
|
| Q |
298 |
tgggaacttgatgaggaaactcaaagaaatagcagcatcaagtgattctcgtcgtaagtttgctaccgctaatgcaactttgaattttgaaaccacatat |
397 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
47717930 |
tgggaacttgatgaggaaactcaaagaaatagcagcatcaagtgattctcgtcgtaagtttgctaccgctaatgcaactttgaattttgaaaccacatat |
47717831 |
T |
|
| Q |
398 |
ggtcttgtgcagtgtacacctgatttatcacagcaagattgcaatgattgtttagagcgtgctatttcagaaattcctatttatttacataacaaggttg |
497 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
47717830 |
ggtcttgtgcagtgtacacctgatttatcacagcaagattgcaatgattgtttagagcgtgctatttcagaaattcctatttattttaataacaaggttg |
47717731 |
T |
|
| Q |
498 |
gcggtatagttctcaaaccaagttgcaatattagacatgaaatctattccttct |
551 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47717730 |
gcggtatagttctcaaaccaagttgcaatattagacatgaaatctattccttct |
47717677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 99 - 551
Target Start/End: Complemental strand, 47745918 - 47745466
Alignment:
| Q |
99 |
tttgccgcagtcgtctcaatgattcaagagttcttctcacaaaactttgtccaaaccaaaaagaagcaattggttggtatgttgactgcatgttgcgtta |
198 |
Q |
| |
|
||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| | |||||||||||||||| |
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|
| T |
47745918 |
tttgccgcagttgtctcaacgattcaagagttcttctcacaaaactttgtccaacccaaaaagaagcaattagttggtatgataactgcatgttgcgtta |
47745819 |
T |
|
| Q |
199 |
ctcaaaccgatcaatattcggcgttatggaagcttcaccttcatatttaaagtggaccttgaaaaatgcaaccgaggtggatcaatttaatcaagttctt |
298 |
Q |
| |
|
|||||||||||||||||| ||| ||||||| ||||| |||||||| ||||||| | | ||||| |||||| |||| ||||||||||||||||||| |
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|
| T |
47745818 |
ctcaaaccgatcaatatttggcattatggatacttcattttcatattataagtggaacaatagaaatgtaaccgatgtggctcaatttaatcaagttctt |
47745719 |
T |
|
| Q |
299 |
gggaacttgatgaggaaactcaaagaaatagcagcatcaagtgattctcgtcgtaagtttgctaccgctaatgcaactttgaattttgaaaccacatatg |
398 |
Q |
| |
|
||||||||||||||||||||||| |||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
47745718 |
gggaacttgatgaggaaactcaatgaaatagctgcatcaggtgattctcgtcgtaagtttgctaccgctaatgcaactttgaattttgaaaccatatatg |
47745619 |
T |
|
| Q |
399 |
gtcttgtgcagtgtacacctgatttatcacagcaagattgcaatgattgtttagagcgtgctatttcagaaattcctatttatttacataacaaggttgg |
498 |
Q |
| |
|
|||||||||||||||||||||| || ||| |||||||||||||||||||||||||||||||||||||||| ||| | || ||| |||||||| |||| |
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|
| T |
47745618 |
gtcttgtgcagtgtacacctgacttgtcaggacaagattgcaatgattgtttagagcgtgctatttcagaaactccaagttttttttataacaagattgg |
47745519 |
T |
|
| Q |
499 |
cggtatagttctcaaaccaagttgcaatattagacatgaaatctattccttct |
551 |
Q |
| |
|
|||| ||||||||||| |||||| ||||||||| ||||||| |||||||||| |
|
|
| T |
47745518 |
tggtagagttctcaaactaagttgtaatattagatatgaaatatattccttct |
47745466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 98 - 539
Target Start/End: Complemental strand, 47760251 - 47759801
Alignment:
| Q |
98 |
gtttgccgcagtcgtctcaatgattcaagagttcttctcacaaaactttgtccaaaccaaaaagaagcaattggttggtatgttgactgcatgttgcgtt |
197 |
Q |
| |
|
|||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |
|
|
| T |
47760251 |
gtttgccgcagttgtctcaacgattcaagagttcttctcacaaaactttgtccaaaccaaaaagaagcaattggttggtatgataactgcatgttgcgtt |
47760152 |
T |
|
| Q |
198 |
actcaaaccgatcaatattcggcgttatggaagcttcaccttcatatttaaagtggaccttgaaaaatgcaaccgaggtggatcaatttaatcaagttct |
297 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||| | || | ||||| | | | |||| ||| ||||||||||||||||| |||||||| |
|
|
| T |
47760151 |
actcaaaccgatcaatattcggcgttatggaaggttcaccaaagttttatatgtggaacatatataatgtaacagaggtggatcaatttaaccaagttct |
47760052 |
T |
|
| Q |
298 |
tgggaacttgatgaggaaactcaaagaaatagcagcatcaagtgattctcgtcgtaagtttgctaccgctaatgcaac---------tttgaattttgaa |
388 |
Q |
| |
|
||||||||||||||||||||| ||||| | ||| ||||||||||||||||||||||| |||||||| | ||||||||| |||||||||| || |
|
|
| T |
47760051 |
tgggaacttgatgaggaaactgaaagagaaagctgcatcaagtgattctcgtcgtaaatttgctacagataatgcaactgatgtaaatttgaattttcaa |
47759952 |
T |
|
| Q |
389 |
accacatatggtcttgtgcagtgtacacctgatttatcacagcaagattgcaatgattgtttagagcgtgctatttcagaaattcctatttatttacata |
488 |
Q |
| |
|
|||| |||||||||||| ||||| ||||||||||| ||| |||||||||||||| |||||||||| ||||||| ||||| ||||| | || || ||| |
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|
| T |
47759951 |
accatatatggtcttgttcagtgcacacctgatttgtcagagcaagattgcaataattgtttagatggtgctatctcagatattccaagttgttgtaata |
47759852 |
T |
|
| Q |
489 |
acaaggttggcggtatagttctcaaaccaagttgcaatattagacatgaaa |
539 |
Q |
| |
|
||||| |||| |||| |||||||||||||||||| ||||| ||| |||||| |
|
|
| T |
47759851 |
acaagattggtggtagagttctcaaaccaagttgtaatatcagatatgaaa |
47759801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 96 - 559
Target Start/End: Complemental strand, 47713338 - 47712866
Alignment:
| Q |
96 |
atgtttgccgcagtcgtctcaatgattcaagagttcttctcacaaaactttgtccaaaccaaaaagaagcaattggttggtatgttgactgcatgttgcg |
195 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| |
|
|
| T |
47713338 |
atgtttgccgcagtcgtctcaatgattcaagagttcttctcacaaaactttgtccaaaccaaaaagaagcaattggttggtatgaggactacatgttgcg |
47713239 |
T |
|
| Q |
196 |
ttactcaaaccgatcaatattcggcgttatggaagcttcaccttcatatttaaagtggaccttgaaaaatgcaaccgaggtggatcaatttaatcaagtt |
295 |
Q |
| |
|
||||||||||| ||||||||| ||| || | ||| ||||| | || | || || | ||| |||| |||||||||||||| |||||||| |||| |
|
|
| T |
47713238 |
ttactcaaaccaatcaatatttggcattcttgaatggtcaccaaagttttatatgtcgaacccgaacaatgtaaccgaggtggatccatttaatcgagtt |
47713139 |
T |
|
| Q |
296 |
cttgggaacttgatgaggaaactcaaagaaatagcagcatcaagtgattctcgtcgtaagtttgctaccgctaatgcaac---------tttgaattttg |
386 |
Q |
| |
|
||||| ||||||||||||||||| | ||||||||| ||||||||||||||||||| |||||||||| | | ||||||||| |||||||||| |
|
|
| T |
47713138 |
cttggaaacttgatgaggaaactgagagaaatagctgcatcaagtgattctcgtcttaagtttgctgcggataatgcaactgatgtgaatttgaattttc |
47713039 |
T |
|
| Q |
387 |
aaaccacatatggtcttgtgcagtgtacacctgatttatcacagcaagattgcaatgattgtttagagcgtgctatttcagaaattcctatttatttaca |
486 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| |||||| ||||||||||| ||||| | | |
|
|
| T |
47713038 |
aaaccatatatggtcttgtgcagtgtacacctgatttgtcagagcaagattgcaatgattgtttagagtttgctatatcagaaattccaatttactgtta |
47712939 |
T |
|
| Q |
487 |
taacaaggttggcggtatagttctcaaaccaagttgcaatattagacatgaaatctattccttctctgctcct |
559 |
Q |
| |
|
||||||| |||| ||| |||| ||||||||||||| ||||||||| ||||| ||||| |||||||| |||| |
|
|
| T |
47712938 |
taacaagattggttgtagagttgtcaaaccaagttgtaatattagatatgaagtctatcgcttctctgatcct |
47712866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 133 - 179
Target Start/End: Original strand, 6523721 - 6523767
Alignment:
| Q |
133 |
tctcacaaaactttgtccaaaccaaaaagaagcaattggttggtatg |
179 |
Q |
| |
|
||||||| | ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6523721 |
tctcacacagctttgtccaaaccaaaaagaagcaattggttggtatg |
6523767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 133 - 177
Target Start/End: Original strand, 47778037 - 47778081
Alignment:
| Q |
133 |
tctcacaaaactttgtccaaaccaaaaagaagcaattggttggta |
177 |
Q |
| |
|
||||||| |||||||||||||| |||| ||||||||||||||||| |
|
|
| T |
47778037 |
tctcacacaactttgtccaaacaaaaaggaagcaattggttggta |
47778081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 486 - 539
Target Start/End: Complemental strand, 47704941 - 47704888
Alignment:
| Q |
486 |
ataacaaggttggcggtatagttctcaaaccaagttgcaatattagacatgaaa |
539 |
Q |
| |
|
|||||||| |||| || | |||| ||||||||||||||||||||||| |||||| |
|
|
| T |
47704941 |
ataacaagattggtggaagagttatcaaaccaagttgcaatattagatatgaaa |
47704888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 95 - 172
Target Start/End: Complemental strand, 28856588 - 28856511
Alignment:
| Q |
95 |
aatgtttgccgcagtcgtctcaatgattcaagagttcttctcacaaaactttgtccaaaccaaaaagaagcaattggt |
172 |
Q |
| |
|
|||| |||||||||| |||| || |||||||||||||||| ||| || |||||||||| ||||||||||||||||| |
|
|
| T |
28856588 |
aatgattgccgcagttgtcttaacaattcaagagttcttctaacacaaaattgtccaaacaaaaaagaagcaattggt |
28856511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 95 - 175
Target Start/End: Complemental strand, 28861865 - 28861785
Alignment:
| Q |
95 |
aatgtttgccgcagtcgtctcaatgattcaagagttcttctcacaaaactttgtccaaaccaaaaagaagcaattggttgg |
175 |
Q |
| |
|
|||| |||||||||| |||| || |||||||||||||||| ||| || ||||| |||||||||||||||||||||||| |
|
|
| T |
28861865 |
aatgattgccgcagttgtcttaacaattcaagagttcttctaacacaaaaatgtcctaaccaaaaagaagcaattggttgg |
28861785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 120 - 169
Target Start/End: Complemental strand, 28831367 - 28831318
Alignment:
| Q |
120 |
attcaagagttcttctcacaaaactttgtccaaaccaaaaagaagcaatt |
169 |
Q |
| |
|
|||||||||||||||| ||| || ||||||||||||||||||||||||| |
|
|
| T |
28831367 |
attcaagagttcttctaacacaaaattgtccaaaccaaaaagaagcaatt |
28831318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 146 - 216
Target Start/End: Complemental strand, 28875908 - 28875838
Alignment:
| Q |
146 |
tgtccaaaccaaaaagaagcaattggttggtatgttgactgcatgttgcgttactcaaaccgatcaatatt |
216 |
Q |
| |
|
|||||| ||| ||||||||||||||||||| || |||||||| |||||||||||| ||| |||||||| |
|
|
| T |
28875908 |
tgtccataccgaaaagaagcaattggttggattgacaactgcatgctgcgttactcaagccggtcaatatt |
28875838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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