View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1369_low_17 (Length: 503)
Name: NF1369_low_17
Description: NF1369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1369_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 290; Significance: 1e-162; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 8 - 332
Target Start/End: Complemental strand, 39735251 - 39734920
Alignment:
| Q |
8 |
caaatacaaatgcagattttgtcccaccaatgaccaaaagtgtacttaagatcaaatgtatttgggatttgcttcatagcctctgtattgcttaaaattg |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
39735251 |
caaatacaaatgcagattttgtcccaccaatgaccaaaagtgtacttaagatcaaatgtatttgggatttgcttcatggcctctgtattgcttaaaattg |
39735152 |
T |
|
| Q |
108 |
agtgaaaacatatacgtgaagaattgaatgtaatcacagaggtttaatgctctagcttttgcgaccttgggattgggccagtcttggatgttatattcct |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39735151 |
agtgaaaacatatacgtgaagaattgaatgtaatcacagaggtttaatgctctagcttttgcgaccttgggattgggccagtcttggatgttatattcct |
39735052 |
T |
|
| Q |
208 |
ttcagacattacatttcaatactatatttttccttaatttgtgaatgttattttggattgg-------tcgattggacctgcagatgcatcatgctccaa |
300 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| | |||||||||||||||||||||||||||||| |
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| T |
39735051 |
ttcagacgttacatttcaatactatatttttccttaatttgtgaatgttatcttggattggttgattcttgattggacctgcagatgcatcatgctccaa |
39734952 |
T |
|
| Q |
301 |
ttctatgctaaggtattaaaagtctttaatga |
332 |
Q |
| |
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|||||||||||||||||||||||||||||||| |
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| T |
39734951 |
ttctatgctaaggtattaaaagtctttaatga |
39734920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 112; Significance: 2e-56; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 349 - 493
Target Start/End: Original strand, 6931866 - 6932010
Alignment:
| Q |
349 |
cctggtcatatcaatacggtcatgaaatttcgatttctttgtcnnnnnnnnnnnacatataatggatttgcctgaaacgctacacgattttcttttagtc |
448 |
Q |
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| T |
6931866 |
cctggtcatatcaatacggtcatgaaatttcgatttctttgtctttttttttttacatataatggatttgcctgaaacgctacacgattttcttttagtc |
6931965 |
T |
|
| Q |
449 |
tttctgggatcgggtattatattaggaagtctaggagtagtatta |
493 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6931966 |
tttctgggatcgggtattatattaggaagtctaggagtagtatta |
6932010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 403 - 488
Target Start/End: Original strand, 29732419 - 29732504
Alignment:
| Q |
403 |
acatataatggatttgcctgaaacgctacacgattttcttttagtctttctgggatcgggtattatattaggaagtctaggagtag |
488 |
Q |
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|||||||||||||||| | ||||| ||||||||||||| |||| | |||||| |||| ||| |||||||||||||| || |||||| |
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| T |
29732419 |
acatataatggatttgtccgaaacactacacgattttcatttaatgtttctgagatcaggtcttatattaggaagtttaagagtag |
29732504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 107; Significance: 2e-53; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 349 - 493
Target Start/End: Original strand, 14544417 - 14544560
Alignment:
| Q |
349 |
cctggtcatatcaatacggtcatgaaatttcgatttctttgtcnnnnnnnnnnnacatataatggatttgcctgaaacgctacacgattttcttttagtc |
448 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14544417 |
cctggtcatatcaatacggtcatgaaatttcgatttctttgtctttttttttt-acatataatggatttgcctgaaacgctacacgattttcttttagtc |
14544515 |
T |
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| Q |
449 |
tttctgggatcgggtattatattaggaagtctaggagtagtatta |
493 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14544516 |
tttctgggatcgggtattatattaggaagtctaggagtagtatta |
14544560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 107; Significance: 2e-53; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 349 - 493
Target Start/End: Original strand, 507931 - 508074
Alignment:
| Q |
349 |
cctggtcatatcaatacggtcatgaaatttcgatttctttgtcnnnnnnnnnnnacatataatggatttgcctgaaacgctacacgattttcttttagtc |
448 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
507931 |
cctggtcatatcaatacggtcatgaaatttcgatttctttgtctttttttttt-acatataatggatttgcctgaaacgctacacgattttcttttagtc |
508029 |
T |
|
| Q |
449 |
tttctgggatcgggtattatattaggaagtctaggagtagtatta |
493 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
508030 |
tttctgggatcgggtattatattaggaagtctaggagtagtatta |
508074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 349 - 475
Target Start/End: Complemental strand, 18040702 - 18040580
Alignment:
| Q |
349 |
cctggtcatatcaatacggtcatgaaatttcgatttctttgtcnnnnnnnnnnnacatataatggatttgcctgaaacgctacacgattttcttttagtc |
448 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |||| |
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| T |
18040702 |
cctggtcatatcaatacggtcatgaaatttcgatttctttgtcttttttttt--acatataatggatt-gcctgaaacgctacacgattttcttt-agtc |
18040607 |
T |
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| Q |
449 |
tttctgggatcgggtattatattagga |
475 |
Q |
| |
|
||||||||||||||||||||||||||| |
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| T |
18040606 |
tttctgggatcgggtattatattagga |
18040580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 107; Significance: 2e-53; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 349 - 493
Target Start/End: Complemental strand, 9293118 - 9292975
Alignment:
| Q |
349 |
cctggtcatatcaatacggtcatgaaatttcgatttctttgtcnnnnnnnnnnnacatataatggatttgcctgaaacgctacacgattttcttttagtc |
448 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9293118 |
cctggtcatatcaatacggtcatgaaatttcgatttctttgtctttttttttt-acatataatggatttgcctgaaacgctacacgattttcttttagtc |
9293020 |
T |
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| Q |
449 |
tttctgggatcgggtattatattaggaagtctaggagtagtatta |
493 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9293019 |
tttctgggatcgggtattatattaggaagtctaggagtagtatta |
9292975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 93; Significance: 5e-45; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 349 - 493
Target Start/End: Original strand, 26290539 - 26290684
Alignment:
| Q |
349 |
cctggtcatatcaatacggtcatgaaatttcgatttctttgtcnnnnnnnnnnn-acatataatggatttgcctgaaacgctacacgattttcttttagt |
447 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| ||||||||||||||||||||| |
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| T |
26290539 |
cctggtcatatcaatacggtcatgaaatttcgatttctttgtcttttttttttttacatataatggatttgtctgaaatgctacacgattttcttttagt |
26290638 |
T |
|
| Q |
448 |
ctttctgggatcgggtattatattaggaagtctaggagtagtatta |
493 |
Q |
| |
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||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
26290639 |
ctttctgggatcgggtattatattaggaagtttaggagtagtatta |
26290684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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