View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1369_low_20 (Length: 473)
Name: NF1369_low_20
Description: NF1369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1369_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 378; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 12 - 444
Target Start/End: Original strand, 40551743 - 40552175
Alignment:
| Q |
12 |
aatactcgaaatagaaaactcagtgctacaagctatccatatttagtgatttgtatgcctgctaataaatagaatacataaacaaagacatgaatgcgaa |
111 |
Q |
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| T |
40551743 |
aatactcgaaatagaaaactcggtgctacaagctatccatatttagtgatttgtatgcctgctaataaatagaatacataaacaaagatatgaatgcgaa |
40551842 |
T |
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| Q |
112 |
ataaccatgcataagagtacagatttaagtatgtaaatttgtcgccctatcccaatgttagagtaatctaaacaactgaaaacaataataccactgaact |
211 |
Q |
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| T |
40551843 |
ataaccatgcataagagtacagatttaagtatgtaaatttgtcgccctatcccaatgttagagtgatctaaacaactgaaaacaataataccacagaact |
40551942 |
T |
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| Q |
212 |
actgaaacaatccgtatatgattaatttttcaaaaactgcacacgtataatttagtttaaaaattgccctaggaaaagataaataggcgcaaggcaagaa |
311 |
Q |
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| T |
40551943 |
actgaaacaatccgtatatgattaatttttcaaaaactgcacacgtataatttagtttaaaaattgccctaggaaaagataaataagcgcaaggcaagaa |
40552042 |
T |
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| Q |
312 |
ctctcctcaaaaccttagaagtatctgccaactcaggcttaggttcaaacttgaccagtcgacnnnnnnnnncacaacggcaaggaaaaataaataaacc |
411 |
Q |
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| T |
40552043 |
ctctcctcaaaaccttagaagtatctgccaactcaggcttaggttcaaacttgaccagttgacaaaaaaaaacacaacggcaaggaaaaataaataaacc |
40552142 |
T |
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| Q |
412 |
aacacgaaatatagttggaaaggagctgaaatg |
444 |
Q |
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| T |
40552143 |
aacacgaaatctagttggaaaggagctgaaatg |
40552175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 208 - 273
Target Start/End: Original strand, 40569110 - 40569173
Alignment:
| Q |
208 |
aactactgaaacaatccgtatatgattaatttttcaaaaactgcacacgtataatttagtttaaaa |
273 |
Q |
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| T |
40569110 |
aactactgaaacagtcggtatatgactaatttttcaaaaactgcata--tataatttagtttaaaa |
40569173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 108
Target Start/End: Original strand, 40568971 - 40569059
Alignment:
| Q |
19 |
gaaatagaaaactcagtgctacaagctatccatatttagtgatttgtatgcctgctaataaatagaatacataaacaaagacatgaatgc |
108 |
Q |
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| T |
40568971 |
gaaacagaaaactcagtgctgcaagtcatccacaattagtgatatgtatgcctgctgctgaatagaattagtaaac-aagacatgaatgc |
40569059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 103; Significance: 5e-51; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 22 - 236
Target Start/End: Original strand, 15110325 - 15110539
Alignment:
| Q |
22 |
atagaaaactcagtgctacaagctatccatatttagtgatttgtatgcctgctaataaatagaatacataaacaaagacatgaatgcgaaataaccatgc |
121 |
Q |
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||||| ||||| ||||||||||| ||||||||||||||||||||||| |||||| | |||||||||||||||| | || |||||| |||||| || || |
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| T |
15110325 |
atagacaactcggtgctacaagccatccatatttagtgatttgtatggctgctattgaatagaatacataaacgacgagatgaatatgaaatattcacgc |
15110424 |
T |
|
| Q |
122 |
ataagagtacagatttaagtatgtaaatttgtcgccctatcccaatgttagagtaatctaaacaactgaaaacaataataccactgaactactgaaacaa |
221 |
Q |
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| T |
15110425 |
ataagagtacaaatgtaagtacgtaaatttgtcaccctatcccaattttagagtaatccgaacaaccaaaaacaataataccacaaaactattaaaacaa |
15110524 |
T |
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| Q |
222 |
tccgtatatgattaa |
236 |
Q |
| |
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||||||||| ||||| |
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| T |
15110525 |
tccgtatataattaa |
15110539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 79 - 202
Target Start/End: Complemental strand, 15110018 - 15109895
Alignment:
| Q |
79 |
aatagaatacataaacaaagacatgaatgcgaaataaccatgcataagagtacagatttaagtatgtaaatttgtcgccctatcccaatgttagagtaat |
178 |
Q |
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|||||||||||||||| |||| ||||||| |||||| ||| | | |||||||| ||||||||| ||||||||||| ||||||||||||||||||||||| |
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| T |
15110018 |
aatagaatacataaacgaagagatgaatgtgaaatatccactcgttagagtacaaatttaagtacgtaaatttgtcaccctatcccaatgttagagtaat |
15109919 |
T |
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| Q |
179 |
ctaaacaactgaaaacaataatac |
202 |
Q |
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| T |
15109918 |
ccaaacaaccaaaaacaagaatac |
15109895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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