View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1369_low_21 (Length: 467)
Name: NF1369_low_21
Description: NF1369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1369_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 286; Significance: 1e-160; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 438
Target Start/End: Original strand, 23420475 - 23420924
Alignment:
| Q |
1 |
cgggcattatttttcaacacccacatccaatagctgaaaattggttcagctaaatcaccacataactctttataagtttgagcaactgagaaatcaccaa |
100 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
23420475 |
cgggcattatttttcaacacccccatccaatagctgaaaattggttcaactaaatcaccacataactctttataagcttgagcaactgagaaatcaccaa |
23420574 |
T |
|
| Q |
101 |
cacgcacaccaggccctacgcacaaacatcgttaccataatcaatatttggcggcgggatggctctatatctgtccagaatttcaacagggagctatcct |
200 |
Q |
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||||| |||||||||||||||||||||||| ||||||||||||||||||| || |||||||||||| |||||||||||||||||||||||||||| ||| |
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| T |
23420575 |
cacgcgtaccaggccctacgcacaaacatcgctaccataatcaatatttggtggtgggatggctctaaatctgtccagaatttcaacagggagctaccct |
23420674 |
T |
|
| Q |
201 |
tgcaaattattcattctccactc------ctcattgacaagctcttcagctttaacatattgcatgccaatagggatattaatatcaaggttgatctgtt |
294 |
Q |
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||||||||||||||||||||||| |||| |||||||||||||| |||||||||||| ||||||||| |||||||||||||||||||||||| || |
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| T |
23420675 |
tgcaaattattcattctccactccccgtgctcactgacaagctcttcaactttaacatattacatgccaattgggatattaatatcaaggttgatcactt |
23420774 |
T |
|
| Q |
295 |
ttaatccttaatctaaccaacaatacttctaagcttgaactggttcgcca-------tttcaaaaaatccaatgcgccaagctactaacattagttataa |
387 |
Q |
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|||||| |||||||||||||||||||||| ||||||||||| | | ||| ||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
23420775 |
ttaatctctaatctaaccaacaatacttctcagcttgaactgatccaccatttcaattttcaaataatccaatgcgccaagctactaacattagttataa |
23420874 |
T |
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| Q |
388 |
tttcaccataactttccacaaactagaatcatttgattttgctacaacctc |
438 |
Q |
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|||||| || |||||||||||||||||||| ||| ||||||||||||||| |
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| T |
23420875 |
tttcactttatctttccacaaactagaatca-ttgtttttgctacaacctc |
23420924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 285
Target Start/End: Complemental strand, 23882836 - 23882546
Alignment:
| Q |
1 |
cgggcattatttttcaacacccacatccaatagctgaaaattggttcagctaaatcaccacataactctttataagtttgagcaactgagaaatcaccaa |
100 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
23882836 |
cgggcattatttttcaacacgcacatccaatagctgaaaattggttcagctaaatcaccacataactctttataagtttgagcaagtgagaaatcaccaa |
23882737 |
T |
|
| Q |
101 |
cacgcacaccaggccctacgcacaaacatcgttaccataatcaatatttggcggcgggatggctctatatctgtccagaatttcaacagggagctatcct |
200 |
Q |
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||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
23882736 |
cactcacaccaggccctacgcacaaacatagttaccataatcaatatttggcggcgggatggctctatatctgtccagaatttcaacagggagttatcct |
23882637 |
T |
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| Q |
201 |
tgcaaattattcattctccactcc------tcattgacaagctcttcagctttaacatattgcatgccaatagggatattaatatcaaggt |
285 |
Q |
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||||||| |||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
23882636 |
tgcaaatgattcattctccactcctcatgctcattgacaagctcttcaactttaacatattgcatgccaatagggatattaatatcaaggt |
23882546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 280 - 438
Target Start/End: Complemental strand, 23878568 - 23878410
Alignment:
| Q |
280 |
caaggttgatctgttttaatccttaatctaaccaacaatacttctaagcttgaactggttcgccatttcaaaaaatccaatgcgccaagctactaacatt |
379 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
23878568 |
caaggttgatctgttttaatccttaatccaaccaacaatacttctaagcttgaactggttcgccatttcaaaaaatccaatgcgccaagctactgacatt |
23878469 |
T |
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| Q |
380 |
agttataatttcaccataactttccacaaactagaatcatttgattttgctacaacctc |
438 |
Q |
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| T |
23878468 |
agttataatttcaccataactttccacaaactagaatcatttgattttgctacaacctc |
23878410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 269 - 428
Target Start/End: Complemental strand, 23876362 - 23876199
Alignment:
| Q |
269 |
gatattaatatcaaggttgatctgttttaatccttaatctaaccaacaatacttctaagcttgaactggttcgccatttcaaaaaatccaatgcgccaag |
368 |
Q |
| |
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||||||||||||||| | ||| ||||||||| | ||| |||||||||| || ||||||||| |||||| | ||||||| ||||| ||| | |||| |
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| T |
23876362 |
gatattaatatcaagatcaatcacttttaatccctcatcaaaccaacaatgctctcaagcttgaaatggttcactgtttcaaataatcctatgtgtcaag |
23876263 |
T |
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| Q |
369 |
ctact-aacatta---gttataatttcaccataactttccacaaactagaatcatttgattttg |
428 |
Q |
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||||| || |||| | |||||||||||||| |||||||||| ||||||| |||||||||| |
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| T |
23876262 |
ctacttaagattataggccataatttcaccatatttttccacaaattagaatcttttgattttg |
23876199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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