View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1369_low_24 (Length: 451)
Name: NF1369_low_24
Description: NF1369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1369_low_24 |
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Alignment Details
Target: chr2 (Bit Score: 264; Significance: 1e-147; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 94 - 441
Target Start/End: Original strand, 12812122 - 12812457
Alignment:
| Q |
94 |
cacagcttttcacttgccatttgtttataatgtgcaaattatggacaatgatcaataaaagaaaaatcatgagagccaaacaagacatagatatcaatac |
193 |
Q |
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| T |
12812122 |
cacagcttttcacttgccatttgtttataatttgcaaattatggacaatgatcaataaaagaaaaatcatgaaagccaaacaagacatagatatcaatac |
12812221 |
T |
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| Q |
194 |
aatatatacaccaaataagacaaacccacaattattactaaacaacctatgtcaaagtttggtgaattgatttaggcaatttggtaacaatggagactgt |
293 |
Q |
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| T |
12812222 |
aatatatacatcaaataagacaaacccaaaattattactaaacaacctctgtcaaagtttggtgaattgatttaggcaatttggtaacaatggagactgt |
12812321 |
T |
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| Q |
294 |
aattgcacgcatatttttcacatattgattactatctccaagtggcgaaatagctgaactagtggtgccattgcatttcttctcacaagaatcagccaa- |
392 |
Q |
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| T |
12812322 |
aattgcacacatatttttcacatattgattactatctccaagtggcgaaata--------------gccattgcatttcttctcacaagaatcagccaat |
12812407 |
T |
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| Q |
393 |
-atttccagcagtggttgcactttgcttgacaccattataatcacctttg |
441 |
Q |
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| T |
12812408 |
tatttccagcagtggttgcactttgcttgacaccattataatcacttttg |
12812457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 210 - 441
Target Start/End: Original strand, 12838120 - 12838354
Alignment:
| Q |
210 |
aagacaaacccacaattattactaaacaacctatgtcaaagtttggtgaattgatttaggcaatttggtaacaatggagactgtaattgcacgcatattt |
309 |
Q |
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| T |
12838120 |
aagacaataccacaattagtactaaaaaatttatggtaaaatttggtgagttgattgaggaaattgggtagcaatggagactgtaattgcacacatattt |
12838219 |
T |
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| Q |
310 |
ttcacatattgattactatctccaagtggcgaaata---gctgaactagtggtgccattgcatttcttctcacaagaatcagccaaatttccagcagtgg |
406 |
Q |
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| T |
12838220 |
ttcacatattgattactatccccaagttgcgaaagaacagctgaactagtggtgccattgcatttcttcccacaagtatcagccaaatttccagcagtgg |
12838319 |
T |
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| Q |
407 |
ttgcactttgcttgacaccattataatcacctttg |
441 |
Q |
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| T |
12838320 |
ttgcactttgtttgacaccattataatcacttttg |
12838354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 281 - 441
Target Start/End: Original strand, 12831364 - 12831527
Alignment:
| Q |
281 |
caatggagactgtaattgcacgcatatttttcacatattgattactatctccaagtggcgaaata---gctgaactagtggtgccattgcatttcttctc |
377 |
Q |
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| T |
12831364 |
caatggagactgtaattgcacacatatttttcacatattgattactatccccaagttgcgaaagaacagctgaactagtggtgccattgcatttcttccc |
12831463 |
T |
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| Q |
378 |
acaagaatcagccaaatttccagcagtggttgcactttgcttgacaccattataatcacctttg |
441 |
Q |
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| T |
12831464 |
acaagtatcagccaaatttccagcagtggttgcactttgtttgacaccattataatcacttttg |
12831527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 129 - 226
Target Start/End: Original strand, 12837936 - 12838036
Alignment:
| Q |
129 |
aaattatggacaatgatcaataaaagaaaa---atcatgagagccaaacaagacatagatatcaatacaatatatacaccaaataagacaaacccacaat |
225 |
Q |
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| T |
12837936 |
aaattatggacaatgatcaacataagaaaaaaaatcatgacagccataaaagacatatatatcaatactatatatacacaaaataagacaaatccaaaat |
12838035 |
T |
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| Q |
226 |
t |
226 |
Q |
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| T |
12838036 |
t |
12838036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 97 - 142
Target Start/End: Original strand, 12830947 - 12830992
Alignment:
| Q |
97 |
agcttttcacttgccatttgtttataatgtgcaaattatggacaat |
142 |
Q |
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| T |
12830947 |
agctttttactgcccatttgtttataatgtacaaattatggacaat |
12830992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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