View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1369_low_25 (Length: 443)
Name: NF1369_low_25
Description: NF1369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1369_low_25 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 370; Significance: 0; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 28 - 437
Target Start/End: Complemental strand, 1047183 - 1046775
Alignment:
| Q |
28 |
caagtacaacatatgtttattcattcaagaaaagggtagtcggtataaccaagaactggatcagaagtgcagaatgtctccatattatacttgtttaggg |
127 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1047183 |
caagtacaacatatgtttattcattcaagaaaagggtagtcggtataaccaagaactggatcagaagtgcagaatgtctccatattatacttgtttaggg |
1047084 |
T |
|
| Q |
128 |
gagcattaagtgcaaacctctttggcaaatctggattagctatgaataaaacggtcgtaagcaacaagatctggcctattttcagctatagcattgatcc |
227 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
1047083 |
gagcattaagtgcaaatctctttggcaaatctggattagctatgaataaa-cggtcgtaagcaacaagatctaccctattttcagctatagcattgatcc |
1046985 |
T |
|
| Q |
228 |
cgtctagtctttcatagcttccggtaaccatgaaagtgtcattgaaagcctttctcgctggcaccaagttgtgaagacattttgttttatcgtcaatagt |
327 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
1046984 |
cgtctagtctttcatagcttccggtaaccatgaaagtgccattgaaagcctttctcactggcaccaagttgtgaagacattttgttttatcatcaatagt |
1046885 |
T |
|
| Q |
328 |
ttcattacttattcattctaccatatgacaatacaaaataccatatttattgagggcattaaccatgtaaagccccaatgccttcggatttgagtctcca |
427 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1046884 |
ttcattacttattcattctaccatatgacaatacagaataccatatttattgagggcattaaccatgtaaagccccaatgccttcggatttgagtctcca |
1046785 |
T |
|
| Q |
428 |
tattcttcga |
437 |
Q |
| |
|
||||||||| |
|
|
| T |
1046784 |
cattcttcga |
1046775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 32 - 427
Target Start/End: Complemental strand, 1053851 - 1053460
Alignment:
| Q |
32 |
tacaacatatgtttattcattcaagaaaagggtagtcggtataaccaagaactggatcagaagtgcagaatgtctccatattatacttgtttaggggagc |
131 |
Q |
| |
|
|||| |||||||||| | |||||||| |||||||||| |||||||| | |||||||||||||||| ||||||||||| ||||||||||||| || ||||| |
|
|
| T |
1053851 |
tacatcatatgtttaattattcaagagaagggtagtcagtataacctataactggatcagaagtgtagaatgtctccctattatacttgttaagaggagc |
1053752 |
T |
|
| Q |
132 |
attaagtgcaaacctctttggcaaatctggattagctatgaataaaacggtcgtaagcaacaagatctggcctattttcagctatagcattgatcccgtc |
231 |
Q |
| |
|
|||||||||||| |||||||| ||||||||||||| |||||| ||||| | ||||||| |||||||| |||||||||||||||||||||||| || || |
|
|
| T |
1053751 |
attaagtgcaaatctctttggtaaatctggattagatatgaa-caaacgaccataagcaataagatctgccctattttcagctatagcattgattccatc |
1053653 |
T |
|
| Q |
232 |
tagtctttcatagcttccggtaaccatgaaagtgtcattgaaagcctttctcgctggcaccaagttgtgaagacattttgttttatcgtcaatagtttca |
331 |
Q |
| |
|
| |||||||||||| ||| |||||||| ||||| |||||||| ||||||| || ||||||| | | | |||||| ||||| || |||| | |||| |
|
|
| T |
1053652 |
ttgtctttcatagcctccagtaaccataaaagttccattgaaaacctttcttattgacaccaagctataatgacattcagttttctcatcaagaatttc- |
1053554 |
T |
|
| Q |
332 |
ttacttattcattctaccatatgacaatacaaaataccatatttattgagggcattaaccatgtaaagccccaatgccttcggatttgagtctcca |
427 |
Q |
| |
|
|| || ||| |||||||||||||| | |||||||||||||||||||||||| ||||| ||||| |||||| | | ||||||||||||||| |
|
|
| T |
1053553 |
--cattcttggttccaccatatgacaataaagaataccatatttattgagggcattcaccatataaagtcccaattcttggggatttgagtctcca |
1053460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 47 - 293
Target Start/End: Complemental strand, 1044578 - 1044333
Alignment:
| Q |
47 |
ttcattcaagaaaagggtagtcggtataaccaagaactggatcagaagtgcagaatgtctccatattatacttgtttaggggagcattaagtgcaaacct |
146 |
Q |
| |
|
||||||||||||| || ||||| || ||||||| ||| ||||||||| || ||||||||||| ||||||||||||| || ||||||||||||||||| || |
|
|
| T |
1044578 |
ttcattcaagaaagggatagtcagtgtaaccaacaaccggatcagaaatgtagaatgtctccctattatacttgttgagaggagcattaagtgcaaatct |
1044479 |
T |
|
| Q |
147 |
ctttggcaaatctggattagctatgaataaaacggtcgtaagcaacaagatctggcctattttcagctatagcattgatcccgtctagtctttcatagct |
246 |
Q |
| |
|
|||||||||||||||||| |||| ||| ||||| | ||| | |||||||||| | | |||||||||||||||| |||||||||| |||| ||||||| |
|
|
| T |
1044478 |
ctttggcaaatctggatttgctaagaa-caaacgaccataaactacaagatctgccttgttttcagctatagcatcgatcccgtcttgtctgtcatagcc |
1044380 |
T |
|
| Q |
247 |
tccggtaaccatgaaagtgtcattgaaagcctttctcgctggcacca |
293 |
Q |
| |
|
||| | | ||||||||| | ||||||||||||||||| |||||||| |
|
|
| T |
1044379 |
tcctgcagccatgaaagagccattgaaagcctttctcattggcacca |
1044333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 42 - 228
Target Start/End: Complemental strand, 1059106 - 1058921
Alignment:
| Q |
42 |
gtttattcattcaagaaaagggtagtcggtataaccaagaactggatcagaagtgcagaatgtctccatattatacttgtttaggggagcattaagtgca |
141 |
Q |
| |
|
|||| |||||||||||||||||||||| |||||||| | ||||||||| |||||| |||||||| || | |||||||||||||| ||||||||||||||| |
|
|
| T |
1059106 |
gtttcttcattcaagaaaagggtagtcagtataacctataactggatctgaagtgtagaatgtcgccctgttatacttgtttagaggagcattaagtgca |
1059007 |
T |
|
| Q |
142 |
aacctctttggcaaatctggattagctatgaataaaacggtcgtaagcaacaagatctggcctattttcagctatagcattgatccc |
228 |
Q |
| |
|
|| ||||| ||||||||||||||||||| ||| ||||| | || ||||||| |||| ||||||||||||||| ||||||||||| |
|
|
| T |
1059006 |
aatctcttcggcaaatctggattagctaagaa-caaacgaccatatacaacaaggtctgtcctattttcagctatggcattgatccc |
1058921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 47 - 433
Target Start/End: Complemental strand, 1071920 - 1071538
Alignment:
| Q |
47 |
ttcattcaagaaaagggtagtcggtataaccaagaactggatcagaagtgcagaatgtctccatattatacttgtttaggggagcattaagtgcaaacct |
146 |
Q |
| |
|
|||||||||||||||||||||| |||||||| ||||||||||||||| | | ||||||||| | |||||||||||||| ||||||| ||||||||| || |
|
|
| T |
1071920 |
ttcattcaagaaaagggtagtcagtataacctagaactggatcagaaacgtaaaatgtctccctgttatacttgtttagaggagcatcaagtgcaaatct |
1071821 |
T |
|
| Q |
147 |
ctttggcaaatctggattagctatgaataaaacggtcgtaagcaacaagatctggcctattttcagctatagcattgatcccgtctagtctttcatagct |
246 |
Q |
| |
|
||||||||||||||||||||||| ||| ||||| | || |||| || |||| ||| ||||||||||| ||||||||||| || ||| || || | |
|
|
| T |
1071820 |
ctttggcaaatctggattagctaagaa-caaacgaccatatacaactaggtctgccctgttttcagctatggcattgatcccatcatgtcggtcgtaacc |
1071722 |
T |
|
| Q |
247 |
tccggtaaccatgaaagtgtcattgaaagcctttctcgctggcaccaagttgtgaagacattttgttttatcgtcaatagtttcattacttattcattct |
346 |
Q |
| |
|
||| | ||||||||||||| | ||||| ||||||||| |||||| | | ||| | |||| ||||| || ||| |||| || | || || ||| |
|
|
| T |
1071721 |
tcctgcaaccatgaaagtgcctttgaaggcctttctcattggcacaaggctgtcggggcattcagttttttcaccaacagtt--atca-ttcttggttcc |
1071625 |
T |
|
| Q |
347 |
accatatgacaatacaaaataccatatttattgagggcattaaccatgtaaagccccaatgccttcggatttgagtctccatattct |
433 |
Q |
| |
|
||||| |||||||| | |||||| ||||||||||||||||||||||| ||||| |||||| | || || || ||||||||| ||||| |
|
|
| T |
1071624 |
accatgtgacaataaagaataccgtatttattgagggcattaaccatataaagtcccaattctttagggttggagtctccacattct |
1071538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 47 - 283
Target Start/End: Complemental strand, 1034191 - 1033956
Alignment:
| Q |
47 |
ttcattcaagaaaagggtagtcggtataaccaagaactggatcagaagtgcagaatgtctccatattatacttgtttaggggagcattaagtgcaaacct |
146 |
Q |
| |
|
||||||||||||| || ||||| |||||||| | ||| |||||||||||| ||||||||||| | ||||| || || || ||||| || |||||||| || |
|
|
| T |
1034191 |
ttcattcaagaaagggatagtccgtataacctacaaccggatcagaagtgtagaatgtctccctgttatatttattgagaggagcgtttagtgcaaatct |
1034092 |
T |
|
| Q |
147 |
ctttggcaaatctggattagctatgaataaaacggtcgtaagcaacaagatctggcctattttcagctatagcattgatcccgtctagtctttcatagct |
246 |
Q |
| |
|
||| |||||||||||||| |||| ||| ||||| | ||| |||||||||||| |||||| || ||||||||||||||||| ||| |||| ||||| | |
|
|
| T |
1034091 |
cttcggcaaatctggattcgctaagaa-caaacgaccataaacaacaagatctgccctattatctgctatagcattgatcccatcttgtctgtcataacc |
1033993 |
T |
|
| Q |
247 |
tccggtaaccatgaaagtgtcattgaaagcctttctc |
283 |
Q |
| |
|
||| | |||||||||||| ||||||||||||||||| |
|
|
| T |
1033992 |
tcccgcaaccatgaaagtaccattgaaagcctttctc |
1033956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 42 - 433
Target Start/End: Complemental strand, 1066198 - 1065811
Alignment:
| Q |
42 |
gtttattcattcaagaaaagggtagtcggtataaccaagaactggatcagaagtgcagaatgtctccatattatacttgtttaggggagcattaagtgca |
141 |
Q |
| |
|
|||| ||||||||||||| |||||||| |||||||| ||||||||||||||| || |||| |||||| | ||||| ||||| || ||||||| ||||||| |
|
|
| T |
1066198 |
gtttcttcattcaagaaaggggtagtcagtataacctagaactggatcagaaatgtagaacgtctccctgttatatttgttcagaggagcatcaagtgca |
1066099 |
T |
|
| Q |
142 |
aacctctttggcaaatctggattagctatgaataaaacggtcgtaagcaacaagatctggcctattttcagctatagcattgatcccgtctagtctttca |
241 |
Q |
| |
|
|| |||||||| |||||||||||||||| ||| ||||| | || ||||||| |||| ||| ||||||||||| ||||||||||| || ||| || |
|
|
| T |
1066098 |
aatctctttggtaaatctggattagctaagaa-caaacgaccatatacaacaaggtctgccctgttttcagctatggcattgatcccatcatgtcggtcg |
1066000 |
T |
|
| Q |
242 |
tagcttccggtaaccatgaaagtgtcattgaaagcctttctcgctggcaccaagttgtgaagacattttgttttatcgtcaatagtttcattacttattc |
341 |
Q |
| |
|
|| | ||| | ||||||||||||| | ||||| ||||||||| |||||| | | ||| | |||| ||||| || ||| |||| || || || |
|
|
| T |
1065999 |
taacctcctgcaaccatgaaagtgcctttgaaggcctttctcattggcacaaggctgtcggggcattcagttttttcaccaacagtt---ttcattcttg |
1065903 |
T |
|
| Q |
342 |
attctaccatatgacaatacaaaataccatatttattgagggcattaaccatgtaaagccccaatgccttcggatttgagtctccatattct |
433 |
Q |
| |
|
||| ||||||||||| || | |||||||||||||||||||||||| ||||| ||||| |||||| | || || || ||||||||| ||||| |
|
|
| T |
1065902 |
gttccaccatatgacagtaaagaataccatatttattgagggcattgaccatataaagtcccaattcattggggttggagtctccacattct |
1065811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 53 - 308
Target Start/End: Original strand, 1640371 - 1640625
Alignment:
| Q |
53 |
caagaaaagggtagtcggtataaccaagaactggatcagaagtgcagaatgtctccatattatacttgtttaggggagcattaagtgcaaacctctttgg |
152 |
Q |
| |
|
|||||||||||||||| |||||||| ||||| |||||||| ||| ||||||| ||| ||||||||||| || ||||||| || || || |||||||| |
|
|
| T |
1640371 |
caagaaaagggtagtctgtataaccgagaaccggatcagatgtgtagaatgtttcccggttatacttgttgagaggagcatcgagcgcgaatctctttgg |
1640470 |
T |
|
| Q |
153 |
caaatctggattagctatgaataaaacggtcgtaagcaacaagatctggcctattttcagctatagcattgatcccgtctagtctttcatagcttccggt |
252 |
Q |
| |
|
||||||||||||| ||| || || || | |||||||||||||||| | |||||||| |||| |||| ||||| ||| ||| ||||| ||||| |
|
|
| T |
1640471 |
taaatctggattagatat-aaacaagcgaccataagcaacaagatctgtcttattttcaactatggcatcaatcccatcttgtcgcgaatagcctccggc |
1640569 |
T |
|
| Q |
253 |
aaccatgaaagtgtcattgaaagcctttctcgctggcaccaagttgtgaagacatt |
308 |
Q |
| |
|
||| || ||||| ||||||| || |||||| |||||||||| |||||||||||| |
|
|
| T |
1640570 |
aactataaaagttccattgaaggcttttctcattggcaccaagctgtgaagacatt |
1640625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 347 - 406
Target Start/End: Complemental strand, 1058805 - 1058746
Alignment:
| Q |
347 |
accatatgacaatacaaaataccatatttattgagggcattaaccatgtaaagccccaat |
406 |
Q |
| |
|
|||| |||||| || | ||||||||||||||||||||||||| |||| ||||| |||||| |
|
|
| T |
1058805 |
accacatgacagtaaagaataccatatttattgagggcattagccatataaagtcccaat |
1058746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 371 - 433
Target Start/End: Original strand, 1640685 - 1640747
Alignment:
| Q |
371 |
tatttattgagggcattaaccatgtaaagccccaatgccttcggatttgagtctccatattct |
433 |
Q |
| |
|
|||||| |||||||||||||||| |||||||||||| | | ||||| ||||||||| ||||| |
|
|
| T |
1640685 |
tatttactgagggcattaaccatataaagccccaattcttcaggattggagtctccacattct |
1640747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University