View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1369_low_27 (Length: 435)

Name: NF1369_low_27
Description: NF1369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1369_low_27
NF1369_low_27
[»] chr5 (1 HSPs)
chr5 (23-406)||(3920468-3920873)
[»] chr3 (4 HSPs)
chr3 (42-170)||(43263802-43263929)
chr3 (40-99)||(21708295-21708354)
chr3 (63-160)||(41799977-41800074)
chr3 (45-123)||(36747224-36747302)
[»] scaffold0700 (1 HSPs)
scaffold0700 (48-136)||(5144-5232)
[»] chr6 (2 HSPs)
chr6 (33-117)||(6562350-6562434)
chr6 (68-136)||(5720609-5720677)
[»] chr8 (2 HSPs)
chr8 (48-115)||(27823241-27823308)
chr8 (46-96)||(39240870-39240920)
[»] chr7 (4 HSPs)
chr7 (70-172)||(28117313-28117414)
chr7 (48-116)||(19527044-19527112)
chr7 (68-153)||(45266697-45266782)
chr7 (47-115)||(38947521-38947589)
[»] chr1 (3 HSPs)
chr1 (67-179)||(11803124-11803236)
chr1 (46-136)||(15826454-15826546)
chr1 (46-136)||(29141940-29142032)
[»] chr4 (2 HSPs)
chr4 (50-133)||(45685742-45685825)
chr4 (45-81)||(13968173-13968209)


Alignment Details
Target: chr5 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 23 - 406
Target Start/End: Complemental strand, 3920873 - 3920468
Alignment:
Q  23 tgatgattccttaccagacaaccgtattacaaaatcaaccgtttgattgaaagatattataatatagatcatgtctattacatttgacattaattaaaaa 122  Q
    |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  3920873 tgataattccttaccagacaaccgtattacaaaatcaaccatttgattgaaagatattataatatagatcatatctattacatttgacattaattaaaaa 3920774  T
Q  123 taatttgatatgtcgatgtcatacatcaaaagtaacttcttatgaactttaaaaaacgggttagttttagcag----------------------gcaca 200  Q
    | |||||||||||| ||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||                      |||||    
T  3920773 tcatttgatatgtcaatgacatacatcaaaagaaacttcttatgaactttaaaaaacgggttagttttagcagaggggaattatgagtgaaaaatgcaca 3920674  T
Q  201 aaaaccaatagtaccttggtttgaaaaatgaatgaaagtggctcagtgtgaatgaattaccactgagtagcaacattgaatgcactcaactactcattgt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3920673 aaaaccaatagtaccttggtttgaaaaatgaatgaaagtggctcagtgtgaatgaattaccactgagtagcaacattgaatgcactcaactactcattgt 3920574  T
Q  301 tcatcgaattcaattttaactgtgaccacatcaacagcaacagctagggctttgtctgatctgagtatcgcagtctttaggtagtaaccatttatttcat 400  Q
    |||||||||||||||||||||||||||||||||||||||||||| |   |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3920573 tcatcgaattcaattttaactgtgaccacatcaacagcaacagcaactactttgtctgatctgagtatcgcagtctttaggtagtaaccatttatttcat 3920474  T
Q  401 ctcact 406  Q
     |||||    
T  3920473 ttcact 3920468  T

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Target: chr3 (Bit Score: 53; Significance: 3e-21; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 42 - 170
Target Start/End: Complemental strand, 43263929 - 43263802
Alignment:
Q  42 aaccgtattacaaaatcaaccgtttgattgaaagatattataatatagatcatgtctattacatttgacattaattaaaaataatttgatatgtcgatgt 141  Q
    |||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||  | || |||||||||| | | || |||||||||| | |||     
T  43263929 aaccgttttacaaaatca-ccgtttgattgaaacatattataatatagatcatgtctacaaaatatgacattaatcatatattatttgatatggcaatga 43263831  T
Q  142 catacatcaaaagtaacttcttatgaact 170  Q
     ||| ||||||| |||| |||||||||||    
T  43263830 gataaatcaaaattaacgtcttatgaact 43263802  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 40 - 99
Target Start/End: Original strand, 21708295 - 21708354
Alignment:
Q  40 acaaccgtattacaaaatcaaccgtttgattgaaagatattataatatagatcatgtcta 99  Q
    ||||||||||||||||||||| |||| ||||||||||| ||| |  ||||||||||||||    
T  21708295 acaaccgtattacaaaatcaatcgttggattgaaagatgttacatcatagatcatgtcta 21708354  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 63 - 160
Target Start/End: Complemental strand, 41800074 - 41799977
Alignment:
Q  63 gtttgattgaaagatattataatatagatcatgtctattacatttgacattaattaaaaataatttgatatgtcgatgtcatacatcaaaagtaactt 160  Q
    |||||||||||| ||||||||| ||| ||||| ||||  | |||| |||||||| |||||  |||||||||||| ||   ||||||||||| ||||||    
T  41800074 gtttgattgaaatatattataacataaatcatatctacaaaattttacattaatcaaaaactatttgatatgtcaattaaatacatcaaaattaactt 41799977  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 45 - 123
Target Start/End: Complemental strand, 36747302 - 36747224
Alignment:
Q  45 cgtattacaaaatcaaccgtttgattgaaagatattataatatagatcatgtctattacatttgacattaattaaaaat 123  Q
    ||||||| |||||  || ||| |||||||| ||||||||| ||| ||||| ||||| | |||||| |||||||||||||    
T  36747302 cgtattaaaaaattgactgttagattgaaacatattataacatatatcatttctataaaatttgatattaattaaaaat 36747224  T

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Target: scaffold0700 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0700
Description:

Target: scaffold0700; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 48 - 136
Target Start/End: Original strand, 5144 - 5232
Alignment:
Q  48 attacaaaatcaaccgtttgattgaaagatattataatatagatcatgtctattacatttgacattaattaaaaataatttgatatgtc 136  Q
    |||| ||||| || |||| ||||||||| |||||||| ||||||||||||||| |  |||||||||||| |||||| ||||||||||||    
T  5144 attaaaaaattaaacgttggattgaaagctattataacatagatcatgtctataaagtttgacattaataaaaaattatttgatatgtc 5232  T

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Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 33 - 117
Target Start/End: Complemental strand, 6562434 - 6562350
Alignment:
Q  33 ttaccagacaaccgtattacaaaatcaaccgtttgattgaaagatattataatatagatcatgtctattacatttgacattaatt 117  Q
    |||||| | |||| |||||||||||||||| || ||||||||  |||||| | ||||||||||||||  | ||||||||||||||    
T  6562434 ttaccacataaccatattacaaaatcaaccattggattgaaaactattatcacatagatcatgtctacaaaatttgacattaatt 6562350  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 68 - 136
Target Start/End: Complemental strand, 5720677 - 5720609
Alignment:
Q  68 attgaaagatattataatatagatcatgtctattacatttgacattaattaaaaataatttgatatgtc 136  Q
    |||||||||||| |||  ||||| ||||||||| | ||||||||| ||| | |||| ||||||||||||    
T  5720677 attgaaagatataatagcatagaccatgtctataaaatttgacatgaatcataaatcatttgatatgtc 5720609  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 48 - 115
Target Start/End: Complemental strand, 27823308 - 27823241
Alignment:
Q  48 attacaaaatcaaccgtttgattgaaagatattataatatagatcatgtctattacatttgacattaa 115  Q
    ||||||||||| |||||| |||||||||||||||||| ||||||||| | ||| | |||| |||||||    
T  27823308 attacaaaatcgaccgttggattgaaagatattataacatagatcatatttatgaaattttacattaa 27823241  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 46 - 96
Target Start/End: Original strand, 39240870 - 39240920
Alignment:
Q  46 gtattacaaaatcaaccgtttgattgaaagatattataatatagatcatgt 96  Q
    ||||||| ||||  |||||| |||||||| |||||||||||||||||||||    
T  39240870 gtattacgaaatagaccgttagattgaaacatattataatatagatcatgt 39240920  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 70 - 172
Target Start/End: Complemental strand, 28117414 - 28117313
Alignment:
Q  70 tgaaagatattataatatagatcatgtctattacatttgacattaattaaaaataatttgatatgtcgatgtcatacatcaaaagtaacttcttatgaac 169  Q
    |||||||||||||||||||||||||| ||||   |||||||||| ||   | ||||||||||||||| |||  || |||||||| |||| ||| ||||||    
T  28117414 tgaaagatattataatatagatcatg-ctatacaatttgacatttatcggatataatttgatatgtcaatgaaatgcatcaaaattaacgtctaatgaac 28117316  T
Q  170 ttt 172  Q
    |||    
T  28117315 ttt 28117313  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 116
Target Start/End: Original strand, 19527044 - 19527112
Alignment:
Q  48 attacaaaatcaaccgtttgattgaaagatattataatatagatcatgtctattacatttgacattaat 116  Q
    ||||||||||| |||||| ||||||||| |||||| | |||||||||||| |  | |||||||||||||    
T  19527044 attacaaaatccaccgttggattgaaagctattatcacatagatcatgtcaacaaaatttgacattaat 19527112  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 68 - 153
Target Start/End: Original strand, 45266697 - 45266782
Alignment:
Q  68 attgaaagatattataatatagatcatgt-ctattacatttgacattaattaaaaataatttgatatgtcgatgtcatacatcaaaa 153  Q
    ||||||||||||||||| |||||| || | |||| | |||| |||||||| ||||||||||||||||||| ||   |||||||||||    
T  45266697 attgaaagatattataacatagataattttctataa-atttaacattaataaaaaataatttgatatgtcaataagatacatcaaaa 45266782  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 47 - 115
Target Start/End: Original strand, 38947521 - 38947589
Alignment:
Q  47 tattacaaaatcaaccgtttgattgaaagatattataatatagatcatgtctattacatttgacattaa 115  Q
    |||||||||||  || ||| ||||||||||||||| || ||||||||||| ||| | |||| |||||||    
T  38947521 tattacaaaattgactgttggattgaaagatattaaaacatagatcatgtgtataaaattttacattaa 38947589  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 67 - 179
Target Start/End: Complemental strand, 11803236 - 11803124
Alignment:
Q  67 gattgaaagatattataatatagatcat-gtctattacatttgacattaattaaaaataatttgatatgtcgatgtcatacatcaaaagtaacttcttat 165  Q
    |||||| ||||||||||||||||||| | || ||| | |||||||||||||  ||||||| ||||| |||| |||  || |||||||| |||| ||||||    
T  11803236 gattgagagatattataatatagatctttgtatataaaatttgacattaatcgaaaataagttgatttgtcaatgagatgcatcaaaattaacgtcttat 11803137  T
Q  166 gaactttaaaaaac 179  Q
     || ||||||||||    
T  11803136 caa-tttaaaaaac 11803124  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 46 - 136
Target Start/End: Complemental strand, 15826546 - 15826454
Alignment:
Q  46 gtattacaaaatcaaccgtttgattgaaagatattataatatagatca--tgtctattacatttgacattaattaaaaataatttgatatgtc 136  Q
    |||||| |||||  ||| || |||||| ||||||||||||||| ||||  ||| ||| | ||||||||||||| | |||| ||||||||||||    
T  15826546 gtattataaaattgaccattggattgatagatattataatataaatcatgtgtatataaaatttgacattaatcataaattatttgatatgtc 15826454  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 46 - 136
Target Start/End: Original strand, 29141940 - 29142032
Alignment:
Q  46 gtattacaaaatcaaccgtttgattgaaagatattataatatagatc--atgtctattacatttgacattaattaaaaataatttgatatgtc 136  Q
    |||||| |||||| |  ||| |||||||| |||||||||||||| ||  || | ||| | |||||||||||||||||||| |||| |||||||    
T  29141940 gtattataaaatcgattgttggattgaaaaatattataatatagctctcatctatataaaatttgacattaattaaaaatcatttaatatgtc 29142032  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 50 - 133
Target Start/End: Original strand, 45685742 - 45685825
Alignment:
Q  50 tacaaaatcaaccgtttgattgaaagatattataatatagatcatgtctattacatttgacattaattaaaaataatttgatat 133  Q
    ||||||||| |  ||| ||||||||||| ||||||||||||| |||| ||| | |||||| |||||| | |||| |||||||||    
T  45685742 tacaaaatcgattgttagattgaaagatgttataatatagataatgtttataaaatttgatattaataagaaatcatttgatat 45685825  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 45 - 81
Target Start/End: Complemental strand, 13968209 - 13968173
Alignment:
Q  45 cgtattacaaaatcaaccgtttgattgaaagatatta 81  Q
    |||||||||||||  ||||||||||||||||||||||    
T  13968209 cgtattacaaaattgaccgtttgattgaaagatatta 13968173  T

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