View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1369_low_28 (Length: 432)
Name: NF1369_low_28
Description: NF1369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1369_low_28 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 371; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 1 - 403
Target Start/End: Complemental strand, 34314748 - 34314346
Alignment:
| Q |
1 |
ttcaaagttcaatgttattagccccatcattattaagtttgcctgatttctcattctccttatcaatgctaacaactctaatacttttaatctgatattc |
100 |
Q |
| |
|
||||||||||| || |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34314748 |
ttcaaagttcagtggtattagccccatcattattaagcttgcctgatttctcattctccttatcaatgctaacaactctaatacttttaatctgatattc |
34314649 |
T |
|
| Q |
101 |
atgggacagcttattaagtgtcaaaataagaacaccattttccaccttagccttcacagaatcaaaatcagcattctctggcaatctaagctgtctccag |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
34314648 |
atgggacagcttattaagtgtcaaaataagaacaccattttccaccttagccttcacggaatcaaaatcagcattctccggcaatctaagctgtctccag |
34314549 |
T |
|
| Q |
201 |
aattttccatacatcctttcagctctatgccaacgatcacctttcttctccacttctttcttcctttctccaatcacactcagcacgctgttccctacca |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34314548 |
aattttccatacatcctttcagctctatgccaacgatcacctttcttctccacttctttcttcctttctccaatcacactcagcacgctgttccctacca |
34314449 |
T |
|
| Q |
301 |
cttctatctttatctcatcttttctaaaccctggcacatcaatcattataacatgttcatctgaagtttccttccaatctactatagctgtcatggctga |
400 |
Q |
| |
|
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
34314448 |
cttctatcttgatctcatcttttctaaatcctggcacatcaatcattataacatgttcatctgaagtttccttccaatctactatagatgtcatggctga |
34314349 |
T |
|
| Q |
401 |
ttg |
403 |
Q |
| |
|
||| |
|
|
| T |
34314348 |
ttg |
34314346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 383
Target Start/End: Original strand, 34304489 - 34304868
Alignment:
| Q |
1 |
ttcaaagttcaatgttattagccccatcattattaagtttgcctgatttctcattctccttatcaatgctaacaactctaatacttttaatctgatattc |
100 |
Q |
| |
|
||||||| ||| ||||||||||||||||||| || | ||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||||| | |
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|
| T |
34304489 |
ttcaaagctcattgttattagccccatcattgttgaccttgggtgatttctcattctcctcatcaatgctaacaactctagtacttttaatctgat---c |
34304585 |
T |
|
| Q |
101 |
atgggacagcttattaagtgtcaaaataagaacaccattttccaccttagccttcacagaatcaaaatcagcattctctggcaatctaagctgtctccag |
200 |
Q |
| |
|
||| |||| |||||||||||||||| |||||||||||||||| | |||||||||||||||||| ||||||||||| || |||||||||| || ||||| |
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|
| T |
34304586 |
atgagacaacttattaagtgtcaaagtaagaacaccattttctatcttagccttcacagaatccaaatcagcattttcaggcaatctaaattgcctccaa |
34304685 |
T |
|
| Q |
201 |
aattttccatacatcctttcagctctatgccaacgatcacctttcttctccacttctttcttcctttctccaatcacactcagcacgctgttccctacca |
300 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| || ||| |
|
|
| T |
34304686 |
aattttccatatgatctttcagctctatgccaacgatcacctttcttctccacttctttcttcctttctccaataactctcagcacgctgttctcttcca |
34304785 |
T |
|
| Q |
301 |
cttctatctttatctcatcttttctaaaccctggcacatcaatcattataacatgttcatctgaagtttccttccaatctact |
383 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||| || ||| |||| |||||| | |||| |||||||||||| |||||| |
|
|
| T |
34304786 |
cttctatctttatctcatcttttctcaaccctggcacgtccatcgttatgacatgtccttctggagtttccttccagtctact |
34304868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 13 - 383
Target Start/End: Complemental strand, 33426570 - 33426203
Alignment:
| Q |
13 |
tgttattagccccatcattattaagtttgcctgatttctcattctccttatcaatgctaacaactctaatacttttaatctgatattcatgggacagctt |
112 |
Q |
| |
|
||||||||||| |||||| |||| |||| || |||||||||||||| ||||||||||||| |||| |||||||||||| | |||| |||| ||| |
|
|
| T |
33426570 |
tgttattagcctcatcatcgctaagcttgcttgctttctcattctcctcctcaatgctaacaagtctagtacttttaatcttac---catgtgacaactt |
33426474 |
T |
|
| Q |
113 |
attaagtgtcaaaataagaacaccattttccaccttagccttcacagaatcaaaatcagcattctctggcaatctaagctgtctccagaattttccatac |
212 |
Q |
| |
|
| |||||| ||| |||||||||||||||||| ||| ||||| || ||||| ||||||||||| || |||||||||| ||||||||| ||||||||||| |
|
|
| T |
33426473 |
acgaagtgttaaagtaagaacaccattttccatcttggccttaaccgaatccaaatcagcattttcaggcaatctaaactgtctccaaaattttccatat |
33426374 |
T |
|
| Q |
213 |
atcctttcagctctatgccaacgatcacctttcttctccacttctttcttcctttctccaatcacactcagcacgctgttccctaccacttctatcttta |
312 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||| |||||||||| |||||||||||||| ||||||||||||||| || ||||||||||||||| |
|
|
| T |
33426373 |
gatctttcagctctatgccaacgatcaccttttttctcctcttctttctttctttctccaatcactctcagcacgctgttctcttccacttctatcttta |
33426274 |
T |
|
| Q |
313 |
tctcatcttttctaaaccctggcacatcaatcattataacatgttcatctgaagtttccttccaatctact |
383 |
Q |
| |
|
||| ||||||||| ||||| ||||| || |||| |||||||||||| |||| |||||||||||| |||||| |
|
|
| T |
33426273 |
tcttatcttttctcaaccccggcacgtccatcactataacatgttcttctggagtttccttccagtctact |
33426203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 100 - 383
Target Start/End: Original strand, 34317104 - 34317387
Alignment:
| Q |
100 |
catgggacagcttattaagtgtcaaaataagaacaccattttccaccttagccttcacagaatcaaaatcagcattctctggcaatctaagctgtctcca |
199 |
Q |
| |
|
|||| |||| |||||||| ||||||| ||||||| ||||||||| |||||||| | ||||| ||||||||||||||||||||||| | ||||||||| |
|
|
| T |
34317104 |
catgcgacaacttattaaatgtcaaagtaagaactccattttccttattagccttaattgaatccaaatcagcattctctggcaatcttaactgtctcca |
34317203 |
T |
|
| Q |
200 |
gaattttccatacatcctttcagctctatgccaacgatcacctttcttctccacttctttcttcctttctccaatcacactcagcacgctgttccctacc |
299 |
Q |
| |
|
||||||||| |||| ||||||| || | ||||||||||||||||| ||||| |||||||||||||||||||||| | ||||||| || |||| || || |
|
|
| T |
34317204 |
gaattttccgtacaccctttcaactttgtgccaacgatcaccttttttctcagcttctttcttcctttctccaataattctcagcatgccgttctctgcc |
34317303 |
T |
|
| Q |
300 |
acttctatctttatctcatcttttctaaaccctggcacatcaatcattataacatgttcatctgaagtttccttccaatctact |
383 |
Q |
| |
|
||| | |||||||||||| ||||||| ||||| ||||| || |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34317304 |
actccgatctttatctcaccttttctcaaccccggcacgtccatcattataacatgttcatctgaagtttccttccaatctact |
34317387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 105 - 390
Target Start/End: Complemental strand, 34312206 - 34311921
Alignment:
| Q |
105 |
gacagcttattaagtgtcaaaataagaacaccattttccaccttagccttcacagaatcaaaatcagcattctctggcaatctaagctgtctccagaatt |
204 |
Q |
| |
|
|||| |||||||||||||||| |||| ||||||||||||| |||||||| || || || |||||| |||| ||||||||||||| || |||||||||| |
|
|
| T |
34312206 |
gacaacttattaagtgtcaaagtaagtacaccattttccattttagccttaactgagtccaaatcaacattttctggcaatctaaattgcctccagaatt |
34312107 |
T |
|
| Q |
205 |
ttccatacatcctttcagctctatgccaacgatcacctttcttctccacttctttcttcctttctccaatcacactcagcacgctgttccctaccacttc |
304 |
Q |
| |
|
||||||| |||||| |||| |||||| ||||||||| ||||| |||||||||||||||| ||| |||| |||| ||| |||||| || ||||||| |
|
|
| T |
34312106 |
ttccataagatctttcaactctgtgccaatgatcaccttgtttctcttcttctttcttcctttcaccactcactctcaacaccctgttctcttccacttc |
34312007 |
T |
|
| Q |
305 |
tatctttatctcatcttttctaaaccctggcacatcaatcattataacatgttcatctgaagtttccttccaatctactatagctg |
390 |
Q |
| |
|
||||||||||||||||||||| | ||||||||| || | ||||||||||||| | |||| |||||||||||| |||||| |||||| |
|
|
| T |
34312006 |
tatctttatctcatcttttcttatccctggcacgtcgaacattataacatgtccctctggagtttccttccagtctactctagctg |
34311921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 99 - 390
Target Start/End: Original strand, 34322759 - 34323050
Alignment:
| Q |
99 |
tcatgggacagcttattaagtgtcaaaataagaacaccattttccaccttagccttcacagaatcaaaatcagcattctctggcaatctaagctgtctcc |
198 |
Q |
| |
|
||||| |||| |||||||||||||||| |||| ||||||||||||| |||||||||||| ||||| |||||| |||| || |||||||||| || |||| |
|
|
| T |
34322759 |
tcatgtgacaacttattaagtgtcaaagtaagtacaccattttccatcttagccttcactgaatccaaatcaacattttcaggcaatctaaattgcctcc |
34322858 |
T |
|
| Q |
199 |
agaattttccatacatcctttcagctctatgccaacgatcacctttcttctccacttctttcttcctttctccaatcacactcagcacgctgttccctac |
298 |
Q |
| |
|
||||||| ||||| |||||| ||||||||||| ||||||||| ||||| |||||||||||||||| ||| |||| || | ||| || || || | |
|
|
| T |
34322859 |
agaatttcccataagatctttcaactctatgccaatgatcaccttgtttctcttcttctttcttcctttcaccactcactcttaacaccctattttcttc |
34322958 |
T |
|
| Q |
299 |
cacttctatctttatctcatcttttctaaaccctggcacatcaatcattataacatgttcatctgaagtttccttccaatctactatagctg |
390 |
Q |
| |
|
|||||||||||||||||||||||||| | |||||| ||||| | ||||||||||||| |||||| |||||||||||| |||||| |||||| |
|
|
| T |
34322959 |
aacttctatctttatctcatcttttcttatccctggaacatccaacattataacatgtccatctggagtttccttccagtctactctagctg |
34323050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 130; Significance: 3e-67; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 127 - 403
Target Start/End: Original strand, 25651248 - 25651525
Alignment:
| Q |
127 |
taagaacaccattttccaccttagccttcacagaatcaaaatcagcattctctggcaatctaagctgtctccagaattttccatacatcctttcagctct |
226 |
Q |
| |
|
|||||||||||| ||||| ||| | ||| | ||||| |||||| |||| ||||| |||||||| |||||||||||||||||| ||||||||||| |||| |
|
|
| T |
25651248 |
taagaacaccatcttccatctttgtcttaatcgaatccaaatcaacattttctggtaatctaagttgtctccagaattttccacacatcctttcaactct |
25651347 |
T |
|
| Q |
227 |
atgccaacgatcacctttcttctccacttctttcttcctttctccaatcacactcagcacgctgttc-cctaccacttctatctttatctcatcttttct |
325 |
Q |
| |
|
|||||||||||||| ||| |||||| |||||| |||||||||||||| || || |||||||||||| | | ||||| ||||| |||||||||||||||| |
|
|
| T |
25651348 |
atgccaacgatcacttttgttctcctgttcttttttcctttctccaataactcttagcacgctgttctctttccactcctatccttatctcatcttttct |
25651447 |
T |
|
| Q |
326 |
aaaccctggcacatcaatcattataacatgttcatctgaagtttccttccaatctactatagctgtcatggctgattg |
403 |
Q |
| |
|
|||| ||| | ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
25651448 |
caacctcaccacgcccatcattataacatgttcatctgaagtttccttccaatctactatatctgtcatggctgattg |
25651525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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