View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1369_low_3 (Length: 674)

Name: NF1369_low_3
Description: NF1369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1369_low_3
NF1369_low_3
[»] chr1 (6 HSPs)
chr1 (209-346)||(52140746-52140883)
chr1 (30-212)||(52140541-52140714)
chr1 (30-164)||(52130943-52131077)
chr1 (448-509)||(6923510-6923571)
chr1 (352-395)||(52140901-52140944)
chr1 (247-279)||(52131249-52131281)
[»] chr8 (4 HSPs)
chr8 (30-212)||(17525002-17525175)
chr8 (221-323)||(17524854-17524955)
chr8 (327-451)||(17524437-17524571)
chr8 (449-486)||(16367881-16367918)
[»] chr4 (2 HSPs)
chr4 (465-673)||(37615638-37615847)
chr4 (450-486)||(17558824-17558860)
[»] chr6 (1 HSPs)
chr6 (526-673)||(22083598-22083733)
[»] chr3 (2 HSPs)
chr3 (446-487)||(52130754-52130795)
chr3 (450-486)||(5561552-5561588)
[»] chr7 (1 HSPs)
chr7 (451-487)||(24763319-24763355)


Alignment Details
Target: chr1 (Bit Score: 134; Significance: 2e-69; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 209 - 346
Target Start/End: Original strand, 52140746 - 52140883
Alignment:
Q  209 tagtggaagatgtatagaaaattgtaaaagtaagtttggtatttattacttagagattggaaattggaatgtatgaagtaccagtggccacggtattgct 308  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52140746 tagtggaagatgtatagaaaattgtaaaagtaagcttggtatttattacttagagattggaaattggaatgtatgaagtaccagtggccacggtattgct 52140845  T
Q  309 aatttaattcgatgtatttatgtacaaacagttgccac 346  Q
    ||||||||||||||||||||||||||||||||||||||    
T  52140846 aatttaattcgatgtatttatgtacaaacagttgccac 52140883  T

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Target: chr1; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 30 - 212
Target Start/End: Original strand, 52140541 - 52140714
Alignment:
Q  30 ccttacaacagtaccaaaagacaaacgaaacatgtttaagagagagtctatggcggctttggatgcttcagcgaatagaactttgttttgctttttgtca 129  Q
    |||||||||||||||||||||||| |||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  52140541 ccttacaacagtaccaaaagacaagcgaaacatgtttaagagagagtttatggcagctttggatgcttcagcgaatagaactttgttttgctttttgtca 52140640  T
Q  130 aacagaagcttaagggtcactttggttgaagaagatgaagaagaagccatattgaaagataatgcattaacagagaggctagt 212  Q
    | ||||||||||||||| ||||||||         ||||||||||||||||||||||||||||||||||||||||||||||||    
T  52140641 accagaagcttaagggttactttggt---------tgaagaagaagccatattgaaagataatgcattaacagagaggctagt 52140714  T

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Target: chr1; HSP #3
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 30 - 164
Target Start/End: Original strand, 52130943 - 52131077
Alignment:
Q  30 ccttacaacagtaccaaaagacaaacgaaacatgtttaagagagagtctatggcggctttggatgcttcagcgaatagaactttgttttgctttttgtca 129  Q
    ||||| ||| || |||||||||||  |||||||||||||||||||||||| ||| ||||| |||||||| || || |||||||||||||||||| |||||    
T  52130943 ccttaaaactgtgccaaaagacaagtgaaacatgtttaagagagagtctacggcagcttttgatgcttctgcaaacagaactttgttttgctttgtgtca 52131042  T
Q  130 aacagaagcttaagggtcactttggttgaagaaga 164  Q
    | | ||||||||||||||| |||||| ||||||||    
T  52131043 accggaagcttaagggtcattttggtggaagaaga 52131077  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 448 - 509
Target Start/End: Complemental strand, 6923571 - 6923510
Alignment:
Q  448 taaactagattgtctacccgtgctgccgcatgggtcataatttgctaaaaatattagttgaa 509  Q
    |||||||||| |||||||||||| || ||| ||||||||  | |||||||||||||||||||    
T  6923571 taaactagatcgtctacccgtgcagcagcacgggtcatatatagctaaaaatattagttgaa 6923510  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 352 - 395
Target Start/End: Original strand, 52140901 - 52140944
Alignment:
Q  352 agcttgattttgagttctcttatcctcctctgcaattggccaac 395  Q
    ||||| ||||||||||||||||  ||||||||||||||||||||    
T  52140901 agcttaattttgagttctcttaatctcctctgcaattggccaac 52140944  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 247 - 279
Target Start/End: Original strand, 52131249 - 52131281
Alignment:
Q  247 gtatttattacttagagattggaaattggaatg 279  Q
    |||||||||||| ||||||||||||||||||||    
T  52131249 gtatttattactaagagattggaaattggaatg 52131281  T

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Target: chr8 (Bit Score: 107; Significance: 3e-53; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 30 - 212
Target Start/End: Complemental strand, 17525175 - 17525002
Alignment:
Q  30 ccttacaacagtaccaaaagacaaacgaaacatgtttaagagagagtctatggcggctttggatgcttcagcgaatagaactttgttttgctttttgtca 129  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  |||| ||| || || | |||||||||||||||| |||||    
T  17525175 ccttacaacagtaccaaaagacaaacgaaacatgtttaagagagagtctatggcagcttgtgatgattcggcaaacataactttgttttgctttgtgtca 17525076  T
Q  130 aacagaagcttaagggtcactttggttgaagaagatgaagaagaagccatattgaaagataatgcattaacagagaggctagt 212  Q
    | ||||||| |||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||    
T  17525075 accagaagcctaagggtcactttggttgaag---------aagaagccatattgaaagataatgcattaacagagaggctagt 17525002  T

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Target: chr8; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 221 - 323
Target Start/End: Complemental strand, 17524955 - 17524854
Alignment:
Q  221 tatagaaaattgtaaaagtaagtttggtatttattacttagagattggaaattggaatgtatgaagtaccagtggccacggtattgctaatttaattcga 320  Q
    ||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||||||||||||||||    
T  17524955 tatagaaaattgtaaaagtaactt-ggtatttattacttagagattggaaattggaatgtatgaagtcctactggccacggtattgctaatttaattcga 17524857  T
Q  321 tgt 323  Q
    |||    
T  17524856 tgt 17524854  T

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Target: chr8; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 327 - 451
Target Start/End: Complemental strand, 17524571 - 17524437
Alignment:
Q  327 tatgtacaaacagttgccacttacgag---------cttgattttgagttctcttatcctcctctgcaattggccaa-catttgagcaagagaaacttgg 416  Q
    |||||||||||||||||||||||||||         ||| ||||||||||||||||  ||||||||||||||||||| |||| |||||||||||||||||    
T  17524571 tatgtacaaacagttgccacttacgagtaattaaagcttaattttgagttctcttaatctcctctgcaattggccaaacattggagcaagagaaacttgg 17524472  T
Q  417 tagaataccgcgatggttcacacaaatttgttaaa 451  Q
    |||| |||||||||| ||||||||||||| |||||    
T  17524471 tagagtaccgcgatgtttcacacaaatttcttaaa 17524437  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 449 - 486
Target Start/End: Complemental strand, 16367918 - 16367881
Alignment:
Q  449 aaactagattgtctacccgtgctgccgcatgggtcata 486  Q
    ||||||||| ||||||||||||||||||| ||||||||    
T  16367918 aaactagatcgtctacccgtgctgccgcacgggtcata 16367881  T

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Target: chr4 (Bit Score: 88; Significance: 6e-42; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 465 - 673
Target Start/End: Original strand, 37615638 - 37615847
Alignment:
Q  465 ccgtgctgccgcatgggtcataatttgctaaaaatattagttgaaagcaatc---atatatccgataaaattaatatatagttactcaatgtaccaaatt 561  Q
    ||||||||| ||| |||||||||||| |||||| |||||||||||||| ||    |||||||| |||||||||||||||||||||||||| |||  ||||    
T  37615638 ccgtgctgctgcacgggtcataatttactaaaactattagttgaaagccattgttatatatccaataaaattaatatatagttactcaatatactgaatt 37615737  T
Q  562 gttctgactaaatgcgattaattaattgacgtatgatcatcttacataggttaaaaaattat--agatatgatagacatacataaccataattgtccggc 659  Q
    ||||||||  |||||||||||||    |||||| |||| ||||||||||||||||||| |    |||||||| ||||||||||| |||||||||| ||||    
T  37615738 gttctgacgtaatgcgattaatt----gacgtacgatcgtcttacataggttaaaaaaattcgaagatatgagagacatacatagccataattgttcggc 37615833  T
Q  660 ctatgctactccac 673  Q
    ||||| ||||||||    
T  37615834 ctatgttactccac 37615847  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 450 - 486
Target Start/End: Original strand, 17558824 - 17558860
Alignment:
Q  450 aactagattgtctacccgtgctgccgcatgggtcata 486  Q
    |||||||| ||||||||||||||||||| ||||||||    
T  17558824 aactagatcgtctacccgtgctgccgcacgggtcata 17558860  T

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Target: chr6 (Bit Score: 46; Significance: 7e-17; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 526 - 673
Target Start/End: Complemental strand, 22083733 - 22083598
Alignment:
Q  526 ataaaattaatatatagttactcaatgtaccaaattgttctgactaaatgcgattaattaattgacgtatgatcatcttacataggttaaaaaattatag 625  Q
    |||||||||| |||||||||||||||||||  ||||||||||||  |||||||||    |||| |||||||||| ||||||||||||  |        ||    
T  22083733 ataaaattaagatatagttactcaatgtactgaattgttctgacgtaatgcgatt----aattcacgtatgatcgtcttacataggtcga--------ag 22083646  T
Q  626 atatgatagacatacataaccataattgtccggcctatgctactccac 673  Q
    |||||| ||||||||||| |||||| ||| ||||||||| ||||||||    
T  22083645 atatgagagacatacatagccataactgttcggcctatgttactccac 22083598  T

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Target: chr3 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 446 - 487
Target Start/End: Complemental strand, 52130795 - 52130754
Alignment:
Q  446 gttaaactagattgtctacccgtgctgccgcatgggtcataa 487  Q
    |||| ||||||||||||||||||||||||||| |||||||||    
T  52130795 gttagactagattgtctacccgtgctgccgcacgggtcataa 52130754  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 450 - 486
Target Start/End: Original strand, 5561552 - 5561588
Alignment:
Q  450 aactagattgtctacccgtgctgccgcatgggtcata 486  Q
    |||||||| ||||||||||||||||||| ||||||||    
T  5561552 aactagatcgtctacccgtgctgccgcacgggtcata 5561588  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 451 - 487
Target Start/End: Complemental strand, 24763355 - 24763319
Alignment:
Q  451 actagattgtctacccgtgctgccgcatgggtcataa 487  Q
    ||||||||||||||||||||||||||| |||||||||    
T  24763355 actagattgtctacccgtgctgccgcacgggtcataa 24763319  T

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