View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1369_low_37 (Length: 385)
Name: NF1369_low_37
Description: NF1369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1369_low_37 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 28 - 385
Target Start/End: Complemental strand, 46380948 - 46380594
Alignment:
| Q |
28 |
cacatacaacactgcatgcgcaccattgggtggccaacaactgttcattaaattaacaattttgtttgcattttctagcatgcaaagtttaatacaatga |
127 |
Q |
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| T |
46380948 |
cacatacaacactgcatgcgcaccattgggcggccaacaactgttcattaaattaacaattttgtttgcattttctagcatgcaaagtttaatacaatga |
46380849 |
T |
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| Q |
128 |
caaattatgttcgccaacctgatattctgcttcaacaggaatgcaatctagggaatacggctgctgcagacgagctattatgcgatcctgccaaattgta |
227 |
Q |
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| T |
46380848 |
caaattatgttcgccaacctgatatcctgcttcaacaggaatgcaatctagggaatacggctgctgcagacgagctattatgcgatcctgccaaattgta |
46380749 |
T |
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| Q |
228 |
gcgatgaaatattatttgaaaagtacataataagttgtctagctagtttgctgtnnnnnnnttggcttgttatatgaa-aaccaaatcactagaacacca |
326 |
Q |
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| T |
46380748 |
gcgatgaaatattatttgaaaagtacataataagttgtctagc----ttgctgtaaaaaaattggcttgttatatgaataaccaaatcactagaacacca |
46380653 |
T |
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| Q |
327 |
atgctaaggtaggaactatttaacgaggaaagcaaacaagaggagaagaaaatgtaaaa |
385 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46380652 |
atgccaaggtaggaactatttaacgaggaaagcaaacaagaggagaagaaaatgtaaaa |
46380594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 79; Significance: 8e-37; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 122 - 224
Target Start/End: Complemental strand, 25756006 - 25755904
Alignment:
| Q |
122 |
caatgacaaattatgttcgccaacctgatattctgcttcaacaggaatgcaatctagggaatacggctgctgcagacgagctattatgcgatcctgccaa |
221 |
Q |
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|||| ||||| ||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||| |
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| T |
25756006 |
caataacaaactatgttcaccaacctgatattctgcttcaacaggaatgcaatccagggaatatggctgctgcagacgagcaattatgcgatcctgccaa |
25755907 |
T |
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| Q |
222 |
att |
224 |
Q |
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||| |
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| T |
25755906 |
att |
25755904 |
T |
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