View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1369_low_38 (Length: 384)

Name: NF1369_low_38
Description: NF1369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1369_low_38
NF1369_low_38
[»] chr1 (7 HSPs)
chr1 (31-323)||(14763738-14764027)
chr1 (195-275)||(39238872-39238952)
chr1 (176-276)||(46295862-46295962)
chr1 (166-275)||(8001739-8001848)
chr1 (324-362)||(14763738-14763778)
chr1 (166-222)||(26829504-26829560)
chr1 (204-252)||(29054107-29054155)
[»] chr3 (5 HSPs)
chr3 (167-275)||(28709558-28709666)
chr3 (166-244)||(29032424-29032502)
chr3 (167-271)||(48338826-48338930)
chr3 (166-261)||(27639508-27639603)
chr3 (187-221)||(24344864-24344898)
[»] chr2 (7 HSPs)
chr2 (167-254)||(43131772-43131859)
chr2 (167-260)||(4978759-4978852)
chr2 (167-260)||(4996667-4996760)
chr2 (179-244)||(18717875-18717940)
chr2 (186-261)||(38193685-38193760)
chr2 (167-233)||(9021486-9021552)
chr2 (187-261)||(23453378-23453452)
[»] chr8 (6 HSPs)
chr8 (167-261)||(11150936-11151029)
chr8 (166-244)||(1342334-1342411)
chr8 (179-261)||(43917612-43917694)
chr8 (187-244)||(3137433-3137490)
chr8 (187-223)||(37564783-37564819)
chr8 (176-276)||(44648929-44649029)
[»] chr7 (9 HSPs)
chr7 (167-261)||(37928313-37928407)
chr7 (176-244)||(34993151-34993219)
chr7 (176-222)||(23317843-23317889)
chr7 (167-222)||(8746149-8746204)
chr7 (166-261)||(8896604-8896699)
chr7 (187-222)||(11740406-11740441)
chr7 (180-264)||(12810150-12810234)
chr7 (167-222)||(23142697-23142753)
chr7 (187-239)||(41760367-41760419)
[»] chr5 (7 HSPs)
chr5 (167-277)||(1920736-1920846)
chr5 (176-269)||(36482073-36482166)
chr5 (176-221)||(14044726-14044771)
chr5 (176-271)||(30293819-30293914)
chr5 (214-260)||(8405821-8405867)
chr5 (186-250)||(2089133-2089197)
chr5 (167-239)||(30840626-30840697)
[»] chr6 (4 HSPs)
chr6 (167-244)||(10008206-10008283)
chr6 (167-252)||(33121326-33121411)
chr6 (176-244)||(18493265-18493333)
chr6 (179-220)||(27082336-27082377)
[»] chr4 (4 HSPs)
chr4 (167-269)||(20775085-20775187)
chr4 (167-222)||(27284085-27284140)
chr4 (176-261)||(2565417-2565502)
chr4 (179-276)||(41142285-41142382)


Alignment Details
Target: chr1 (Bit Score: 145; Significance: 3e-76; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 31 - 323
Target Start/End: Complemental strand, 14764027 - 14763738
Alignment:
Q  31 gaactgactagaatatttcaacgacaattaactaccgtttactatggatcggtagttaataatcattggaactcatttatatgtaagaacaatacnnnnn 130  Q
    |||| |||||||||| | |||||| |||||| |||||||||||||||||| |||||||||| || ||||||||||||||||||||||||||||||         
T  14764027 gaaccgactagaatactccaacgataattaattaccgtttactatggatcagtagttaatactcgttggaactcatttatatgtaagaacaatacttttt 14763928  T
Q  131 nnnaaggaatttaagaattgtagttattagcaatataaaataagaaagttttcataaaaaagtggtgtaataattatttgatcaaaagtaaccacttaca 230  Q
       |||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |   ||||||||||||||||||||||||  ||||     
T  14763927 tt-aaggaatttaagaattgtagttattagcaatacaaaacaagaaagttttcataaaaaagtgat---ataattatttgatcaaaagtaaccgtttacg 14763832  T
Q  231 tttttaagataaaaattttattcatagattcattgaccaatgccccataaacacttgttaacaagacctatatac--gtgtaatgttgtggaggc 323  Q
    |||  ||||| |||||||||||||| |||||||||||||||||  |  ||||| |||||||||||||||||||||  ||||||||||||||||||    
T  14763831 tttagaagat-aaaattttattcatggattcattgaccaatgcttcggaaacatttgttaacaagacctatatacgtgtgtaatgttgtggaggc 14763738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 195 - 275
Target Start/End: Original strand, 39238872 - 39238952
Alignment:
Q  195 gtgtaataattatttgatcaaaagtaaccacttacatttttaagataaaaattttattcatagattcattgaccaatgccc 275  Q
    ||||||| |||| ||||||||| ||||| |||||||||||||||| |||| ||||||| || ||||| || ||||||||||    
T  39238872 gtgtaatcattacttgatcaaatgtaacaacttacatttttaagagaaaatttttatttatggattccttaaccaatgccc 39238952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 176 - 276
Target Start/End: Complemental strand, 46295962 - 46295862
Alignment:
Q  176 aagttttcataaaaaagtggtgtaataattatttgatcaaaagtaaccacttacatttttaagataaaaattttattcatagattcattgaccaatgccc 275  Q
    ||||||| || ||||||| |||| || |||| |||||||||||||||   ||| ||||| ||||||||| |||||||  ||||||| || |||| |||||    
T  46295962 aagtttttatgaaaaagttgtgtcatgattacttgatcaaaagtaacattttatattttcaagataaaatttttatttgtagattccttaaccattgccc 46295863  T
Q  276 c 276  Q
    |    
T  46295862 c 46295862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 275
Target Start/End: Complemental strand, 8001848 - 8001739
Alignment:
Q  166 taaaataagaaagttttcataaaaaagtggtgtaataattatttgatcaaaagtaaccacttacatttttaagataaaaattttattcatagattcattg 265  Q
    ||||| ||| || |||||||  |||||| ||||||| |||| || ||||||||||||  |||| ||||| ||||||||| || ||||  ||||||| ||     
T  8001848 taaaacaagtaaattttcatgtaaaagttgtgtaatcattactttatcaaaagtaacatcttatattttcaagataaaatttctatttctagattcctta 8001749  T
Q  266 accaatgccc 275  Q
    |||| |||||    
T  8001748 accattgccc 8001739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 324 - 362
Target Start/End: Complemental strand, 14763778 - 14763738
Alignment:
Q  324 ttgttaacaagacctatatac--gtgtaatgttgtggaggc 362  Q
    |||||||||||||||||||||  ||||||||||||||||||    
T  14763778 ttgttaacaagacctatatacgtgtgtaatgttgtggaggc 14763738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 166 - 222
Target Start/End: Original strand, 26829504 - 26829560
Alignment:
Q  166 taaaataagaaagttttcataaaaaagtggtgtaataattatttgatcaaaagtaac 222  Q
    ||||||||| || ||||||| ||||||| ||||||| |||| || ||||||||||||    
T  26829504 taaaataagtaaattttcatgaaaaagttgtgtaatcattactttatcaaaagtaac 26829560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 204 - 252
Target Start/End: Complemental strand, 29054155 - 29054107
Alignment:
Q  204 ttatttgatcaaaagtaaccacttacatttttaagataaaaattttatt 252  Q
    |||||||||||||| |||| | ||| ||||||||||||||| |||||||    
T  29054155 ttatttgatcaaaaataactatttatatttttaagataaaatttttatt 29054107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 167 - 275
Target Start/End: Complemental strand, 28709666 - 28709558
Alignment:
Q  167 aaaataagaaagttttcataaaaaagtggtgtaataattatttgatcaaaagtaaccacttacatttttaagataaaaattttattcatagattcattga 266  Q
    |||||||| ||||||  |||||||||| || |||| ||||||||||||||||||||   ||| ||||| ||||||||| || |||| |||||||| || |    
T  28709666 aaaataagtaagtttctataaaaaagttgtataatcattatttgatcaaaagtaacattttatattttcaagataaaatttctatttatagattctttaa 28709567  T
Q  267 ccaatgccc 275  Q
    ||| |||||    
T  28709566 ccattgccc 28709558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 166 - 244
Target Start/End: Original strand, 29032424 - 29032502
Alignment:
Q  166 taaaataagaaagttttcataaaaaagtggtgtaataattatttgatcaaaagtaaccacttacatttttaagataaaa 244  Q
    ||||| ||| ||||||| || ||||||| ||||||| |||| |||||||||||||||  |||| |||||||||| ||||    
T  29032424 taaaacaagcaagtttttatgaaaaagttgtgtaatcattacttgatcaaaagtaacatcttatatttttaagacaaaa 29032502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 167 - 271
Target Start/End: Original strand, 48338826 - 48338930
Alignment:
Q  167 aaaataagaaagttttcataaaaaagtggtgtaataattatttgatcaaaagtaaccacttacatttttaagataaaaattttattcatagattcattga 266  Q
    |||| ||| ||||||| |||||||||| |||||||||||| || ||||||| ||||  |||| ||||  ||||||||| || |||| ||| |||| || |    
T  48338826 aaaacaagtaagtttttataaaaaagttgtgtaataattactttatcaaaaataacatcttatatttccaagataaaatttctatttataaattctttaa 48338925  T
Q  267 ccaat 271  Q
    |||||    
T  48338926 ccaat 48338930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 166 - 261
Target Start/End: Original strand, 27639508 - 27639603
Alignment:
Q  166 taaaataagaaagttttcataaaaaagtggtgtaataattatttgatcaaaagtaaccacttacatttttaagataaaaattttattcatagattc 261  Q
    ||||| ||||||||||||| ||| ||||| ||||| ||||||||  ||||||||||   |||| ||||  ||||||||| || ||||||| |||||    
T  27639508 taaaacaagaaagttttcacaaataagtgatgtaacaattatttagtcaaaagtaatatcttatatttcgaagataaaatttctattcatggattc 27639603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 187 - 221
Target Start/End: Original strand, 24344864 - 24344898
Alignment:
Q  187 aaaaagtggtgtaataattatttgatcaaaagtaa 221  Q
    ||||||| |||||||||||||||||||||||||||    
T  24344864 aaaaagttgtgtaataattatttgatcaaaagtaa 24344898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 167 - 254
Target Start/End: Complemental strand, 43131859 - 43131772
Alignment:
Q  167 aaaataagaaagttttcataaaaaagtggtgtaataattatttgatcaaaagtaaccacttacatttttaagataaaaattttattca 254  Q
    |||| ||| ||||||| ||||||| || ||||||| |||| |||||||||||||   |||||||||||||||| |||| |||||||||    
T  43131859 aaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagtataaacttacatttttaagacaaaatttttattca 43131772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 167 - 260
Target Start/End: Complemental strand, 4978852 - 4978759
Alignment:
Q  167 aaaataagaaagttttcataaaaaagtggtgtaataattatttgatcaaaagtaaccacttacatttttaagataaaaattttattcatagatt 260  Q
    |||||||  ||||||| ||||||| || ||||||| |||| |||||||||||||||  |||| ||||| |||| |||| || |||| |||||||    
T  4978852 aaaataaataagtttttataaaaatgttgtgtaatcattacttgatcaaaagtaacatcttatattttcaagacaaaacttctattaatagatt 4978759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 167 - 260
Target Start/End: Complemental strand, 4996760 - 4996667
Alignment:
Q  167 aaaataagaaagttttcataaaaaagtggtgtaataattatttgatcaaaagtaaccacttacatttttaagataaaaattttattcatagatt 260  Q
    |||||||  ||||||| ||||||| || ||||||| |||| |||||||||||||||  |||| ||||| |||| |||| || |||| |||||||    
T  4996760 aaaataaataagtttttataaaaatgttgtgtaatcattacttgatcaaaagtaacatcttatattttcaagacaaaacttctattaatagatt 4996667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 179 - 244
Target Start/End: Original strand, 18717875 - 18717940
Alignment:
Q  179 ttttcataaaaaagtggtgtaataattatttgatcaaaagtaaccacttacatttttaagataaaa 244  Q
    ||||||| ||||||| ||||||| |||| |||||||||||||||  |||| |||||||| ||||||    
T  18717875 ttttcatgaaaaagttgtgtaatcattacttgatcaaaagtaacatcttatatttttaaaataaaa 18717940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 186 - 261
Target Start/End: Complemental strand, 38193760 - 38193685
Alignment:
Q  186 aaaaaagtggtgtaataattatttgatcaaaagtaaccacttacatttttaagataaaaattttattcatagattc 261  Q
    |||||||| ||||||| ||||||| ||||||| |||  |||||||||||||| |||||| || |||| | ||||||    
T  38193760 aaaaaagtagtgtaattattatttcatcaaaaataaaaacttacatttttaaaataaaatttctattaaaagattc 38193685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 167 - 233
Target Start/End: Original strand, 9021486 - 9021552
Alignment:
Q  167 aaaataagaaagttttcataaaaaagtggtgtaataattatttgatcaaaagtaaccacttacattt 233  Q
    |||||||||||||||||| |||||| | ||||||| |||||||  |||||| ||||  |||||||||    
T  9021486 aaaataagaaagttttcacaaaaaaatagtgtaatcattatttagtcaaaaataacatcttacattt 9021552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 187 - 261
Target Start/End: Original strand, 23453378 - 23453452
Alignment:
Q  187 aaaaagtggtgtaataattatttgatcaaaagtaaccacttacatttttaagataaaaattttattcatagattc 261  Q
    ||||||| |||||||  |||||||||||||||||||  |||| ||||| |||| |||| |||||||  |||||||    
T  23453378 aaaaagttgtgtaatctttatttgatcaaaagtaacatcttatattttcaagacaaaatttttatttgtagattc 23453452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 167 - 261
Target Start/End: Original strand, 11150936 - 11151029
Alignment:
Q  167 aaaataagaaagttttcataaaaaagtggtgtaataattatttgatcaaaagtaaccacttacatttttaagataaaaattttattcatagattc 261  Q
    |||||||| ||||||| | |||||| || |||||| ||||||||||||||||||||  |||| |||| ||||| ||||||||||||  |||||||    
T  11150936 aaaataagtaagtttttaaaaaaaattg-tgtaatcattatttgatcaaaagtaacatcttatatttctaagacaaaaattttatttgtagattc 11151029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 166 - 244
Target Start/End: Original strand, 1342334 - 1342411
Alignment:
Q  166 taaaataagaaagttttcataaaaaagtggtgtaataattatttgatcaaaagtaaccacttacatttttaagataaaa 244  Q
    ||||||||| |||||||||||||||||| ||||||| ||| ||| ||||||||||||  |||| ||||  |||||||||    
T  1342334 taaaataagtaagttttcataaaaaagttgtgtaatcattgttt-atcaaaagtaacatcttatatttccaagataaaa 1342411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 261
Target Start/End: Original strand, 43917612 - 43917694
Alignment:
Q  179 ttttcataaaaaagtggtgtaataattatttgatcaaaagtaaccacttacatttttaagataaaaattttattcatagattc 261  Q
    |||| |||||||| | ||||||| |||||||||| |||||||||  |||| ||||| |||| ||||||||||||  |||||||    
T  43917612 tttttataaaaaaattgtgtaattattatttgattaaaagtaacgccttatattttcaagacaaaaattttatttgtagattc 43917694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 187 - 244
Target Start/End: Original strand, 3137433 - 3137490
Alignment:
Q  187 aaaaagtggtgtaataattatttgatcaaaagtaaccacttacatttttaagataaaa 244  Q
    ||||||| |||||||||||| |||||||||||||||  |||||||||| |||| ||||    
T  3137433 aaaaagttgtgtaataattacttgatcaaaagtaacatcttacattttcaagacaaaa 3137490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 187 - 223
Target Start/End: Original strand, 37564783 - 37564819
Alignment:
Q  187 aaaaagtggtgtaataattatttgatcaaaagtaacc 223  Q
    |||||||||||||||||||| ||| ||||||||||||    
T  37564783 aaaaagtggtgtaataattaattggtcaaaagtaacc 37564819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 176 - 276
Target Start/End: Complemental strand, 44649029 - 44648929
Alignment:
Q  176 aagttttcataaaaaagtggtgtaataattatttgatcaaaagtaaccacttacatttttaagataaaaattttattcatagattcattgaccaatgccc 275  Q
    |||||||||| ||||||| ||||||| |||| || ||||||||||||   ||| ||||| |||| |||| || ||||  ||||||| || |||| |||||    
T  44649029 aagttttcatgaaaaagttgtgtaatcattactttatcaaaagtaacattttatattttcaagacaaaatttctatttgtagattccttaaccattgccc 44648930  T
Q  276 c 276  Q
    |    
T  44648929 c 44648929  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 167 - 261
Target Start/End: Original strand, 37928313 - 37928407
Alignment:
Q  167 aaaataagaaagttttcataaaaaagtggtgtaataattatttgatcaaaagtaaccacttacatttttaagataaaaattttattcatagattc 261  Q
    |||||||| ||||||| |||||||||| |||||||||||| || ||||||| ||||   ||| ||||| ||||||||| || |||| ||||||||    
T  37928313 aaaataagtaagtttttataaaaaagttgtgtaataattactttatcaaaaataacattttatattttcaagataaaatttatatttatagattc 37928407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 176 - 244
Target Start/End: Complemental strand, 34993219 - 34993151
Alignment:
Q  176 aagttttcataaaaaagtggtgtaataattatttgatcaaaagtaaccacttacatttttaagataaaa 244  Q
    |||||||||| ||||||| ||||||| ||||||| ||||||||||||  |||| |||||||||| ||||    
T  34993219 aagttttcatgaaaaagttgtgtaattattattttatcaaaagtaacatcttatatttttaagacaaaa 34993151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 176 - 222
Target Start/End: Complemental strand, 23317889 - 23317843
Alignment:
Q  176 aagttttcataaaaaagtggtgtaataattatttgatcaaaagtaac 222  Q
    |||||||||||||||||||||||||| || | |||||||||||||||    
T  23317889 aagttttcataaaaaagtggtgtaatcataacttgatcaaaagtaac 23317843  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 167 - 222
Target Start/End: Original strand, 8746149 - 8746204
Alignment:
Q  167 aaaataagaaagttttcataaaaaagtggtgtaataattatttgatcaaaagtaac 222  Q
    |||||||| ||||||| || ||||||| || |||| ||||||||||||||||||||    
T  8746149 aaaataagtaagtttttatgaaaaagttgtataatcattatttgatcaaaagtaac 8746204  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 166 - 261
Target Start/End: Complemental strand, 8896699 - 8896604
Alignment:
Q  166 taaaataagaaagttttcataaaaaagtggtgtaataattatttgatcaaaagtaaccacttacatttttaagataaaaattttattcatagattc 261  Q
    ||||| ||| |||||||||| ||||| | ||||||| ||||  ||||||||||||||  |||| |||||||||| |||| || ||||  |||||||    
T  8896699 taaaacaagtaagttttcatgaaaaaattgtgtaatcattacctgatcaaaagtaacatcttatatttttaagacaaaatttatatttgtagattc 8896604  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 187 - 222
Target Start/End: Complemental strand, 11740441 - 11740406
Alignment:
Q  187 aaaaagtggtgtaataattatttgatcaaaagtaac 222  Q
    |||||||||||||||||||| |||||||||||||||    
T  11740441 aaaaagtggtgtaataattagttgatcaaaagtaac 11740406  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 180 - 264
Target Start/End: Complemental strand, 12810234 - 12810150
Alignment:
Q  180 tttcataaaaaagtggtgtaataattatttgatcaaaagtaaccacttacatttttaagataaaaattttattcatagattcatt 264  Q
    |||||| ||||||| ||||||| |||| ||  ||||||||||   |||| |||||||||| |||| ||| ||| |||||||||||    
T  12810234 tttcatgaaaaagttgtgtaattattactttgtcaaaagtaatatcttatatttttaagacaaaattttcatttatagattcatt 12810150  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 167 - 222
Target Start/End: Complemental strand, 23142753 - 23142697
Alignment:
Q  167 aaaataagaaagttttcat-aaaaaagtggtgtaataattatttgatcaaaagtaac 222  Q
    |||||||| ||||||| || |||||||| |||||||||||| |||||||||| ||||    
T  23142753 aaaataagtaagtttttatgaaaaaagttgtgtaataattacttgatcaaaaataac 23142697  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 187 - 239
Target Start/End: Complemental strand, 41760419 - 41760367
Alignment:
Q  187 aaaaagtggtgtaataattatttgatcaaaagtaaccacttacatttttaaga 239  Q
    ||||||| |||||||||||| ||||| |||| |||  ||||||||||||||||    
T  41760419 aaaaagttgtgtaataattacttgataaaaaataaaaacttacatttttaaga 41760367  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 167 - 277
Target Start/End: Complemental strand, 1920846 - 1920736
Alignment:
Q  167 aaaataagaaagttttcataaaaaagtggtgtaataattatttgatcaaaagtaaccacttacatttttaagataaaaattttattcatagattcattga 266  Q
    |||| ||||||||||||| |||||| || ||| || |||||||| |||||||||||  |||| |||| ||||| |||| || ||||||||||||  || |    
T  1920846 aaaagaagaaagttttcacaaaaaaatgatgtcatcattatttggtcaaaagtaacaccttatatttctaagacaaaatttctattcatagatttcttaa 1920747  T
Q  267 ccaatgcccca 277  Q
    ||||| |||||    
T  1920746 ccaatacccca 1920736  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 176 - 269
Target Start/End: Original strand, 36482073 - 36482166
Alignment:
Q  176 aagttttcataaaaaagtggtgtaataattatttgatcaaaagtaaccacttacatttttaagataaaaattttattcatagattcattgacca 269  Q
    |||||||||||||||||| ||||||  ||||||||||||||||||||  |||| ||||| || | |||| || ||||  |||||||||| ||||    
T  36482073 aagttttcataaaaaagttgtgtaaacattatttgatcaaaagtaacatcttatattttcaaaacaaaatttctatttgtagattcattaacca 36482166  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 176 - 221
Target Start/End: Complemental strand, 14044771 - 14044726
Alignment:
Q  176 aagttttcataaaaaagtggtgtaataattatttgatcaaaagtaa 221  Q
    ||||||| |||||||||| |||||||||||| ||||||||||||||    
T  14044771 aagtttttataaaaaagttgtgtaataattacttgatcaaaagtaa 14044726  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 176 - 271
Target Start/End: Complemental strand, 30293914 - 30293819
Alignment:
Q  176 aagttttcataaaaaagtggtgtaataattatttgatcaaaagtaaccacttacatttttaagataaaaattttattcatagattcattgaccaat 271  Q
    |||||||||| ||||| |  |||||| |||| |||||||||||||||  |||| |||||||||| |||| || ||||  ||||||| || ||||||    
T  30293914 aagttttcatgaaaaaattatgtaatcattacttgatcaaaagtaacatcttatatttttaagacaaaatttctatttgtagattctttaaccaat 30293819  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 214 - 260
Target Start/End: Original strand, 8405821 - 8405867
Alignment:
Q  214 aaaagtaaccacttacatttttaagataaaaattttattcatagatt 260  Q
    ||||||||  ||||| ||||||||||||||||||||||| |||||||    
T  8405821 aaaagtaaaaacttatatttttaagataaaaattttattaatagatt 8405867  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 186 - 250
Target Start/End: Complemental strand, 2089197 - 2089133
Alignment:
Q  186 aaaaaagtggtgtaataattatttgatcaaaagtaaccacttacatttttaagataaaaatttta 250  Q
    |||||| | |||||||||||||||||||||||||||   |||| ||||  |||| ||||||||||    
T  2089197 aaaaaaattgtgtaataattatttgatcaaaagtaaaatcttatatttccaagacaaaaatttta 2089133  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 167 - 239
Target Start/End: Complemental strand, 30840697 - 30840626
Alignment:
Q  167 aaaataagaaagttttcataaaaaagtggtgtaataattatttgatcaaaagtaaccacttacatttttaaga 239  Q
    |||| ||| ||||||||| |||||||| ||||||| |||| |||||||||||||||  |||| ||||| ||||    
T  30840697 aaaacaagtaagttttca-aaaaaagttgtgtaatcattacttgatcaaaagtaacatcttatattttcaaga 30840626  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 167 - 244
Target Start/End: Original strand, 10008206 - 10008283
Alignment:
Q  167 aaaataagaaagttttcataaaaaagtggtgtaataattatttgatcaaaagtaaccacttacatttttaagataaaa 244  Q
    |||| ||| ||||||| || ||||||||||||||| |||| ||||||||||||||||  ||| |||||||||| ||||    
T  10008206 aaaagaagtaagtttttattaaaaagtggtgtaattattacttgatcaaaagtaaccgtttatatttttaagacaaaa 10008283  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 167 - 252
Target Start/End: Complemental strand, 33121411 - 33121326
Alignment:
Q  167 aaaataagaaagttttcataaaaaagtggtgtaataattatttgatcaaaagtaaccacttacatttttaagataaaaattttatt 252  Q
    |||||||| || ||||||| ||||||| ||||||| ||| |||||| |||| ||||  |||| ||||| |||| ||||||||||||    
T  33121411 aaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgataaaaaataacatcttatattttcaagacaaaaattttatt 33121326  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 176 - 244
Target Start/End: Original strand, 18493265 - 18493333
Alignment:
Q  176 aagttttcataaaaaagtggtgtaataattatttgatcaaaagtaaccacttacatttttaagataaaa 244  Q
    ||||||| ||||||||||  ||||||||||| |||||||||||||||   ||| ||||| |||||||||    
T  18493265 aagtttttataaaaaagttttgtaataattacttgatcaaaagtaacattttatattttcaagataaaa 18493333  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 220
Target Start/End: Original strand, 27082336 - 27082377
Alignment:
Q  179 ttttcataaaaaagtggtgtaataattatttgatcaaaagta 220  Q
    ||||||| ||||||| ||||||| ||||||||||||||||||    
T  27082336 ttttcatgaaaaagttgtgtaatgattatttgatcaaaagta 27082377  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 167 - 269
Target Start/End: Original strand, 20775085 - 20775187
Alignment:
Q  167 aaaataagaaagttttcataaaaaagtggtgtaataattatttgatcaaaagtaaccacttacatttttaagataaaaattttattcatagattcattga 266  Q
    |||| ||| ||||||| || |||||||  |||||||||||||||||||||| |||   |||| |||| ||||| |||  ||||||| ||||||||||| |    
T  20775085 aaaacaagtaagtttttatgaaaaagttatgtaataattatttgatcaaaaataatatcttatatttctaagacaaattttttatttatagattcattaa 20775184  T
Q  267 cca 269  Q
    |||    
T  20775185 cca 20775187  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 167 - 222
Target Start/End: Original strand, 27284085 - 27284140
Alignment:
Q  167 aaaataagaaagttttcataaaaaagtggtgtaataattatttgatcaaaagtaac 222  Q
    |||||||  ||||||| |||||||||| ||| ||| ||||||||||||||||||||    
T  27284085 aaaataaataagtttttataaaaaagttgtgcaatcattatttgatcaaaagtaac 27284140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 261
Target Start/End: Complemental strand, 2565502 - 2565417
Alignment:
Q  176 aagttttcataaaaaagtggtgtaataattatttgatcaaaagtaaccacttacatttttaagataaaaattttattcatagattc 261  Q
    ||||||| ||| |||||| ||||||| |||| |||||||||||||||   |||  |||| ||||||||| || |||| ||||||||    
T  2565502 aagtttttatagaaaagttgtgtaatcattacttgatcaaaagtaacattttatgttttcaagataaaatttatatttatagattc 2565417  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 276
Target Start/End: Complemental strand, 41142382 - 41142285
Alignment:
Q  179 ttttcataaaaaagtggtgtaataattatttgatcaaaagtaaccacttacatttttaagataaaaattttattcatagattcattgaccaatgcccc 276  Q
    |||||| ||||||||  |||||| ||||||| |||||||||||   ||||  |||| |||| |||| ||||||||||  |||| || |||||||||||    
T  41142382 ttttcacaaaaaagtaatgtaattattatttaatcaaaagtaagaccttattttttcaagacaaaatttttattcatgaattccttaaccaatgcccc 41142285  T

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