View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1369_low_39 (Length: 375)
Name: NF1369_low_39
Description: NF1369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1369_low_39 |
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Alignment Details
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 18 - 246
Target Start/End: Complemental strand, 50427995 - 50427767
Alignment:
| Q |
18 |
atcatcaattattgccacggtgccgaagtgttggatattaaagttgggtccatttataccggcaacggtgactgccgacgtgttttcaccggtgaagtgg |
117 |
Q |
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| T |
50427995 |
atcatcgattattgccacggtgccgaagtgttggatattaaagttgggtccatttataccggcaacggtgactgccgacgtgttttcaccggtgaagtgg |
50427896 |
T |
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| Q |
118 |
tcgtgaatgtagaagagcatgttggtttgatttggttcgagtttttggaaggtgtaggccacatagaggatgatcaatgtgaagatgaagaaaaatgagc |
217 |
Q |
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| T |
50427895 |
tcgtgaatgtagaagagcatgttggtttgatttggttcgagtttttggaaggtgtaggccacatagaggatgatcaatgtgaagatgaagaaaaatgagc |
50427796 |
T |
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| Q |
218 |
tggaagtgaggtttagtggattgaccatg |
246 |
Q |
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| T |
50427795 |
tggaagtgaggtttagtggattgaccatg |
50427767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 102 - 227
Target Start/End: Complemental strand, 50422738 - 50422613
Alignment:
| Q |
102 |
ttcaccggtgaagtggtcgtgaatgtagaagagcatgttggtttgatttggttcgagtttttggaaggtgtaggccacatagaggatgatcaatgtgaag |
201 |
Q |
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| T |
50422738 |
ttcaccggtgaagtggtcatggacgtagaagacgaggttggtttggtttggttcgagtttagggaaggtataggctacatagatgatggtcaatgtgaag |
50422639 |
T |
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| Q |
202 |
atgaagaaaaatgagctggaagtgag |
227 |
Q |
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| T |
50422638 |
atgaagaagaagaagttggaagtgag |
50422613 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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