View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1369_low_4 (Length: 655)

Name: NF1369_low_4
Description: NF1369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1369_low_4
NF1369_low_4
[»] chr1 (4 HSPs)
chr1 (29-592)||(41941001-41941572)
chr1 (72-153)||(30848891-30848972)
chr1 (90-153)||(42517104-42517167)
chr1 (231-283)||(7440955-7441007)
[»] chr6 (3 HSPs)
chr6 (73-148)||(9627260-9627333)
chr6 (90-148)||(1415476-1415534)
chr6 (72-153)||(10384057-10384138)
[»] chr2 (2 HSPs)
chr2 (71-148)||(38288569-38288648)
chr2 (93-146)||(31395288-31395341)
[»] chr5 (1 HSPs)
chr5 (77-153)||(19276879-19276958)
[»] scaffold0035 (1 HSPs)
scaffold0035 (229-265)||(24532-24568)
[»] chr3 (5 HSPs)
chr3 (85-121)||(8540980-8541016)
chr3 (85-121)||(8543031-8543067)
chr3 (90-193)||(35223400-35223507)
chr3 (87-147)||(17118333-17118396)
chr3 (83-132)||(29794681-29794730)
[»] scaffold0154 (1 HSPs)
scaffold0154 (107-153)||(19338-19384)
[»] chr4 (2 HSPs)
chr4 (84-153)||(3284223-3284295)
chr4 (85-140)||(36010202-36010260)
[»] chr8 (1 HSPs)
chr8 (72-152)||(4490279-4490362)


Alignment Details
Target: chr1 (Bit Score: 478; Significance: 0; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 29 - 592
Target Start/End: Original strand, 41941001 - 41941572
Alignment:
Q  29 agtcgttgaagtataactcatatatacaa--------agaaggcatgagtatacggtttaggggtaatattgtaaactgaatcgtagtagtagta---ta 117  Q
    |||||||||||||| ||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||    
T  41941001 agtcgttgaagtatgactcatatatacaagacattaaagaaggcatgagtatacggtttaggggtaatattgtaaactgaatcgtagtagtagtagtata 41941100  T
Q  118 tatattacttgtaacattgaaaccctaattcatcacgcaacataaacagagctatagctactctattgtcgcagagttagtcacaaattggccgaactgt 217  Q
    ||||||||||||||||||||||||||||||||||||  |||||||| ||| ||||||||||||||||||||||||| | |||||| |||||| |||||||    
T  41941101 tatattacttgtaacattgaaaccctaattcatcacataacataaatagaactatagctactctattgtcgcagaggtcgtcacagattggctgaactgt 41941200  T
Q  218 gttcattattatcttttatttttgttctcttatttaatcttctgttactagtcgttgttttaacattagttatggctcgtgcgtgaagtgtattcagcga 317  Q
    ||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41941201 gttcatta---tcttttatttttgttctcttatttaatcttctgttactagtcgttgttttaacattagttatggctcgtgcgtgaagtgtattcagcga 41941297  T
Q  318 cagataagagtatgcatttgctaggtcgcaatatggagagtgatagtgcatgtgtatgtgtgcatagaatgagagagatttaactgtctggaatatgatt 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  41941298 cagataagagtatgcatttgctaggtcgcaatatggagagtgatagtgcatgtgtatgtgtgcatagaatgagagagattttactgtctggaatatgatt 41941397  T
Q  418 ctgagtttagacaagcacttgtaacgcttagatgaagtgttagtgtcagtgagagtaaagatggaccactgatacatgctgctgcttttggtgtttcact 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41941398 ctgagtttagacaagcacttgtaacgcttagatgaagtgttagtgtcagtgagagtaaagatggaccactgatacatgctgctgcttttggtgtttcact 41941497  T
Q  518 caaatggtattcttttgccttttcagaacaactacaaacagttcctatatgaaacattttcagtcagggtctctg 592  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41941498 caaatggtattcttttgccttttcagaacaactacaaacagttcctatatgaaacattttcagtcagggtctctg 41941572  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 72 - 153
Target Start/End: Original strand, 30848891 - 30848972
Alignment:
Q  72 tacggtttaggggtaatattgtaaactgaatcgtagtagtagtatatatattacttgtaacattgaaaccctaattcatcac 153  Q
    ||||||| | ||||||||||||||||||||| ||||| ||| ||||||||||  ||||| || | |||||||||||||||||    
T  30848891 tacggttcaagggtaatattgtaaactgaattgtagtggtactatatatattgtttgtaccacttaaaccctaattcatcac 30848972  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 90 - 153
Target Start/End: Original strand, 42517104 - 42517167
Alignment:
Q  90 ttgtaaactgaatcgtagtagtagtatatatattacttgtaacattgaaaccctaattcatcac 153  Q
    |||||| || ||||||||||||| ||||||||||  ||||||||  ||||||||||||||||||    
T  42517104 ttgtaatctaaatcgtagtagtactatatatattgtttgtaacaccgaaaccctaattcatcac 42517167  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 231 - 283
Target Start/End: Original strand, 7440955 - 7441007
Alignment:
Q  231 ttttatttttgttctcttatttaatcttctgttactagtcgttgttttaacat 283  Q
    ||||| ||| |||||||||||||||||| |||||||||  |||||| ||||||    
T  7440955 ttttactttcgttctcttatttaatcttatgttactagatgttgttctaacat 7441007  T

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Target: chr6 (Bit Score: 53; Significance: 4e-21; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 73 - 148
Target Start/End: Complemental strand, 9627333 - 9627260
Alignment:
Q  73 acggtttaggggtaatattgtaaactgaatcgtagtagtagtatatatattacttgtaacattgaaaccctaattc 148  Q
    ||||||||||||||||||||||||||||||||||||||||   |||||||| ||||||||| ||||||||||||||    
T  9627333 acggtttaggggtaatattgtaaactgaatcgtagtagta--ctatatattgcttgtaacactgaaaccctaattc 9627260  T

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Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 90 - 148
Target Start/End: Original strand, 1415476 - 1415534
Alignment:
Q  90 ttgtaaactgaatcgtagtagtagtatatatattacttgtaacattgaaaccctaattc 148  Q
    |||||||||||||| |||||||| ||||||||  |||||||||||||||||||||||||    
T  1415476 ttgtaaactgaatcatagtagtactatatatacaacttgtaacattgaaaccctaattc 1415534  T

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Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 72 - 153
Target Start/End: Complemental strand, 10384138 - 10384057
Alignment:
Q  72 tacggtttaggggtaatattgtaaactgaatcgtagtagtagtatatatattacttgtaacattgaaaccctaattcatcac 153  Q
    ||||||| | |||||||||| |||||||||||||||||||  |||||||||||||| ||| | | ||||||||||| |||||    
T  10384138 tacggttcatgggtaatattataaactgaatcgtagtagttctatatatattacttataatactaaaaccctaatttatcac 10384057  T

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Target: chr2 (Bit Score: 49; Significance: 1e-18; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 71 - 148
Target Start/End: Complemental strand, 38288648 - 38288569
Alignment:
Q  71 atacggtttaggggtaatattgtaaactgaatcgtagtagta--gtatatatattacttgtaacattgaaaccctaattc 148  Q
    ||||||||||||||||||||||||||  ||||||||||||||   |||||||||| ||| ||||||||||||||||||||    
T  38288648 atacggtttaggggtaatattgtaaagagaatcgtagtagtattatatatatattgcttataacattgaaaccctaattc 38288569  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 93 - 146
Target Start/End: Complemental strand, 31395341 - 31395288
Alignment:
Q  93 taaactgaatcgtagtagtagtatatatattacttgtaacattgaaaccctaat 146  Q
    |||| ||||||||||||||| |||||||||| ||||||||| ||||||||||||    
T  31395341 taaattgaatcgtagtagtactatatatattgcttgtaacactgaaaccctaat 31395288  T

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Target: chr5 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 77 - 153
Target Start/End: Original strand, 19276879 - 19276958
Alignment:
Q  77 tttaggggtaatattgtaaactgaatcgtagta---gtagtatatatattacttgtaacattgaaaccctaattcatcac 153  Q
    |||| |||||||||||||| |||||||||||||   ||| |||||||||| || |||||||||||||||||| |||||||    
T  19276879 tttaagggtaatattgtaatctgaatcgtagtaattgtactatatatattgctagtaacattgaaaccctaaatcatcac 19276958  T

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Target: scaffold0035 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 229 - 265
Target Start/End: Original strand, 24532 - 24568
Alignment:
Q  229 tcttttatttttgttctcttatttaatcttctgttac 265  Q
    ||||||| |||||||||||||||||||||||||||||    
T  24532 tcttttacttttgttctcttatttaatcttctgttac 24568  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000004; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 85 - 121
Target Start/End: Original strand, 8540980 - 8541016
Alignment:
Q  85 taatattgtaaactgaatcgtagtagtagtatatata 121  Q
    |||||||||||||||||||||||||||| ||||||||    
T  8540980 taatattgtaaactgaatcgtagtagtactatatata 8541016  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 85 - 121
Target Start/End: Original strand, 8543031 - 8543067
Alignment:
Q  85 taatattgtaaactgaatcgtagtagtagtatatata 121  Q
    |||||||||||||||||||||||||||| ||||||||    
T  8543031 taatattgtaaactgaatcgtagtagtactatatata 8543067  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 90 - 193
Target Start/End: Complemental strand, 35223507 - 35223400
Alignment:
Q  90 ttgtaaactgaatcgtagtagtagta-tatatattacttgtaacattgaaaccctaa--ttcatcac-gcaacataaacagagctatagctactctattg 185  Q
    |||||| ||||||||||| ||||||| |||||||| ||| |||| ||||||||||||  |||||| | | || |||||| || |||||||| |||||| |    
T  35223507 ttgtaatctgaatcgtagcagtagtaatatatattgcttataactttgaaaccctaattttcatcgcagaaatataaacggaactatagctgctctatag 35223408  T
Q  186 tcgcagag 193  Q
    ||||||||    
T  35223407 tcgcagag 35223400  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 87 - 147
Target Start/End: Complemental strand, 17118396 - 17118333
Alignment:
Q  87 atattgtaaactgaatcgtagtagtagt---atatatattacttgtaacattgaaaccctaatt 147  Q
    |||||||||||||||| |||||| ||||   ||||||||| | ||||||| |||||||||||||    
T  17118396 atattgtaaactgaattgtagtaatagtgctatatatattgcctgtaacactgaaaccctaatt 17118333  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 83 - 132
Target Start/End: Complemental strand, 29794730 - 29794681
Alignment:
Q  83 ggtaatattgtaaactgaatcgtagtagtagtatatatattacttgtaac 132  Q
    |||||||||||||||| |||||||||||||   |||||||| ||||||||    
T  29794730 ggtaatattgtaaactaaatcgtagtagtatactatatattgcttgtaac 29794681  T

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Target: scaffold0154 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 107 - 153
Target Start/End: Original strand, 19338 - 19384
Alignment:
Q  107 gtagtagtatatatattacttgtaacattgaaaccctaattcatcac 153  Q
    |||||| ||||||||||  |||||||| |||||||||||||||||||    
T  19338 gtagtactatatatattgtttgtaacagtgaaaccctaattcatcac 19384  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 84 - 153
Target Start/End: Complemental strand, 3284295 - 3284223
Alignment:
Q  84 gtaatattgtaaactgaatcgtagtagtagta---tatatattacttgtaacattgaaaccctaattcatcac 153  Q
    ||||||||||||||| ||| ||||||||||||   ||||| || ||||||||  | |||||||||||||||||    
T  3284295 gtaatattgtaaacttaattgtagtagtagtaatatatattttgcttgtaacgctaaaaccctaattcatcac 3284223  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 85 - 140
Target Start/End: Original strand, 36010202 - 36010260
Alignment:
Q  85 taatattgtaaactgaatcgt---agtagtagtatatatattacttgtaacattgaaac 140  Q
    ||||||||| |||||||||||   ||||||| ||||||||||  |||||||||||||||    
T  36010202 taatattgtgaactgaatcgtagaagtagtattatatatattgtttgtaacattgaaac 36010260  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 72 - 152
Target Start/End: Original strand, 4490279 - 4490362
Alignment:
Q  72 tacggtttaggggtaatattgtaaactgaatcgta---gtagtagtatatatattacttgtaacattgaaaccctaattcatca 152  Q
    |||||||||||| || |||||||||||||||| ||   ||| || |||||||||| | || |||| ||||||| ||||||||||    
T  4490279 tacggtttagggatattattgtaaactgaatcataattgtattactatatatattgcatgcaacactgaaaccttaattcatca 4490362  T

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