View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1369_low_40 (Length: 369)

Name: NF1369_low_40
Description: NF1369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1369_low_40
NF1369_low_40
[»] chr5 (9 HSPs)
chr5 (52-176)||(29568361-29568485)
chr5 (52-176)||(29168239-29168363)
chr5 (52-175)||(1758133-1758256)
chr5 (52-175)||(29425281-29425404)
chr5 (68-175)||(29569708-29569815)
chr5 (68-176)||(27918634-27918742)
chr5 (253-296)||(1758024-1758067)
chr5 (253-296)||(29568559-29568602)
chr5 (253-292)||(29569867-29569906)
[»] chr4 (8 HSPs)
chr4 (47-175)||(27521322-27521450)
chr4 (52-175)||(18986085-18986208)
chr4 (52-170)||(27461990-27462108)
chr4 (52-170)||(27482129-27482247)
chr4 (253-296)||(27461876-27461919)
chr4 (253-296)||(27482015-27482058)
chr4 (253-296)||(27521516-27521559)
chr4 (253-296)||(18985976-18986019)
[»] chr3 (2 HSPs)
chr3 (68-176)||(25518468-25518576)
chr3 (253-296)||(25518357-25518400)


Alignment Details
Target: chr5 (Bit Score: 121; Significance: 6e-62; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 52 - 176
Target Start/End: Original strand, 29568361 - 29568485
Alignment:
Q  52 cagagacacagtggctaagagcattcccacggagactgaaaggaagtgtaatggcggagaagccattacgggtgagattgcttgcgtcgaaagaatgctt 151  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29568361 cagagacacagcggctaagagcattcccacggagactgaaaggaagtgtaatggcggagaagccattacgggtgagattgcttgcgtcgaaagaatgctt 29568460  T
Q  152 cttggatgatagttggtgagcagaa 176  Q
    |||||||||||||||||||||||||    
T  29568461 cttggatgatagttggtgagcagaa 29568485  T

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Target: chr5; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 52 - 176
Target Start/End: Complemental strand, 29168363 - 29168239
Alignment:
Q  52 cagagacacagtggctaagagcattcccacggagactgaaaggaagtgtaatggcggagaagccattacgggtgagattgcttgcgtcgaaagaatgctt 151  Q
    |||||||||||  ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||    
T  29168363 cagagacacagcagctaagagcattcccacggagactgaaaggaagtgtaatggtggagaagccattacgggtgagattgcttgcgttgaaagaatgctt 29168264  T
Q  152 cttggatgatagttggtgagcagaa 176  Q
     ||||||||||||||||||||||||    
T  29168263 attggatgatagttggtgagcagaa 29168239  T

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Target: chr5; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 52 - 175
Target Start/End: Complemental strand, 1758256 - 1758133
Alignment:
Q  52 cagagacacagtggctaagagcattcccacggagactgaaaggaagtgtaatggcggagaagccattacgggtgagattgcttgcgtcgaaagaatgctt 151  Q
    ||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  1758256 cagagacacagcggctaagagcattcccgcggagactgaaaggaagtgtaatggcggagaagccattacgggtgagattgcttgcgtcaaaagaatgctt 1758157  T
Q  152 cttggatgatagttggtgagcaga 175  Q
    ||||  |||| |||||||||||||    
T  1758156 cttgagtgatggttggtgagcaga 1758133  T

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Target: chr5; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 52 - 175
Target Start/End: Complemental strand, 29425404 - 29425281
Alignment:
Q  52 cagagacacagtggctaagagcattcccacggagactgaaaggaagtgtaatggcggagaagccattacgggtgagattgcttgcgtcgaaagaatgctt 151  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||  |||||||||||||||| |||||||||||    
T  29425404 cagagacacagcggctaagagcattcccacggagactgaaaggaagtgtaatggcagagaagccattacgcatgagattgcttgcgtcaaaagaatgctt 29425305  T
Q  152 cttggatgatagttggtgagcaga 175  Q
    |||||||||| |||||||||||||    
T  29425304 cttggatgatggttggtgagcaga 29425281  T

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Target: chr5; HSP #5
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 68 - 175
Target Start/End: Original strand, 29569708 - 29569815
Alignment:
Q  68 aagagcattcccacggagactgaaaggaagtgtaatggcggagaagccattacgggtgagattgcttgcgtcgaaagaatgcttcttggatgatagttgg 167  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  29569708 aagagcattgccacggagactgaaaggaagtgtaatggcggagaagccattacgggtgagattgcttgcgtcggaagaatgcttcttggatgatagttgg 29569807  T
Q  168 tgagcaga 175  Q
    ||||||||    
T  29569808 tgagcaga 29569815  T

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Target: chr5; HSP #6
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 68 - 176
Target Start/End: Complemental strand, 27918742 - 27918634
Alignment:
Q  68 aagagcattcccacggagactgaaaggaagtgtaatggcggagaagccattacgggtgagattgcttgcgtcgaaagaatgcttcttggatgatagttgg 167  Q
    |||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |  ||||||||||||||||||||||||||    
T  27918742 aagagcgttgccacggagactgaaaggaagtgtaatggcggagaagccattacgggtgagattgcttgcgccagaagaatgcttcttggatgatagttgg 27918643  T
Q  168 tgagcagaa 176  Q
    |||||||||    
T  27918642 tgagcagaa 27918634  T

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Target: chr5; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 253 - 296
Target Start/End: Complemental strand, 1758067 - 1758024
Alignment:
Q  253 ttggaataatcatggattgtttctgtttgtgagggatcaacatg 296  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  1758067 ttggaataatcatggattgtttctgtttgtgagggatcaacatg 1758024  T

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Target: chr5; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 253 - 296
Target Start/End: Original strand, 29568559 - 29568602
Alignment:
Q  253 ttggaataatcatggattgtttctgtttgtgagggatcaacatg 296  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  29568559 ttggaataatcatggattgtttctgtttgtgagggatcaacatg 29568602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 253 - 292
Target Start/End: Original strand, 29569867 - 29569906
Alignment:
Q  253 ttggaataatcatggattgtttctgtttgtgagggatcaa 292  Q
    |||||||||||||||||||||| |||||||||||||||||    
T  29569867 ttggaataatcatggattgtttgtgtttgtgagggatcaa 29569906  T

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Target: chr4 (Bit Score: 101; Significance: 5e-50; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 47 - 175
Target Start/End: Original strand, 27521322 - 27521450
Alignment:
Q  47 aggagcagagacacagtggctaagagcattcccacggagactgaaaggaagtgtaatggcggagaagccattacgggtgagattgcttgcgtcgaaagaa 146  Q
    |||| ||||||||||| |||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||    
T  27521322 aggatcagagacacagcggctaagagcattcccgcggagactgaaaggaagtgtaatggcagagaagccattacgggtgagattgcttgcgtcaaaagaa 27521421  T
Q  147 tgcttcttggatgatagttggtgagcaga 175  Q
    ||||||||||||||| ||||||| |||||    
T  27521422 tgcttcttggatgatggttggtgggcaga 27521450  T

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Target: chr4; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 52 - 175
Target Start/End: Complemental strand, 18986208 - 18986085
Alignment:
Q  52 cagagacacagtggctaagagcattcccacggagactgaaaggaagtgtaatggcggagaagccattacgggtgagattgcttgcgtcgaaagaatgctt 151  Q
    ||||||||||| ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  18986208 cagagacacagcggctaagagtattcccacggagactgaaagaaagtgtaatggcggagaagccattacgggtgagattgcttgcgtcaaaagaatgctt 18986109  T
Q  152 cttggatgatagttggtgagcaga 175  Q
    |||||||||  |||||||||||||    
T  18986108 cttggatgacggttggtgagcaga 18986085  T

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Target: chr4; HSP #3
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 52 - 170
Target Start/End: Complemental strand, 27462108 - 27461990
Alignment:
Q  52 cagagacacagtggctaagagcattcccacggagactgaaaggaagtgtaatggcggagaagccattacgggtgagattgcttgcgtcgaaagaatgctt 151  Q
    ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||    
T  27462108 cagagacacagcggctaagagcatttccacggagactgaaaggaagtgtaatggcagagaagccattacgggtgagattgcttgcgtcaaaagaatgctt 27462009  T
Q  152 cttggatgatagttggtga 170  Q
    |||||||||| ||||||||    
T  27462008 cttggatgatggttggtga 27461990  T

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Target: chr4; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 52 - 170
Target Start/End: Complemental strand, 27482247 - 27482129
Alignment:
Q  52 cagagacacagtggctaagagcattcccacggagactgaaaggaagtgtaatggcggagaagccattacgggtgagattgcttgcgtcgaaagaatgctt 151  Q
    ||||||||||| |||||||||||||||| |||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| |||||||||||    
T  27482247 cagagacacagcggctaagagcattcccgcggagactgaaaggaattgtaatggcagagaagccattacgggtgagattgcttgcgtcaaaagaatgctt 27482148  T
Q  152 cttggatgatagttggtga 170  Q
    |||||||||| ||||||||    
T  27482147 cttggatgatggttggtga 27482129  T

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Target: chr4; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 253 - 296
Target Start/End: Complemental strand, 27461919 - 27461876
Alignment:
Q  253 ttggaataatcatggattgtttctgtttgtgagggatcaacatg 296  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  27461919 ttggaataatcatggattgtttctgtttgtgagggatcaacatg 27461876  T

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Target: chr4; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 253 - 296
Target Start/End: Complemental strand, 27482058 - 27482015
Alignment:
Q  253 ttggaataatcatggattgtttctgtttgtgagggatcaacatg 296  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  27482058 ttggaataatcatggattgtttctgtttgtgagggatcaacatg 27482015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 253 - 296
Target Start/End: Original strand, 27521516 - 27521559
Alignment:
Q  253 ttggaataatcatggattgtttctgtttgtgagggatcaacatg 296  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  27521516 ttggaataatcatggattgtttctgtttgtgagggatcaacatg 27521559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 253 - 296
Target Start/End: Complemental strand, 18986019 - 18985976
Alignment:
Q  253 ttggaataatcatggattgtttctgtttgtgagggatcaacatg 296  Q
    ||||||||||||||||||||||||||||||||||||||| ||||    
T  18986019 ttggaataatcatggattgtttctgtttgtgagggatcaccatg 18985976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 93; Significance: 3e-45; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 68 - 176
Target Start/End: Complemental strand, 25518576 - 25518468
Alignment:
Q  68 aagagcattcccacggagactgaaaggaagtgtaatggcggagaagccattacgggtgagattgcttgcgtcgaaagaatgcttcttggatgatagttgg 167  Q
    ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  25518576 aagagcattaccacgaagactgaaaggaagtgtaatggcggagaagccattacgggtgagattgcttgcgtcgaaagaatgcttcttggatgatggttgg 25518477  T
Q  168 tgagcagaa 176  Q
    |||| ||||    
T  25518476 tgaggagaa 25518468  T

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Target: chr3; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 253 - 296
Target Start/End: Complemental strand, 25518400 - 25518357
Alignment:
Q  253 ttggaataatcatggattgtttctgtttgtgagggatcaacatg 296  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  25518400 ttggaataatcatggattgtttctgtttgtgagggatcaacatg 25518357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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