View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1369_low_45 (Length: 353)
Name: NF1369_low_45
Description: NF1369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1369_low_45 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 186; Significance: 1e-100; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 30 - 251
Target Start/End: Complemental strand, 47947280 - 47947061
Alignment:
| Q |
30 |
accacaactcccgattgtttgccgcttggactgtaagttcctatttattgaaagctataatcttatagtagttgnnnnnnnataaccacaaatccatata |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |
|
|
| T |
47947280 |
accacaactcccgattgtttgccgcttggactataagttcctatttattgaaagcta--atcttatagtagttgtttttttataaccacaaatccatata |
47947183 |
T |
|
| Q |
130 |
ttgattgcggtgcagcaagattcataccatacaacaggttgcttcgatcttacttgccaaggatttgtgcaaatagcctcagagatagcacttggttcta |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47947182 |
ttgattgcggtgcagcaagattcataccatacaacaggttgcttcgatcttacttgccaaggatttgtgcaaatagcctcagagatagcacttggttcta |
47947083 |
T |
|
| Q |
230 |
ccgtaggaccttattcatctca |
251 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
47947082 |
ccgtaggaccttattcatctca |
47947061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 130 - 246
Target Start/End: Complemental strand, 47941135 - 47941019
Alignment:
| Q |
130 |
ttgattgcggtgcagcaagattcataccatacaacaggttgcttcgatcttacttgccaaggatttgtgcaaatagcctcagagatagcacttggttcta |
229 |
Q |
| |
|
||||||||||||||| ||||||||||||| ||||||||||||| |||||||| || || ||||||||||||||| ||||| | ||||||||||||| |
|
|
| T |
47941135 |
ttgattgcggtgcagaaagattcataccagtcaacaggttgctttgatcttacctgtagtggttttgtgcaaatagccacagagtttgcacttggttcta |
47941036 |
T |
|
| Q |
230 |
ccgtaggaccttattca |
246 |
Q |
| |
|
| || | |||||||||| |
|
|
| T |
47941035 |
cagtggaaccttattca |
47941019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 69
Target Start/End: Complemental strand, 47941314 - 47941275
Alignment:
| Q |
30 |
accacaactcccgattgtttgccgcttggactgtaagttc |
69 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
47941314 |
accacaactcccgattgtttaccgcttggactgtaagttc |
47941275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 128 - 202
Target Start/End: Complemental strand, 47909690 - 47909616
Alignment:
| Q |
128 |
tattgattgcggtgcagcaagattcataccatacaacaggttgcttcgatcttacttgccaaggatttgtgcaaa |
202 |
Q |
| |
|
||||||||| ||||||| ||||| ||||| | ||||||||||||| |||||||||||| | || |||||||||| |
|
|
| T |
47909690 |
tattgattgtggtgcagaaagatacatacaagtcaacaggttgctttgatcttacttgcaagggttttgtgcaaa |
47909616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University