View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1369_low_50 (Length: 342)
Name: NF1369_low_50
Description: NF1369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1369_low_50 |
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Alignment Details
Target: chr7 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 331
Target Start/End: Complemental strand, 30868496 - 30868165
Alignment:
| Q |
1 |
taaacttaaataaaaaagcaaacacataatacttgtgttttcctcatcaccaaatcattctgcacttttgcttttcgtgttggtctttcatggttatacc |
100 |
Q |
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| T |
30868496 |
taaacttaaataaaaaagcaaacaaataatacatgtgttttccccatcaccaaatcattctgcacttttgcttttcgtgttggtctttcatggttatacc |
30868397 |
T |
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| Q |
101 |
caccatcaccgtatagctcaagaatgaaaacaagttttttcttcttcttaataatagaa-gccagttcatatatcaacgatatttttattaaaattcaat |
199 |
Q |
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||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| |
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| T |
30868396 |
caccatcaccgtaaagctcaagaatgaaaacaagtttttttttcttcttaataatagaatgccagttcatatatcaacgatatttttgttaaaattcaat |
30868297 |
T |
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| Q |
200 |
tgtaacaaaaccttctcnnnnnnncgcaacagaaggaagaattttttattgatcaacacctccaggtaccactaacactccccttgcgaccctatctcaa |
299 |
Q |
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||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30868296 |
tgtaacaaatccttctcaaaaaaacgcaacagaaggaagaattttttattgatcaacacctccaggtaccactaacactccccttgcgaccctatctcaa |
30868197 |
T |
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| Q |
300 |
taagcaatttccaggatcccaacaccattcat |
331 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
30868196 |
taagcaatttccaggatcccaacaccattcat |
30868165 |
T |
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