View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1369_low_52 (Length: 335)
Name: NF1369_low_52
Description: NF1369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1369_low_52 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 1 - 335
Target Start/End: Original strand, 42837163 - 42837497
Alignment:
| Q |
1 |
attgatctgatcggaatcaatcattcatcatcaatggagatggagacagatgaaggtataaacagtcttaaagctcgcatagaaactcaacacaagtcgc |
100 |
Q |
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| T |
42837163 |
attgatctgatcggaatcaatcattcatcatcaatggagatggagacagatgaaggtataaacagtcttaaagctcgcatagaaactcaacacaagtcgc |
42837262 |
T |
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| Q |
101 |
acatggacatgctttcttctgtacaatctgttatacctaattttgtttcttctctcgacctttctctcaaagttctctcttctttcaaccaccgtccttt |
200 |
Q |
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| T |
42837263 |
acatgtacatgctttcttctgtacaatctgttatacctaattttgtttcttctctcgacctttctctcaaagttctctcttctttcaaccaccgtccttt |
42837362 |
T |
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| Q |
201 |
tgctcctacacctcctttaaccaatttcaaccctcccaaatcatcatctctccaacaactacctcaaaaaccttctgttaaaaccttgaaaacctctctt |
300 |
Q |
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| T |
42837363 |
tgctcctacacctcctttaaccaatttcaaccctcccaaatcatcatctctccaacaactacctcaaaaaccttctgttaaaaccttgaaaacctctctt |
42837462 |
T |
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| Q |
301 |
gttgttactacaaatccagtattagagaaagttac |
335 |
Q |
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| T |
42837463 |
gttgttactacaaatccagtattagagaaagttac |
42837497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 71 - 274
Target Start/End: Complemental strand, 43915079 - 43914867
Alignment:
| Q |
71 |
aagctcgcatagaaactcaacacaagtcgcacatggacatgctttcttctgtacaatctgttatacctaattttgtttcttctctcgacctttctctcaa |
170 |
Q |
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| T |
43915079 |
aagctcgcatagaaacccaacacaagtcacacatggacatgctttcttctgtacaatccgttatacctaatcttgtttcttctcttgacctttctctgaa |
43914980 |
T |
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| Q |
171 |
agttctctcttctttcaaccaccgtccttttgctcctaca------------cctcctttaaccaatttcaaccctcccaaatcatcatctctccaacaa |
258 |
Q |
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| T |
43914979 |
agttctctcttctttcaaccaccgtccttttgctcctacaccccctctccctcctcctctaaccaatttcaacccttccaa---atcatctctccaacaa |
43914883 |
T |
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| Q |
259 |
ctacctcaaaaacctt |
274 |
Q |
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| T |
43914882 |
ctacctcaaaaccctt |
43914867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 15 - 66
Target Start/End: Complemental strand, 43915156 - 43915105
Alignment:
| Q |
15 |
aatcaatcattcatcatcaatggagatggagacagatgaaggtataaacagt |
66 |
Q |
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| T |
43915156 |
aatccatcattcatcatccatgaacatggagacagatgaaggtttaaacagt |
43915105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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