View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1369_low_6 (Length: 615)

Name: NF1369_low_6
Description: NF1369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1369_low_6
NF1369_low_6
[»] chr1 (11 HSPs)
chr1 (29-414)||(26000529-26000918)
chr1 (445-610)||(26000922-26001086)
chr1 (309-413)||(44761560-44761664)
chr1 (307-351)||(9379279-9379323)
chr1 (306-342)||(10495894-10495930)
chr1 (306-342)||(15699178-15699214)
chr1 (306-342)||(29074940-29074976)
chr1 (306-342)||(32826017-32826053)
chr1 (306-342)||(40144873-40144909)
chr1 (306-342)||(45331397-45331433)
chr1 (306-342)||(49224012-49224048)
[»] chr4 (13 HSPs)
chr4 (306-396)||(38502511-38502601)
chr4 (306-396)||(53412110-53412200)
chr4 (308-346)||(54202251-54202289)
chr4 (306-411)||(6609748-6609853)
chr4 (306-351)||(26147644-26147689)
chr4 (306-351)||(32469977-32470022)
chr4 (306-351)||(42616932-42616977)
chr4 (306-355)||(54506831-54506880)
chr4 (306-342)||(3689618-3689654)
chr4 (306-342)||(11907628-11907664)
chr4 (306-342)||(17114496-17114532)
chr4 (306-342)||(47773048-47773084)
chr4 (306-342)||(52859828-52859864)
[»] chr3 (8 HSPs)
chr3 (306-382)||(54477482-54477558)
chr3 (306-362)||(29595750-29595806)
chr3 (306-396)||(52290895-52290985)
chr3 (306-351)||(45710897-45710942)
chr3 (319-392)||(48541036-48541109)
chr3 (306-351)||(54726532-54726577)
chr3 (306-342)||(29023989-29024025)
chr3 (306-342)||(37497548-37497584)
[»] chr5 (1 HSPs)
chr5 (310-377)||(18890580-18890647)
[»] chr7 (10 HSPs)
chr7 (306-351)||(18710131-18710176)
chr7 (306-396)||(32346082-32346172)
chr7 (306-351)||(83439-83484)
chr7 (306-351)||(17610568-17610613)
chr7 (306-342)||(3178234-3178270)
chr7 (306-342)||(21760014-21760050)
chr7 (306-342)||(27921051-27921087)
chr7 (306-342)||(38391811-38391847)
chr7 (306-342)||(42935724-42935760)
chr7 (306-342)||(43873986-43874022)
[»] chr8 (8 HSPs)
chr8 (306-342)||(2767315-2767351)
chr8 (319-362)||(30381771-30381814)
chr8 (306-396)||(31271023-31271113)
chr8 (309-382)||(4924094-4924167)
chr8 (306-342)||(5053177-5053213)
chr8 (306-342)||(13335272-13335308)
chr8 (306-342)||(22771859-22771895)
chr8 (306-342)||(36967417-36967453)
[»] chr2 (3 HSPs)
chr2 (318-396)||(17346395-17346473)
chr2 (306-342)||(16463745-16463781)
chr2 (319-351)||(41220980-41221012)
[»] chr6 (2 HSPs)
chr6 (306-346)||(4582003-4582043)
chr6 (306-342)||(6801987-6802023)


Alignment Details
Target: chr1 (Bit Score: 269; Significance: 1e-150; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 29 - 414
Target Start/End: Original strand, 26000529 - 26000918
Alignment:
Q  29 accaacttcgaggacattataagtccgagggtggtaatttctattatagaatagacgcaatcgaatcggaacattagtgtgaacctccctaaaatcacga 128  Q
    |||||||||||||||||||||||| ||| ||| ||||||||||||| |||||| ||||||||||| ||||||||||||||||||||||||||||||||||    
T  26000529 accaacttcgaggacattataagttcgaaggtcgtaatttctattacagaataaacgcaatcgaaccggaacattagtgtgaacctccctaaaatcacga 26000628  T
Q  129 accatccnnnnnnnnn---tccaagacattgctctcatccataacacccaacaacatttcatactacatttcataaatatcttaaaattcgtttttagtc 225  Q
    |||||||            ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||    
T  26000629 accatccaaaaaaaaaatatccaagacattgctctcatccataacacccaacaatatttcatactacatttcataaatatctcaaaattcgtttttagtc 26000728  T
Q  226 tttatatcaaaagttttagtcgcttaaatattttccgtcaagactttttgtttata-ttttttatcaactcatacatattcttgattttgatggtaaaat 324  Q
    ||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| ||||||||||  ||||| | |||||||||||||||||||||||    
T  26000729 tttatatcaaaagttttggtcgcttaaatattttccgtcaagattttttgtttatatttttttatcatttcatatacattcttgattttgatggtaaaat 26000828  T
Q  325 tattatcatttattaaaatatttttatcaatcataattgatagaatagttaagttgaacaaaattcaataaacacgaatataataataaa 414  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| |||||||||||||||||    
T  26000829 tattatcatttactaaaatatttttatcaatcataattgatagaatagttaaattgaacgaaattcaataaatacgaatataataataaa 26000918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 445 - 610
Target Start/End: Original strand, 26000922 - 26001086
Alignment:
Q  445 ttatttacgagacatttaaaatgagatgtaagaaatatatataatcaaaacaataattgtcgagcaagatagagtcttaatacgccagcactacctatat 544  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  26000922 ttatttaggagacatttaaaatgagatgtaagaaatatatataatcaaaacaataattgtcgagcaagatagagtct-aatacgccagcactacctatat 26001020  T
Q  545 tttcatttcaacacttctttatcccgttgtgcagcataagcatttcatactctactctctgctcct 610  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  26001021 tttcatttcaacacttctttatcccgttgtgcagcataagcatttcatactctactctcttctcct 26001086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 309 - 413
Target Start/End: Original strand, 44761560 - 44761664
Alignment:
Q  309 attttgatggtaaaattattatcatttattaaaatatttttatcaatcataattgatagaatagttaagttgaacaaaattcaataaacacgaatataat 408  Q
    ||||| ||| |||||||| ||||||||| |||||||| ||||| ||| ||| ||  | |||| |||||||||||  |||||||||||| | |  ||||||    
T  44761560 attttaatgataaaattaatatcatttactaaaatatctttattaattatagttagtggaatggttaagttgaatgaaattcaataaataagggtataat 44761659  T
Q  409 aataa 413  Q
    |||||    
T  44761660 aataa 44761664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 307 - 351
Target Start/End: Complemental strand, 9379323 - 9379279
Alignment:
Q  307 tgattttgatggtaaaattattatcatttattaaaatatttttat 351  Q
    ||||||| ||| |||||||| |||||||||||||||||| |||||    
T  9379323 tgattttaatgataaaattaatatcatttattaaaatatatttat 9379279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 306 - 342
Target Start/End: Complemental strand, 10495930 - 10495894
Alignment:
Q  306 ttgattttgatggtaaaattattatcatttattaaaa 342  Q
    ||||||||||||||||||||| ||||||||| |||||    
T  10495930 ttgattttgatggtaaaattagtatcatttactaaaa 10495894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 306 - 342
Target Start/End: Complemental strand, 15699214 - 15699178
Alignment:
Q  306 ttgattttgatggtaaaattattatcatttattaaaa 342  Q
    ||||||||||||||||||||| ||||||||| |||||    
T  15699214 ttgattttgatggtaaaattaatatcatttactaaaa 15699178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 306 - 342
Target Start/End: Complemental strand, 29074976 - 29074940
Alignment:
Q  306 ttgattttgatggtaaaattattatcatttattaaaa 342  Q
    |||||||| |||||||||||| |||||||||||||||    
T  29074976 ttgattttaatggtaaaattaatatcatttattaaaa 29074940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 306 - 342
Target Start/End: Original strand, 32826017 - 32826053
Alignment:
Q  306 ttgattttgatggtaaaattattatcatttattaaaa 342  Q
    ||||||||||||||||||||| ||||||||| |||||    
T  32826017 ttgattttgatggtaaaattagtatcatttactaaaa 32826053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 306 - 342
Target Start/End: Original strand, 40144873 - 40144909
Alignment:
Q  306 ttgattttgatggtaaaattattatcatttattaaaa 342  Q
    ||||||||||||||||||||| ||||||||| |||||    
T  40144873 ttgattttgatggtaaaattaatatcatttactaaaa 40144909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 306 - 342
Target Start/End: Complemental strand, 45331433 - 45331397
Alignment:
Q  306 ttgattttgatggtaaaattattatcatttattaaaa 342  Q
    ||||||||||||||||||||| ||||||||| |||||    
T  45331433 ttgattttgatggtaaaattaatatcatttactaaaa 45331397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 306 - 342
Target Start/End: Original strand, 49224012 - 49224048
Alignment:
Q  306 ttgattttgatggtaaaattattatcatttattaaaa 342  Q
    ||||||||||||||||||||| ||||||||| |||||    
T  49224012 ttgattttgatggtaaaattagtatcatttactaaaa 49224048  T

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Target: chr4 (Bit Score: 47; Significance: 2e-17; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 306 - 396
Target Start/End: Original strand, 38502511 - 38502601
Alignment:
Q  306 ttgattttgatggtaaaattattatcatttattaaaatatttttatcaatcataattgatagaatagttaagttgaacaaaattcaataaa 396  Q
    ||||||||||||||||||||| ||||||||||||||||| |||||| ||| ||| || ||  | ||||||||||| | |||||||||||||    
T  38502511 ttgattttgatggtaaaattagtatcatttattaaaatacttttattaattatagttaatgtagtagttaagttggataaaattcaataaa 38502601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 306 - 396
Target Start/End: Complemental strand, 53412200 - 53412110
Alignment:
Q  306 ttgattttgatggtaaaattattatcatttattaaaatatttttatcaatcataattgatagaatagttaagttgaacaaaattcaataaa 396  Q
    |||||||  |||||||||||| ||||||||| |||||||||||||| ||| ||| ||  | |||||||||||||| |  ||||||||||||    
T  53412200 ttgatttcaatggtaaaattagtatcatttactaaaatatttttattaattatagtttgtggaatagttaagttggatgaaattcaataaa 53412110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 308 - 346
Target Start/End: Complemental strand, 54202289 - 54202251
Alignment:
Q  308 gattttgatggtaaaattattatcatttattaaaatatt 346  Q
    |||||| |||||||||||| |||||||||||||||||||    
T  54202289 gattttaatggtaaaattaatatcatttattaaaatatt 54202251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 306 - 411
Target Start/End: Complemental strand, 6609853 - 6609748
Alignment:
Q  306 ttgattttgatggtaaaattattatcatttattaaaatatttttatcaatcataattgatagaatagttaagttgaacaaaattcaataaacacgaatat 405  Q
    ||||||||||||||||||||| |||||||||  |||| || ||||| |||  |||||  | || ||||||||||| |  ||| |||||||| | || |||    
T  6609853 ttgattttgatggtaaaattagtatcatttacaaaaacatctttattaattgtaattattggagtagttaagttggatgaaactcaataaataagagtat 6609754  T
Q  406 aataat 411  Q
    ||||||    
T  6609753 aataat 6609748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 306 - 351
Target Start/End: Original strand, 26147644 - 26147689
Alignment:
Q  306 ttgattttgatggtaaaattattatcatttattaaaatatttttat 351  Q
    ||||||||||||||||||||| ||||||||| ||||| ||| ||||    
T  26147644 ttgattttgatggtaaaattagtatcatttactaaaacattcttat 26147689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 306 - 351
Target Start/End: Original strand, 32469977 - 32470022
Alignment:
Q  306 ttgattttgatggtaaaattattatcatttattaaaatatttttat 351  Q
    |||||||| |||||||||||| ||||||||||||||| ||| ||||    
T  32469977 ttgattttaatggtaaaattagtatcatttattaaaacattcttat 32470022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 306 - 351
Target Start/End: Original strand, 42616932 - 42616977
Alignment:
Q  306 ttgattttgatggtaaaattattatcatttattaaaatatttttat 351  Q
    |||||||  |||||||||||| ||||||||| ||||||||||||||    
T  42616932 ttgatttcaatggtaaaattaatatcatttactaaaatatttttat 42616977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 306 - 355
Target Start/End: Complemental strand, 54506880 - 54506831
Alignment:
Q  306 ttgattttgatggtaaaattattatcatttattaaaatatttttatcaat 355  Q
    |||||||  |||||||||||| ||||||||||||||||||  ||||||||    
T  54506880 ttgatttcaatggtaaaattaatatcatttattaaaatatcattatcaat 54506831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 306 - 342
Target Start/End: Complemental strand, 3689654 - 3689618
Alignment:
Q  306 ttgattttgatggtaaaattattatcatttattaaaa 342  Q
    ||||||||||||||||||||| ||||||||| |||||    
T  3689654 ttgattttgatggtaaaattagtatcatttactaaaa 3689618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 306 - 342
Target Start/End: Original strand, 11907628 - 11907664
Alignment:
Q  306 ttgattttgatggtaaaattattatcatttattaaaa 342  Q
    ||||||||||||||||||||| ||||||||| |||||    
T  11907628 ttgattttgatggtaaaattagtatcatttactaaaa 11907664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 306 - 342
Target Start/End: Complemental strand, 17114532 - 17114496
Alignment:
Q  306 ttgattttgatggtaaaattattatcatttattaaaa 342  Q
    ||||||||||||||||||||| ||||||||| |||||    
T  17114532 ttgattttgatggtaaaattagtatcatttactaaaa 17114496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 306 - 342
Target Start/End: Original strand, 47773048 - 47773084
Alignment:
Q  306 ttgattttgatggtaaaattattatcatttattaaaa 342  Q
    ||||||||||||||||||||| ||||||||| |||||    
T  47773048 ttgattttgatggtaaaattagtatcatttactaaaa 47773084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 306 - 342
Target Start/End: Original strand, 52859828 - 52859864
Alignment:
Q  306 ttgattttgatggtaaaattattatcatttattaaaa 342  Q
    ||||||||||||||||||||| ||||||||| |||||    
T  52859828 ttgattttgatggtaaaattagtatcatttactaaaa 52859864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 306 - 382
Target Start/End: Original strand, 54477482 - 54477558
Alignment:
Q  306 ttgattttgatggtaaaattattatcatttattaaaatatttttatcaatcataattgatagaatagttaagttgaa 382  Q
    |||||||| |||||||||||| ||||||||| |||||||||||||| |||  || || || || |||||||||||||    
T  54477482 ttgattttaatggtaaaattaatatcatttactaaaatatttttattaattgtagttaatggagtagttaagttgaa 54477558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 306 - 362
Target Start/End: Original strand, 29595750 - 29595806
Alignment:
Q  306 ttgattttgatggtaaaattattatcatttattaaaatatttttatcaatcataatt 362  Q
    |||||||| || ||||||||| ||| |||||||||||||||||||| ||| ||||||    
T  29595750 ttgattttaatagtaaaattaatattatttattaaaatatttttattaattataatt 29595806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 306 - 396
Target Start/End: Complemental strand, 52290985 - 52290895
Alignment:
Q  306 ttgattttgatggtaaaattattatcatttattaaaatatttttatcaatcataattgatagaatagttaagttgaacaaaattcaataaa 396  Q
    ||||||||||||||||||||| || |||||||||||| |   |||| ||| ||| ||  | || ||||||||||||| ||| |||||||||    
T  52290985 ttgattttgatggtaaaattagtaccatttattaaaacagccttattaattatagttagtggagtagttaagttgaataaagttcaataaa 52290895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 306 - 351
Target Start/End: Complemental strand, 45710942 - 45710897
Alignment:
Q  306 ttgattttgatggtaaaattattatcatttattaaaatatttttat 351  Q
    ||||||||||||||||||||| ||||||||| ||||| | ||||||    
T  45710942 ttgattttgatggtaaaattaatatcatttactaaaacacttttat 45710897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 319 - 392
Target Start/End: Original strand, 48541036 - 48541109
Alignment:
Q  319 taaaattattatcatttattaaaatatttttatcaatcataattgatagaatagttaagttgaacaaaattcaa 392  Q
    |||||||| ||||||||||||||||||| |||| |||  |||||  | || |||||||||||||  ||||||||    
T  48541036 taaaattaatatcatttattaaaatattcttattaattgtaattagttgagtagttaagttgaatgaaattcaa 48541109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 306 - 351
Target Start/End: Complemental strand, 54726577 - 54726532
Alignment:
Q  306 ttgattttgatggtaaaattattatcatttattaaaatatttttat 351  Q
    ||||||||||||||||||||| ||||||||| ||||| || |||||    
T  54726577 ttgattttgatggtaaaattaatatcatttactaaaacatctttat 54726532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 306 - 342
Target Start/End: Original strand, 29023989 - 29024025
Alignment:
Q  306 ttgattttgatggtaaaattattatcatttattaaaa 342  Q
    ||||||||||||||||||||| ||||||||| |||||    
T  29023989 ttgattttgatggtaaaattagtatcatttactaaaa 29024025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 306 - 342
Target Start/End: Complemental strand, 37497584 - 37497548
Alignment:
Q  306 ttgattttgatggtaaaattattatcatttattaaaa 342  Q
    ||||||||||||||||||||| ||||||||| |||||    
T  37497584 ttgattttgatggtaaaattagtatcatttactaaaa 37497548  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 310 - 377
Target Start/End: Original strand, 18890580 - 18890647
Alignment:
Q  310 ttttgatggtaaaattattatcatttattaaaatatttttatcaatcataattgatagaatagttaag 377  Q
    |||| |||||||||||| |||||||||||||||||||||||| |||  |||||| | || ||||||||    
T  18890580 ttttaatggtaaaattagtatcatttattaaaatatttttattaattttaattgttggagtagttaag 18890647  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000009; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 306 - 351
Target Start/End: Original strand, 18710131 - 18710176
Alignment:
Q  306 ttgattttgatggtaaaattattatcatttattaaaatatttttat 351  Q
    |||||||| |||||||||||||||| ||||||||| ||||||||||    
T  18710131 ttgattttaatggtaaaattattataatttattaacatatttttat 18710176  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 306 - 396
Target Start/End: Original strand, 32346082 - 32346172
Alignment:
Q  306 ttgattttgatggtaaaattattatcatttattaaaatatttttatcaatcataattgatagaatagttaagttgaacaaaattcaataaa 396  Q
    |||||||  |||||||||||| |||||| || ||||||| | |||| ||| ||||||  | || |||||||||||||  ||||||||||||    
T  32346082 ttgatttcaatggtaaaattaatatcatctactaaaatactcttattaattataattagtggagtagttaagttgaatgaaattcaataaa 32346172  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 306 - 351
Target Start/End: Complemental strand, 83484 - 83439
Alignment:
Q  306 ttgattttgatggtaaaattattatcatttattaaaatatttttat 351  Q
    ||||||||||||||||||||| ||||||||| ||||| ||| ||||    
T  83484 ttgattttgatggtaaaattagtatcatttactaaaacattcttat 83439  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 306 - 351
Target Start/End: Original strand, 17610568 - 17610613
Alignment:
Q  306 ttgattttgatggtaaaattattatcatttattaaaatatttttat 351  Q
    |||||||| |||||||||||| ||| ||||||||||||||| ||||    
T  17610568 ttgattttaatggtaaaattagtataatttattaaaatattcttat 17610613  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 306 - 342
Target Start/End: Original strand, 3178234 - 3178270
Alignment:
Q  306 ttgattttgatggtaaaattattatcatttattaaaa 342  Q
    ||||||||||||||||||||| ||||||||| |||||    
T  3178234 ttgattttgatggtaaaattaatatcatttactaaaa 3178270  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 306 - 342
Target Start/End: Original strand, 21760014 - 21760050
Alignment:
Q  306 ttgattttgatggtaaaattattatcatttattaaaa 342  Q
    ||||||||||||||||||||| ||||||||| |||||    
T  21760014 ttgattttgatggtaaaattagtatcatttaataaaa 21760050  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 306 - 342
Target Start/End: Complemental strand, 27921087 - 27921051
Alignment:
Q  306 ttgattttgatggtaaaattattatcatttattaaaa 342  Q
    |||||||| |||||||||||| |||||||||||||||    
T  27921087 ttgattttaatggtaaaattagtatcatttattaaaa 27921051  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 306 - 342
Target Start/End: Complemental strand, 38391847 - 38391811
Alignment:
Q  306 ttgattttgatggtaaaattattatcatttattaaaa 342  Q
    ||||||||||||||||||||| ||||||||| |||||    
T  38391847 ttgattttgatggtaaaattagtatcatttactaaaa 38391811  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 306 - 342
Target Start/End: Complemental strand, 42935760 - 42935724
Alignment:
Q  306 ttgattttgatggtaaaattattatcatttattaaaa 342  Q
    ||||||||||||||||||||| ||||||||| |||||    
T  42935760 ttgattttgatggtaaaattaatatcatttactaaaa 42935724  T

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Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 306 - 342
Target Start/End: Complemental strand, 43874022 - 43873986
Alignment:
Q  306 ttgattttgatggtaaaattattatcatttattaaaa 342  Q
    ||||||||||||||||||||| ||||||||| |||||    
T  43874022 ttgattttgatggtaaaattaatatcatttactaaaa 43873986  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000004; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 306 - 342
Target Start/End: Original strand, 2767315 - 2767351
Alignment:
Q  306 ttgattttgatggtaaaattattatcatttattaaaa 342  Q
    ||||||||||||||||||||| |||||||||||||||    
T  2767315 ttgattttgatggtaaaattagtatcatttattaaaa 2767351  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 319 - 362
Target Start/End: Complemental strand, 30381814 - 30381771
Alignment:
Q  319 taaaattattatcatttattaaaatatttttatcaatcataatt 362  Q
    |||||||||||| |||||||||||||||||||| ||| ||||||    
T  30381814 taaaattattattatttattaaaatatttttattaattataatt 30381771  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 306 - 396
Target Start/End: Complemental strand, 31271113 - 31271023
Alignment:
Q  306 ttgattttgatggtaaaattattatcatttattaaaatatttttatcaatcataattgatagaatagttaagttgaacaaaattcaataaa 396  Q
    |||||||| |||||||||||| |||||| || ||||||| | |||| ||| ||| ||  | || ||||||||||| | |||||||||||||    
T  31271113 ttgattttaatggtaaaattaatatcatatactaaaatactcttattaattatagttagtggagtagttaagttggataaaattcaataaa 31271023  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 309 - 382
Target Start/End: Original strand, 4924094 - 4924167
Alignment:
Q  309 attttgatggtaaaattattatcatttattaaaatatttttatcaatcataattgatagaatagttaagttgaa 382  Q
    ||||| |||||||||||| ||| ||||| |||||||| ||||| |||  || || ||||| |||||||||||||    
T  4924094 attttaatggtaaaattagtattatttactaaaatatctttattaattgtagttaatagagtagttaagttgaa 4924167  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 306 - 342
Target Start/End: Original strand, 5053177 - 5053213
Alignment:
Q  306 ttgattttgatggtaaaattattatcatttattaaaa 342  Q
    ||||||||||||||||||||| ||||||||| |||||    
T  5053177 ttgattttgatggtaaaattaatatcatttactaaaa 5053213  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 306 - 342
Target Start/End: Complemental strand, 13335308 - 13335272
Alignment:
Q  306 ttgattttgatggtaaaattattatcatttattaaaa 342  Q
    ||||||||||||||||||||| ||||||||| |||||    
T  13335308 ttgattttgatggtaaaattagtatcatttagtaaaa 13335272  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 306 - 342
Target Start/End: Original strand, 22771859 - 22771895
Alignment:
Q  306 ttgattttgatggtaaaattattatcatttattaaaa 342  Q
    ||||||||||||||||||||| | |||||||||||||    
T  22771859 ttgattttgatggtaaaattagtgtcatttattaaaa 22771895  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 306 - 342
Target Start/End: Complemental strand, 36967453 - 36967417
Alignment:
Q  306 ttgattttgatggtaaaattattatcatttattaaaa 342  Q
    ||||||||||||||||||||| ||||||||| |||||    
T  36967453 ttgattttgatggtaaaattaatatcatttactaaaa 36967417  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000006; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 318 - 396
Target Start/End: Original strand, 17346395 - 17346473
Alignment:
Q  318 gtaaaattattatcatttattaaaatatttttatcaatcataattgatagaatagttaagttgaacaaaattcaataaa 396  Q
    ||||||||| |||||||||||||||||||||||| |||  || ||  | || ||||||||||| |  ||||||||||||    
T  17346395 gtaaaattaatatcatttattaaaatatttttattaattgtagttagtggagtagttaagttggaagaaattcaataaa 17346473  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 306 - 342
Target Start/End: Complemental strand, 16463781 - 16463745
Alignment:
Q  306 ttgattttgatggtaaaattattatcatttattaaaa 342  Q
    ||||||||||||||||||||| ||||||||| |||||    
T  16463781 ttgattttgatggtaaaattagtatcatttactaaaa 16463745  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 319 - 351
Target Start/End: Original strand, 41220980 - 41221012
Alignment:
Q  319 taaaattattatcatttattaaaatatttttat 351  Q
    |||||||| ||||||||||||||||||||||||    
T  41220980 taaaattagtatcatttattaaaatatttttat 41221012  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000009; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 306 - 346
Target Start/End: Original strand, 4582003 - 4582043
Alignment:
Q  306 ttgattttgatggtaaaattattatcatttattaaaatatt 346  Q
    |||||||| |||||||||||| ||||||||| |||||||||    
T  4582003 ttgattttaatggtaaaattaatatcatttactaaaatatt 4582043  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 306 - 342
Target Start/End: Complemental strand, 6802023 - 6801987
Alignment:
Q  306 ttgattttgatggtaaaattattatcatttattaaaa 342  Q
    ||||||||||||||||||||| ||||||||| |||||    
T  6802023 ttgattttgatggtaaaattaatatcatttactaaaa 6801987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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