View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1369_low_61 (Length: 307)
Name: NF1369_low_61
Description: NF1369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1369_low_61 |
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Alignment Details
Target: chr2 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 14 - 278
Target Start/End: Complemental strand, 7670851 - 7670587
Alignment:
| Q |
14 |
agacgctcaaaagatggatgaaaaatgaagaattggtagagagaacatgataatagagatggttatggaggaaaagatgacgtagaggatatgattattt |
113 |
Q |
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| T |
7670851 |
agacgctcaatagatggatgaaaaatgaagaattggtagagagaacatgataatagagatggttatggaggaaaagatgacgtagatgatatgattattt |
7670752 |
T |
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| Q |
114 |
atttatctctaccattttacggatctctttctaccgtattacagatctgataatttgttaccaattcacaataaacaaacaattatgcatgtgcatgaaa |
213 |
Q |
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| T |
7670751 |
atttatctctaccattttacggatctctttctaccgtattacagatatgataatttgttaccaattcacaataaacaaacaattatgcatgtgcatgaaa |
7670652 |
T |
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| Q |
214 |
aagtgattgtatggtggaattggggtcaaatccgtaacatatcatagatagcgttgaagagttat |
278 |
Q |
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| T |
7670651 |
aagtgattgtatggtggaattggggtcaaatccgtaacatatcatagatggcgttaaagagttat |
7670587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 31 - 278
Target Start/End: Original strand, 45792332 - 45792579
Alignment:
| Q |
31 |
atgaaaaatgaagaattggtagagagaacatgataatagagatggttatggaggaaaagatgacgtagaggatatgattatttatttatctctaccattt |
130 |
Q |
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| T |
45792332 |
atgaaaaatgaagaattggtagagagaacatgataatagagatggtcatggaggaaaagatgacgtagatgatatgattatttatttatctctaccatgt |
45792431 |
T |
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| Q |
131 |
tacggatctctttctaccgtattacagatctgataatttgttaccaattcacaataaacaaacaattatgcatgtgcatgaaaaagtgattgtatggtgg |
230 |
Q |
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| T |
45792432 |
tacggatctctttctaccgtattacagatctaataatttgttatcaattcacaacgaacaaacaattatgcaggtgcaggaaaaagtgattgtatggtgg |
45792531 |
T |
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| Q |
231 |
aattggggtcaaatccgtaacatatcatagatagcgttgaagagttat |
278 |
Q |
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| T |
45792532 |
aattggggtcaaatctgtaatagatcatagatggcgttgaagagttat |
45792579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 20 - 128
Target Start/End: Complemental strand, 40029270 - 40029161
Alignment:
| Q |
20 |
tcaaaagatggatgaaaaatgaagaattggtagagagaacatgataatagagatggttatggaggaaaa-gatgacgtagaggatatgattatttattta |
118 |
Q |
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| T |
40029270 |
tcaaaagatggaagaaaaaggaataattggtagagagaacatgataatagagatagttatggaggaaaatgttgaggtagaggatctgatgatcgatttc |
40029171 |
T |
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| Q |
119 |
tctctaccat |
128 |
Q |
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| T |
40029170 |
tctctaccat |
40029161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 143 - 277
Target Start/End: Complemental strand, 40029168 - 40029035
Alignment:
| Q |
143 |
tctaccgtattacagatctgataatttgttaccaattcacaataaacaaacaattatgcatgtgcatgaaaaagtgattgtatggtggaattggggtcaa |
242 |
Q |
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|||||| | ||| |||||| |||| ||||||||||||||||| ||||||||||||| | ||||| | ||||||||||||||| | |||||||||| ||| |
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| T |
40029168 |
tctaccatgttatagatctaataaattgttaccaattcacaacaaacaaacaattaagtatgtgtaggaaaaagtgattgtaggatggaattgggatcag |
40029069 |
T |
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| Q |
243 |
atccgtaacatatcatagatagcgttgaagagtta |
277 |
Q |
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| T |
40029068 |
at-cgtaacaaatcatggatggtattgaagagtta |
40029035 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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