View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1369_low_65 (Length: 292)
Name: NF1369_low_65
Description: NF1369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1369_low_65 |
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Alignment Details
Target: chr4 (Bit Score: 89; Significance: 6e-43; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 64 - 236
Target Start/End: Original strand, 26594085 - 26594258
Alignment:
| Q |
64 |
ccaccgtcactaacctccaatgccgccatcaccatcgccggtcaccgccatcaccaatgtcacctgcgttcgtccttcgccaccaccggtgttttggttg |
163 |
Q |
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| T |
26594085 |
ccaccatcactaacctccatcgccgccatcaccatcgccggtcaccgccatctccaacgtcacctgcgttcgtccttcgccaccaccggtgttttggttg |
26594184 |
T |
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| Q |
164 |
-nnnnnnnccgtcaggtatacgccgacacgtcggatctacgccgtcgttacccttttgaattttcagccgtctc |
236 |
Q |
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| T |
26594185 |
ttttttttccttcagatattcgccggcacgtcggatctacgtcgccatttcccttttgaattttcggccgtctc |
26594258 |
T |
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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 93 - 163
Target Start/End: Original strand, 47952119 - 47952189
Alignment:
| Q |
93 |
caccatcgccggtcaccgccatcaccaatgtcacctgcgttcgtccttcgccaccaccggtgttttggttg |
163 |
Q |
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||||||||| ||||||||| |||||| | |||||||||||||||||||| | |||| |||||||||||||| |
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| T |
47952119 |
caccatcgctggtcaccgcaatcaccgacgtcacctgcgttcgtccttctctaccatcggtgttttggttg |
47952189 |
T |
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