View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1369_low_70 (Length: 255)

Name: NF1369_low_70
Description: NF1369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1369_low_70
NF1369_low_70
[»] chr8 (2 HSPs)
chr8 (34-173)||(2613172-2613311)
chr8 (189-221)||(2613121-2613153)
[»] chr3 (2 HSPs)
chr3 (94-172)||(32010164-32010242)
chr3 (128-172)||(46358008-46358052)
[»] chr1 (6 HSPs)
chr1 (121-166)||(10605099-10605144)
chr1 (92-172)||(10785087-10785167)
chr1 (128-172)||(12636085-12636129)
chr1 (121-171)||(34159047-34159097)
chr1 (128-172)||(11439646-11439690)
chr1 (99-171)||(18844908-18844979)
[»] chr5 (3 HSPs)
chr5 (95-171)||(17853106-17853182)
chr5 (128-172)||(7194927-7194971)
chr5 (128-171)||(8297881-8297924)
[»] scaffold0002 (1 HSPs)
scaffold0002 (129-172)||(426554-426597)
[»] chr6 (2 HSPs)
chr6 (128-171)||(3880239-3880282)
chr6 (118-171)||(4043344-4043397)
[»] chr4 (4 HSPs)
chr4 (95-171)||(12296552-12296627)
chr4 (94-166)||(19814849-19814921)
chr4 (121-169)||(42719560-42719608)
chr4 (130-171)||(28377903-28377944)
[»] chr2 (5 HSPs)
chr2 (99-171)||(44594060-44594131)
chr2 (128-172)||(1269862-1269906)
chr2 (128-172)||(4975156-4975200)
chr2 (128-172)||(4993064-4993108)
chr2 (128-172)||(33533370-33533414)
[»] scaffold0119 (1 HSPs)
scaffold0119 (128-172)||(41796-41840)
[»] chr7 (4 HSPs)
chr7 (128-172)||(1321203-1321247)
chr7 (128-172)||(6726045-6726089)
chr7 (95-171)||(9427706-9427781)
chr7 (128-172)||(44755978-44756022)


Alignment Details
Target: chr8 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 34 - 173
Target Start/End: Complemental strand, 2613311 - 2613172
Alignment:
Q  34 taggttgtattattggatctttcataatttaactatttcagatggacttattttagaagtttttagtttgtattctctaaatgatccgtctatattcgtc 133  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |  ||||||||||||    
T  2613311 taggttgtattattggatctttcataatttaactatttcagatggacttattttagaagtttttagtttgtattctctgaatgaccaatctatattcgtc 2613212  T
Q  134 ttgagtagggatctgattgttaaataaaatttgttgtttg 173  Q
    ||||||||||||||||||||||||||||||||| ||||||    
T  2613211 ttgagtagggatctgattgttaaataaaatttgctgtttg 2613172  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 221
Target Start/End: Complemental strand, 2613153 - 2613121
Alignment:
Q  189 tatttcagacttaatttgtttaagagttattta 221  Q
    ||||||||| |||||||||||||||||||||||    
T  2613153 tatttcagatttaatttgtttaagagttattta 2613121  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 94 - 172
Target Start/End: Original strand, 32010164 - 32010242
Alignment:
Q  94 ttttagtttgtattctctaaatgatccgtctatattcgtcttgagtagggatctgattgttaaataaaatttgttgttt 172  Q
    |||||| ||||||||||| ||| | |  ||| | ||||||||||||||||||||| |||||||||||||||||||||||    
T  32010164 ttttaggttgtattctctgaatcaccgatctctgttcgtcttgagtagggatctggttgttaaataaaatttgttgttt 32010242  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 128 - 172
Target Start/End: Complemental strand, 46358052 - 46358008
Alignment:
Q  128 ttcgtcttgagtagggatctgattgttaaataaaatttgttgttt 172  Q
    ||||||||||| ||||||||| |||||||||||||||||||||||    
T  46358052 ttcgtcttgagcagggatctggttgttaaataaaatttgttgttt 46358008  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 121 - 166
Target Start/End: Original strand, 10605099 - 10605144
Alignment:
Q  121 gtctatattcgtcttgagtagggatctgattgttaaataaaatttg 166  Q
    |||| ||||||||||||| |||||||||||||||||||||||||||    
T  10605099 gtctctattcgtcttgagcagggatctgattgttaaataaaatttg 10605144  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 92 - 172
Target Start/End: Complemental strand, 10785167 - 10785087
Alignment:
Q  92 gtttttagtttgtattctctaaatgatccgtctatattcgtcttgagtagggatctgattgttaaataaaatttgttgttt 172  Q
    |||||||||||||||||||    | | |||||| ||||||||||||| ||||||||| ||||||||| ||||||| |||||    
T  10785167 gtttttagtttgtattctcagttttacccgtctctattcgtcttgagcagggatctggttgttaaatgaaatttgatgttt 10785087  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 128 - 172
Target Start/End: Complemental strand, 12636129 - 12636085
Alignment:
Q  128 ttcgtcttgagtagggatctgattgttaaataaaatttgttgttt 172  Q
    ||||||||||||||||| | ||| |||||||||||||||||||||    
T  12636129 ttcgtcttgagtagggacccgatagttaaataaaatttgttgttt 12636085  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 171
Target Start/End: Original strand, 34159047 - 34159097
Alignment:
Q  121 gtctatattcgtcttgagtagggatctgattgttaaataaaatttgttgtt 171  Q
    |||| |||| |||||||| ||||||||||||||| |||||| |||||||||    
T  34159047 gtctctatttgtcttgagcagggatctgattgtttaataaattttgttgtt 34159097  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 172
Target Start/End: Complemental strand, 11439690 - 11439646
Alignment:
Q  128 ttcgtcttgagtagggatctgattgttaaataaaatttgttgttt 172  Q
    ||||||||||| || |||||| ||||| |||||||||||||||||    
T  11439690 ttcgtcttgagcagagatctggttgtttaataaaatttgttgttt 11439646  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 171
Target Start/End: Complemental strand, 18844979 - 18844908
Alignment:
Q  99 gtttgtattctctaaatgatccgtctatattcgtcttgagtagggatctgattgttaaataaaatttgttgtt 171  Q
    ||||||||| ||| ||| ||| |||||| ||||| ||||||||||||| | || || ||||||||||||||||    
T  18844979 gtttgtattatctcaattatcagtctatgttcgttttgagtagggatccggtt-tttaataaaatttgttgtt 18844908  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 95 - 171
Target Start/End: Complemental strand, 17853182 - 17853106
Alignment:
Q  95 tttagtttgtattctctaaatgatccgtctatattcgtcttgagtagggatctgattgttaaataaaatttgttgtt 171  Q
    ||||||||||||| ||| ||| | | || ||||||| ||||||| ||||||||| || |||||||||||||||||||    
T  17853182 tttagtttgtattttctgaatcaccggtttatattcatcttgagcagggatctggtttttaaataaaatttgttgtt 17853106  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 128 - 172
Target Start/End: Complemental strand, 7194971 - 7194927
Alignment:
Q  128 ttcgtcttgagtagggatctgattgttaaataaaatttgttgttt 172  Q
    ||||||||||||||||||||| ||||| ||||||||||| |||||    
T  7194971 ttcgtcttgagtagggatctggttgtttaataaaatttgctgttt 7194927  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 128 - 171
Target Start/End: Original strand, 8297881 - 8297924
Alignment:
Q  128 ttcgtcttgagtagggatctgattgttaaataaaatttgttgtt 171  Q
    |||||||||||||| |||||||||||| ||||||||||| ||||    
T  8297881 ttcgtcttgagtagagatctgattgttcaataaaatttgctgtt 8297924  T

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Target: scaffold0002 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 129 - 172
Target Start/End: Complemental strand, 426597 - 426554
Alignment:
Q  129 tcgtcttgagtagggatctgattgttaaataaaatttgttgttt 172  Q
    ||||||||||||||||||||||| |||||||||||||| |||||    
T  426597 tcgtcttgagtagggatctgatttttaaataaaatttgctgttt 426554  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 128 - 171
Target Start/End: Complemental strand, 3880282 - 3880239
Alignment:
Q  128 ttcgtcttgagtagggatctgattgttaaataaaatttgttgtt 171  Q
    ||||||||||| ||||||||||||||| ||||||||||||||||    
T  3880282 ttcgtcttgagcagggatctgattgtttaataaaatttgttgtt 3880239  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 118 - 171
Target Start/End: Complemental strand, 4043397 - 4043344
Alignment:
Q  118 tccgtctatattcgtcttgagtagggatctgattgttaaataaaatttgttgtt 171  Q
    ||||||| ||||||||||||| || ||| ||||| |||||||||||||| ||||    
T  4043397 tccgtctttattcgtcttgagcagagatttgatttttaaataaaatttgctgtt 4043344  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 95 - 171
Target Start/End: Original strand, 12296552 - 12296627
Alignment:
Q  95 tttagtttgtattctctaaatgatccgtctatattcgtcttgagtagggatctgattgttaaataaaatttgttgtt 171  Q
    ||||||||||||||||| ||| ||| |||| ||||||| ||||| || |||||| || |||||||||||||| ||||    
T  12296552 tttagtttgtattctctgaatcatcggtctctattcgttttgagcagagatctggtt-ttaaataaaatttgctgtt 12296627  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 94 - 166
Target Start/End: Complemental strand, 19814921 - 19814849
Alignment:
Q  94 ttttagtttgtattctctaaatgatccgtctatattcgtcttgagtagggatctgattgttaaataaaatttg 166  Q
    |||||||||||| |||||   | ||| |||| | ||||||||||| ||||||||| |||||||||||||||||    
T  19814921 ttttagtttgtactctctgttttatcggtctctgttcgtcttgagcagggatctggttgttaaataaaatttg 19814849  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 169
Target Start/End: Original strand, 42719560 - 42719608
Alignment:
Q  121 gtctatattcgtcttgagtagggatctgattgttaaataaaatttgttg 169  Q
    |||| ||||||||||||| |||||| |||||||| ||||||||||||||    
T  42719560 gtctctattcgtcttgagcagggatttgattgtttaataaaatttgttg 42719608  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 130 - 171
Target Start/End: Original strand, 28377903 - 28377944
Alignment:
Q  130 cgtcttgagtagggatctgattgttaaataaaatttgttgtt 171  Q
    |||||||||||||||| || || |||||||||||||||||||    
T  28377903 cgtcttgagtagggatttggtttttaaataaaatttgttgtt 28377944  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 171
Target Start/End: Original strand, 44594060 - 44594131
Alignment:
Q  99 gtttgtattctctaaatgatccgtctatattcgtcttgagtagggatctgattgttaaataaaatttgttgtt 171  Q
    ||||||||||||| ||| ||| |||||| ||||| ||||||||||||||| || || | ||||||||||||||    
T  44594060 gtttgtattctctgaattatcagtctatgttcgttttgagtagggatctggtt-tttattaaaatttgttgtt 44594131  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 172
Target Start/End: Original strand, 1269862 - 1269906
Alignment:
Q  128 ttcgtcttgagtagggatctgattgttaaataaaatttgttgttt 172  Q
    ||||||||||  || ||| ||||||||||||||||||||||||||    
T  1269862 ttcgtcttgaacagagatttgattgttaaataaaatttgttgttt 1269906  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 172
Target Start/End: Original strand, 4975156 - 4975200
Alignment:
Q  128 ttcgtcttgagtagggatctgattgttaaataaaatttgttgttt 172  Q
    ||||||||||| || || ||||| |||||||||||||||||||||    
T  4975156 ttcgtcttgagcagagacctgatggttaaataaaatttgttgttt 4975200  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 172
Target Start/End: Original strand, 4993064 - 4993108
Alignment:
Q  128 ttcgtcttgagtagggatctgattgttaaataaaatttgttgttt 172  Q
    ||||||||||| || || ||||| |||||||||||||||||||||    
T  4993064 ttcgtcttgagcagagacctgatggttaaataaaatttgttgttt 4993108  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 172
Target Start/End: Complemental strand, 33533414 - 33533370
Alignment:
Q  128 ttcgtcttgagtagggatctgattgttaaataaaatttgttgttt 172  Q
    ||||||||||| || ||||||  ||||||||||||||||||||||    
T  33533414 ttcgtcttgagcagagatctggctgttaaataaaatttgttgttt 33533370  T

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Target: scaffold0119 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 172
Target Start/End: Complemental strand, 41840 - 41796
Alignment:
Q  128 ttcgtcttgagtagggatctgattgttaaataaaatttgttgttt 172  Q
    ||||||||||  || ||| ||||||||||||||||||||||||||    
T  41840 ttcgtcttgaacagagatttgattgttaaataaaatttgttgttt 41796  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 172
Target Start/End: Original strand, 1321203 - 1321247
Alignment:
Q  128 ttcgtcttgagtagggatctgattgttaaataaaatttgttgttt 172  Q
    |||||||||||||| ||| || ||||| |||||||||||||||||    
T  1321203 ttcgtcttgagtagagatgtggttgtttaataaaatttgttgttt 1321247  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 172
Target Start/End: Complemental strand, 6726089 - 6726045
Alignment:
Q  128 ttcgtcttgagtagggatctgattgttaaataaaatttgttgttt 172  Q
    ||||||||||| || |||||| ||||| |||||||||||||||||    
T  6726089 ttcgtcttgagcagagatctggttgtttaataaaatttgttgttt 6726045  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 171
Target Start/End: Complemental strand, 9427781 - 9427706
Alignment:
Q  95 tttagtttgtattctctaaatgatccgtctatattcgtcttgagtagggatctgattgttaaataaaatttgttgtt 171  Q
    ||||||||||||||||||||| | |  ||| | ||||||||||| | ||||||| || |||||| ||||||||||||    
T  9427781 tttagtttgtattctctaaatcaccgatctctgttcgtcttgagcaaggatctggtttttaaat-aaatttgttgtt 9427706  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 172
Target Start/End: Original strand, 44755978 - 44756022
Alignment:
Q  128 ttcgtcttgagtagggatctgattgttaaataaaatttgttgttt 172  Q
    ||||||||||| ||||||||  ||||| |||||||||||||||||    
T  44755978 ttcgtcttgagcagggatctagttgtttaataaaatttgttgttt 44756022  T

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