View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1369_low_75 (Length: 243)
Name: NF1369_low_75
Description: NF1369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1369_low_75 |
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Alignment Details
Target: chr4 (Bit Score: 180; Significance: 3e-97; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 55674656 - 55674864
Alignment:
| Q |
1 |
accaaacaagttcagttaagaaaggtattttccaaagatcattgagacaataaattgcatatagaaagtgttagaatgaaatccatatatttatattagg |
100 |
Q |
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| T |
55674656 |
accaaacaagttcagttaagaaaggtattttccaaagatcattgagacaataaattgcatatagaaagtgttata------tccatatatttatattagg |
55674749 |
T |
|
| Q |
101 |
attagaatcataaattaggatttaaataagaaaattgtatcttattataaatagagatgagtgtggtcagaaatcac-aaaatcaacatagtatatatga |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
55674750 |
attagaatcataaattaggatttaaataagaaaattgtatcttattataaatagagatgagtgtggtcagaaatcacaaaaatcaacatagtatatatga |
55674849 |
T |
|
| Q |
200 |
gaataggttcgttct |
214 |
Q |
| |
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||||||||||||||| |
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| T |
55674850 |
gaataggttcgttct |
55674864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 123
Target Start/End: Complemental strand, 20699399 - 20699355
Alignment:
| Q |
79 |
aaatccatatatttatattaggattagaatcataaattaggattt |
123 |
Q |
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|||||||||||| | ||||||||||||||||||| ||||| |||| |
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|
| T |
20699399 |
aaatccatatatatttattaggattagaatcatagattagtattt |
20699355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 79 - 135
Target Start/End: Complemental strand, 19705263 - 19705206
Alignment:
| Q |
79 |
aaatccatatatttat-attaggattagaatcataaattaggatttaaataagaaaat |
135 |
Q |
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| T |
19705263 |
aaatccatatatttattatcagcattagaatcataaattaggatttgaattagaaaat |
19705206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 123
Target Start/End: Complemental strand, 43792711 - 43792661
Alignment:
| Q |
74 |
gaatgaaatccatatatttat-attaggattagaatcataaattaggattt |
123 |
Q |
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|||| |||||||||||||||| |||||||||| ||||||| |||||||||| |
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| T |
43792711 |
gaatcaaatccatatatttattattaggattaaaatcatagattaggattt |
43792661 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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