View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1369_low_77 (Length: 239)
Name: NF1369_low_77
Description: NF1369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1369_low_77 |
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| [»] chr5 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 12 - 239
Target Start/End: Complemental strand, 13653302 - 13653075
Alignment:
| Q |
12 |
atcataggcacaccacaaaccacactctccaaagtagaattccatccactatgtgtcaaaaaagcaccaattgcctcatgtgacaaaacttcctcttgtg |
111 |
Q |
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| T |
13653302 |
atcataggcacaccacaaaccacactctccaaagtagaattccatccactatgtgtcaaaaaagcaccaattgccttatgtgacaaaacttcctcttgtg |
13653203 |
T |
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| Q |
112 |
gagcccactccacaatcaaacctctctccttagtagtcctttccttaagttcttttattagtgttttttcttgtaccatgtttggtctaatcacccacaa |
211 |
Q |
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| T |
13653202 |
gagcccactccacaatcaaacctttctccttactagtcccttcctcaagttcttttattagtcttttttcttgtaccatgtttggtctaatcacccacaa |
13653103 |
T |
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| Q |
212 |
gaatgcttttttgctgtttaacaaaccg |
239 |
Q |
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| T |
13653102 |
gaatgcttttttgctgttcaacaaaccg |
13653075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 11 - 239
Target Start/End: Complemental strand, 13658776 - 13658548
Alignment:
| Q |
11 |
tatcataggcacaccacaaaccacactctccaaagtagaattccatccactatgtgtcaaaaaagcaccaattgcctcatgtgacaaaacttcctcttgt |
110 |
Q |
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| T |
13658776 |
tatcataggcacaccacaaaccacactctccaaagtagaattccatccactatgtgtcaaaaaggcaccaattgctttgtgtgacaaaacttcctcttgt |
13658677 |
T |
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| Q |
111 |
ggagcccactccacaatcaaacctctctccttagtagtcctttccttaagttcttttattagtgttttttcttgtaccatgtttggtctaatcacccaca |
210 |
Q |
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| T |
13658676 |
ggaacccaccccacaatcatccctttctctttagtagtcccttcctcaagctccttcaatagtcctttttcttgtaccatgtttggcctaatcacccaca |
13658577 |
T |
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| Q |
211 |
agaatgcttttttgctgtttaacaaaccg |
239 |
Q |
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| T |
13658576 |
aaaatggttttttgctattcaataaaccg |
13658548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 11 - 208
Target Start/End: Complemental strand, 13648248 - 13648051
Alignment:
| Q |
11 |
tatcataggcacaccacaaaccacactctccaaagtagaattccatccactatgtgtcaaaaaagcaccaattgcctcatgtgacaaaacttcctcttgt |
110 |
Q |
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| T |
13648248 |
tatcataggcacaccacaaaccacactttccaaagttgaattccacccattatgtgtcaaaaaagcaccaattgccttatgtgacaaaacttcctcttgt |
13648149 |
T |
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| Q |
111 |
ggagcccactccacaatcaaacctctctccttagtagtcctttccttaagttcttttattagtgttttttcttgtaccatgtttggtctaatcaccca |
208 |
Q |
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| T |
13648148 |
gggacccacccaacaatcaaacctttttccttacgagtcccttcctcaagctcacttaataatcctttttcttgtaccatgtttggcctaatcaccca |
13648051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 48 - 97
Target Start/End: Original strand, 20156862 - 20156911
Alignment:
| Q |
48 |
gaattccatccactatgtgtcaaaaaagcaccaattgcctcatgtgacaa |
97 |
Q |
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| T |
20156862 |
gaattccatccacaatgtgtcaaaaatgcacctattgctttatgtgacaa |
20156911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 84
Target Start/End: Original strand, 894462 - 894534
Alignment:
| Q |
12 |
atcataggcacaccacaaaccacactctccaaagtagaattccatccactatgtgtcaaaaaagcaccaattg |
84 |
Q |
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| T |
894462 |
atcataggcacaccattaaccacactctccaaagttgaaccccaaccacaatgactcaaaaaaccaccaattg |
894534 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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