View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1369_low_78 (Length: 233)

Name: NF1369_low_78
Description: NF1369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1369_low_78
NF1369_low_78
[»] chr8 (4 HSPs)
chr8 (68-222)||(15151308-15151462)
chr8 (70-210)||(19442403-19442543)
chr8 (70-210)||(19578554-19578694)
chr8 (141-214)||(16822006-16822079)
[»] chr2 (7 HSPs)
chr2 (70-216)||(1644616-1644762)
chr2 (70-222)||(17673362-17673514)
chr2 (70-216)||(17628291-17628437)
chr2 (70-222)||(19569582-19569734)
chr2 (70-222)||(37081275-37081427)
chr2 (74-204)||(3563566-3563696)
chr2 (70-163)||(24578685-24578778)
[»] chr4 (3 HSPs)
chr4 (73-213)||(17405099-17405239)
chr4 (70-222)||(2946660-2946812)
chr4 (103-222)||(6136102-6136221)
[»] chr1 (4 HSPs)
chr1 (70-222)||(2900411-2900560)
chr1 (78-222)||(28538506-28538650)
chr1 (70-222)||(27908301-27908453)
chr1 (141-222)||(23971060-23971141)
[»] chr3 (2 HSPs)
chr3 (88-210)||(9021746-9021868)
chr3 (147-199)||(25226627-25226679)
[»] chr5 (4 HSPs)
chr5 (70-215)||(21714326-21714471)
chr5 (70-215)||(13502392-13502537)
chr5 (119-222)||(15023568-15023671)
chr5 (70-215)||(21788240-21788386)
[»] chr7 (2 HSPs)
chr7 (132-222)||(4633993-4634083)
chr7 (141-214)||(32238918-32238991)
[»] chr6 (2 HSPs)
chr6 (133-222)||(27991531-27991620)
chr6 (157-221)||(13627831-13627895)
[»] scaffold0010 (1 HSPs)
scaffold0010 (147-199)||(235750-235802)


Alignment Details
Target: chr8 (Bit Score: 119; Significance: 6e-61; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 68 - 222
Target Start/End: Complemental strand, 15151462 - 15151308
Alignment:
Q  68 atatgttgtctttagttaattaaatttgtcgagtgaagcatagacactggaacatggatcctggcttagagccaattcgttcacattttaaagatttata 167  Q
    |||||||||||||||||||||||| |||||||||||||||||||  |||||| ||||||||| ||||||||||||||||||||||| | || ||||||||    
T  15151462 atatgttgtctttagttaattaaacttgtcgagtgaagcatagattctggaatatggatcctagcttagagccaattcgttcacatatcaatgatttata 15151363  T
Q  168 cttgtgttcttcttgcataatgtcaaatgaaatgtttaatagtctttccgttcat 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  15151362 cttgtgttcttcttgcataatgtcaaatgaaatgtttaatagtcttttcgttcat 15151308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 70 - 210
Target Start/End: Complemental strand, 19442543 - 19442403
Alignment:
Q  70 atgttgtctttagttaattaaatttgtcgagtgaagcatagacactggaacatggatcctggcttagagccaattcgttcacattttaaagatttatact 169  Q
    |||||||||||||||||||||| |||||||||||||   |||| ||||||||||||| ||  |||||||| | ||  ||||||||| ||||||| |||||    
T  19442543 atgttgtctttagttaattaaacttgtcgagtgaagtccagactctggaacatggattctaacttagagctatttgtttcacatttcaaagattcatact 19442444  T
Q  170 tgtgttcttcttgcataatgtcaaatgaaatgtttaatagt 210  Q
    ||||||| | | ||| ||| |||||||||||||||||||||    
T  19442443 tgtgttcatatcgcacaatatcaaatgaaatgtttaatagt 19442403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 70 - 210
Target Start/End: Complemental strand, 19578694 - 19578554
Alignment:
Q  70 atgttgtctttagttaattaaatttgtcgagtgaagcatagacactggaacatggatcctggcttagagccaattcgttcacattttaaagatttatact 169  Q
    |||||||||||||||||||||| |||||||||||||   |||| ||||||||||||| ||  |||||||| | ||  ||||||||| ||||||| |||||    
T  19578694 atgttgtctttagttaattaaacttgtcgagtgaagtccagactctggaacatggattctaacttagagctatttgtttcacatttcaaagattcatact 19578595  T
Q  170 tgtgttcttcttgcataatgtcaaatgaaatgtttaatagt 210  Q
    ||||||| | | ||| ||| |||||||||||||||||||||    
T  19578594 tgtgttcatatcgcacaatatcaaatgaaatgtttaatagt 19578554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 141 - 214
Target Start/End: Complemental strand, 16822079 - 16822006
Alignment:
Q  141 aattcgttcacattttaaagatttatacttgtgttcttcttgcataatgtcaaatgaaatgtttaatagtcttt 214  Q
    |||| ||||||| || || |||| ||||||||||| |||||| | |||||||||||||||||||||||||||||    
T  16822079 aattggttcacacttcaatgattcatacttgtgtttttcttgtacaatgtcaaatgaaatgtttaatagtcttt 16822006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 87; Significance: 8e-42; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 70 - 216
Target Start/End: Complemental strand, 1644762 - 1644616
Alignment:
Q  70 atgttgtctttagttaattaaatttgtcgagtgaagcatagacactggaacatggatcctggcttagagccaattcgttcacattttaaagatttatact 169  Q
    |||||||||||||||||||||| |||||||| ||||  ||||| ||| |||||||||||| ||||||||| |||| |||||||||| ||||||| ||||     
T  1644762 atgttgtctttagttaattaaacttgtcgagcgaagtctagactctgaaacatggatcctagcttagagctaatttgttcacatttcaaagattcatacc 1644663  T
Q  170 tgtgttcttcttgcataatgtcaaatgaaatgtttaatagtctttcc 216  Q
    | || |||||||||| |||||||||||||||||||||||||||||||    
T  1644662 tatgctcttcttgcacaatgtcaaatgaaatgtttaatagtctttcc 1644616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 70 - 222
Target Start/End: Original strand, 17673362 - 17673514
Alignment:
Q  70 atgttgtctttagttaattaaatttgtcgagtgaagcatagacactggaacatggatcctggcttagagccaattcgttcacattttaaagatttatact 169  Q
    |||||| ||||||||||||||| ||||| | | |||||||||| || ||||||||||||| ||||||||| |||| |||||||||| ||||||| || ||    
T  17673362 atgttgcctttagttaattaaacttgtccaataaagcatagactcttgaacatggatcctagcttagagctaattggttcacatttcaaagattcatgct 17673461  T
Q  170 tgtgttcttcttgcataatgtcaaatgaaatgtttaatagtctttccgttcat 222  Q
    ||||||||||||||| || |||||||||||||||| ||||||||||| |||||    
T  17673462 tgtgttcttcttgcacaacgtcaaatgaaatgtttcatagtctttccattcat 17673514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 70 - 216
Target Start/End: Original strand, 17628291 - 17628437
Alignment:
Q  70 atgttgtctttagttaattaaatttgtcgagtgaagcatagacactggaacatggatcctggcttagagccaattcgttcacattttaaagatttatact 169  Q
    |||||| ||||||||||||||| ||||| | | |||||||||| || ||||||||||||| ||||||||| ||||  ||||||||| ||||||| || ||    
T  17628291 atgttgcctttagttaattaaacttgtccaataaagcatagactcttgaacatggatcctagcttagagctaattgattcacatttcaaagattcatgct 17628390  T
Q  170 tgtgttcttcttgcataatgtcaaatgaaatgtttaatagtctttcc 216  Q
    ||||||||||||||| || |||||||||||||||| |||||||||||    
T  17628391 tgtgttcttcttgcacaacgtcaaatgaaatgtttcatagtctttcc 17628437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 70 - 222
Target Start/End: Complemental strand, 19569734 - 19569582
Alignment:
Q  70 atgttgtctttagttaattaaatttgtcgagtgaagcatagacactggaacatggatcctggcttagagccaattcgttcacattttaaagatttatact 169  Q
    |||||||||||||||||||||| | |||||||||| | |||||  | ||||||||||||| |||||||||  ||  ||||||| || ||| ||| ||| |    
T  19569734 atgttgtctttagttaattaaactagtcgagtgaaacctagactttcgaacatggatcctagcttagagctcatcggttcacaattcaaaaattcatatt 19569635  T
Q  170 tgtgttcttcttgcataatgtcaaatgaaatgtttaatagtctttccgttcat 222  Q
    |||||| |||||||| ||||||||||||||||||||||||||||||| |||||    
T  19569634 tgtgtttttcttgcacaatgtcaaatgaaatgtttaatagtctttccattcat 19569582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 70 - 222
Target Start/End: Original strand, 37081275 - 37081427
Alignment:
Q  70 atgttgtctttagttaattaaatttgtcgagtgaagcatagacactggaacatggatcctggcttagagccaattcgttcacattttaaagatttatact 169  Q
    |||||||||||||||| ||||| |||| ||||||||| ||||| | ||| ||||||  ||  |||||||| |||  |||||||||| ||||||| |||||    
T  37081275 atgttgtctttagttagttaaacttgttgagtgaagcctagactccggatcatggactctaacttagagctaatcggttcacatttcaaagattcatact 37081374  T
Q  170 tgtgttcttcttgcataatgtcaaatgaaatgtttaatagtctttccgttcat 222  Q
    ||||||||||||||| ||| | |||| |||||||| |||||||||||||||||    
T  37081375 tgtgttcttcttgcacaatataaaataaaatgtttgatagtctttccgttcat 37081427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 74 - 204
Target Start/End: Complemental strand, 3563696 - 3563566
Alignment:
Q  74 tgtctttagttaattaaatttgtcgagtgaagcatagacactggaacatggatcctggcttagagccaattcgttcacattttaaagatttatacttgtg 173  Q
    |||||||||||||||||| |||||||||||||  ||||  || ||||||||||||| ||||||||| |||| ||| | |||| ||||||| |||||||||    
T  3563696 tgtctttagttaattaaacttgtcgagtgaagtctagagtcttgaacatggatcctagcttagagctaattggtttatatttcaaagattcatacttgtg 3563597  T
Q  174 ttcttcttgcataatgtcaaatgaaatgttt 204  Q
     |||||||| | |||||| ||||||||||||    
T  3563596 ctcttcttgtaaaatgtcgaatgaaatgttt 3563566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 70 - 163
Target Start/End: Complemental strand, 24578778 - 24578685
Alignment:
Q  70 atgttgtctttagttaattaaatttgtcgagtgaagcatagacactggaacatggatcctggcttagagccaattcgttcacattttaaagatt 163  Q
    ||||||||||||||||||||||||||||||||||| | ||||| ||||||||||||| || ||||||||| ||||  ||||||||| |||||||    
T  24578778 atgttgtctttagttaattaaatttgtcgagtgaaacctagactctggaacatggattctagcttagagctaattatttcacatttcaaagatt 24578685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 85; Significance: 1e-40; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 73 - 213
Target Start/End: Original strand, 17405099 - 17405239
Alignment:
Q  73 ttgtctttagttaattaaatttgtcgagtgaagcatagacactggaacatggatcctggcttagagccaattcgttcacattttaaagatttatacttgt 172  Q
    ||||||||||||||||||| |||||||||||||| ||||   |||||||||||||||  |||||||| |||| ||||||| || ||| ||| ||||||||    
T  17405099 ttgtctttagttaattaaacttgtcgagtgaagcctagattttggaacatggatcctaccttagagctaattggttcacacttaaaaaattcatacttgt 17405198  T
Q  173 gttcttcttgcataatgtcaaatgaaatgtttaatagtctt 213  Q
    |||||||||||| ||||||||||||||||||||||||||||    
T  17405199 gttcttcttgcacaatgtcaaatgaaatgtttaatagtctt 17405239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 70 - 222
Target Start/End: Complemental strand, 2946812 - 2946660
Alignment:
Q  70 atgttgtctttagttaattaaatttgtcgagtgaagcatagacactggaacatggatcctggcttagagccaattcgttcacattttaaagatttatact 169  Q
    ||||||| |||||||||||||| |||||||||||||| ||||| || |||||| |||| | | ||||||| |||| | || ||||| ||||||| ||||     
T  2946812 atgttgtttttagttaattaaaattgtcgagtgaagcctagactctagaacatagatcatagtttagagctaattggctcgcatttcaaagattcataca 2946713  T
Q  170 tgtgttcttcttgcataatgtcaaatgaaatgtttaatagtctttccgttcat 222  Q
    ||||||||||||||| |||||||||||||||||| |||||||||||| |||||    
T  2946712 tgtgttcttcttgcacaatgtcaaatgaaatgttaaatagtctttccattcat 2946660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 103 - 222
Target Start/End: Complemental strand, 6136221 - 6136102
Alignment:
Q  103 aagcatagacactggaacatggatcctggcttagagccaattcgttcacattttaaagatttatacttgtgttcttcttgcataatgtcaaatgaaatgt 202  Q
    |||| ||||| |||| ||||||||||| ||||||||| ||||  ||||||||| ||||||| |||| ||||||||||||||| ||| |||||||||||||    
T  6136221 aagcctagactctggcacatggatcctagcttagagctaattgattcacatttcaaagattcatacatgtgttcttcttgcacaatatcaaatgaaatgt 6136122  T
Q  203 ttaatagtctttccgttcat 222  Q
    |||||||||||||| |||||    
T  6136121 ttaatagtctttccattcat 6136102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 83; Significance: 2e-39; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 70 - 222
Target Start/End: Complemental strand, 2900560 - 2900411
Alignment:
Q  70 atgttgtctttagttaattaaatttgtcgagtgaagcatagacactggaacatggatcctggcttagagccaattcgttcacattttaaagatttatact 169  Q
    |||||||||||||||||||||| |||||||||||||  |||||  || |||||||||||| ||||||||| |||| |||  ||||| |||||||||||||    
T  2900560 atgttgtctttagttaattaaacttgtcgagtgaagtctagactttgtaacatggatcctagcttagagctaattggttgtcatttcaaagatttatact 2900461  T
Q  170 tgtgttcttcttgcataatgtcaaatgaaatgtttaatagtctttccgttcat 222  Q
    |||||   ||||||| ||||||||||||||||||||||||||||||| |||||    
T  2900460 tgtgt---tcttgcacaatgtcaaatgaaatgtttaatagtctttccattcat 2900411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 78 - 222
Target Start/End: Complemental strand, 28538650 - 28538506
Alignment:
Q  78 tttagttaattaaatttgtcgagtgaagcatagacactggaacatggatcctggcttagagccaattcgttcacattttaaagatttatacttgtgttct 177  Q
    |||||||||||||| ||||| |||||||| ||||| |  ||||||||||||| ||||||||  |||| |||||||||| ||||||| |||||||||||||    
T  28538650 tttagttaattaaacttgtcaagtgaagcctagactcctgaacatggatcctagcttagagttaattggttcacatttcaaagattcatacttgtgttct 28538551  T
Q  178 tcttgcataatgtcaaatgaaatgtttaatagtctttccgttcat 222  Q
    ||| ||| ||||||||||||||||||| ||| ||||||| |||||    
T  28538550 tctagcacaatgtcaaatgaaatgtttcataatctttccattcat 28538506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 70 - 222
Target Start/End: Complemental strand, 27908453 - 27908301
Alignment:
Q  70 atgttgtctttagttaattaaatttgtcgagtgaagcatagacactggaacatggatcctggcttagagccaattcgttcacattttaaagatttatact 169  Q
    |||||||||||||||||||||| |||| ||||||||  ||||   ||||||||||||||| ||||||||| |||| |||||||||| ||| ||| |||||    
T  27908453 atgttgtctttagttaattaaacttgtagagtgaagtctagattttggaacatggatcctagcttagagctaattggttcacatttcaaatattcatact 27908354  T
Q  170 tgtgttcttcttgcataatgtcaaatgaaatgtttaatagtctttccgttcat 222  Q
    ||||||||| ||||| ||||| ||||||||| |||| || ||||||| |||||    
T  27908353 tgtgttcttgttgcacaatgtgaaatgaaatatttattaatctttccattcat 27908301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 141 - 222
Target Start/End: Original strand, 23971060 - 23971141
Alignment:
Q  141 aattcgttcacattttaaagatttatacttgtgttcttcttgcataatgtcaaatgaaatgtttaatagtctttccgttcat 222  Q
    |||| ||||||| || ||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||| ||||||    
T  23971060 aattggttcacacttcaaagattcatacttgtgtttttcttgcacaatgtcaaatgaaatgtttaatagtctttcagttcat 23971141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 88 - 210
Target Start/End: Original strand, 9021746 - 9021868
Alignment:
Q  88 taaatttgtcgagtgaagcatagacactggaacatggatcctggcttagagccaattcgttcacattttaaagatttatacttgtgttcttcttgcataa 187  Q
    |||| |||||||||||||| ||||| |||||||||||||  | ||||||||| |||| ||| |||||| ||||||| |||||||||||||||||||| ||    
T  9021746 taaacttgtcgagtgaagcctagactctggaacatggattatagcttagagctaattggtttacatttcaaagattcatacttgtgttcttcttgcacaa 9021845  T
Q  188 tgtcaaatgaaatgtttaatagt 210  Q
    |||||||||||||||||||||||    
T  9021846 tgtcaaatgaaatgtttaatagt 9021868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 147 - 199
Target Start/End: Complemental strand, 25226679 - 25226627
Alignment:
Q  147 ttcacattttaaagatttatacttgtgttcttcttgcataatgtcaaatgaaa 199  Q
    ||||||||| ||||||| ||||| |||||||| ||||| ||||||||||||||    
T  25226679 ttcacatttcaaagattcatactcgtgttctttttgcacaatgtcaaatgaaa 25226627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 6e-27; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 70 - 215
Target Start/End: Complemental strand, 21714471 - 21714326
Alignment:
Q  70 atgttgtctttagttaattaaatttgtcgagtgaagcatagacactggaacatggatcctggcttagagccaattcgttcacattttaaagatttatact 169  Q
    ||||||||||| |||||||||| |||| ||||||||| |||||  |||||||   |||||  ||||| || |||| |||||||||| ||| ||| |||||    
T  21714471 atgttgtctttcgttaattaaacttgtagagtgaagcctagactttggaacacatatcctaacttagggctaattggttcacatttcaaatattcatact 21714372  T
Q  170 tgtgttcttcttgcataatgtcaaatgaaatgtttaatagtctttc 215  Q
    |||||||||| |||| ||| ||||||||||| ||||||||||||||    
T  21714371 tgtgttcttcatgcacaatatcaaatgaaatatttaatagtctttc 21714326  T

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Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 70 - 215
Target Start/End: Original strand, 13502392 - 13502537
Alignment:
Q  70 atgttgtctttagttaattaaatttgtcgagtgaagcatagacactggaacatggatcctggcttagagccaattcgttcacattttaaagatttatact 169  Q
    |||||||||||||||||||||| |||| ||||||||| |||||  |||||||   ||||| |||||| || ||||  ||||||||| ||| ||| |||||    
T  13502392 atgttgtctttagttaattaaacttgtagagtgaagcctagactttggaacacatatcctagcttagggctaattgattcacatttcaaatattcatact 13502491  T
Q  170 tgtgttcttcttgcataatgtcaaatgaaatgtttaatagtctttc 215  Q
    ||||||||||||||| ||| || ||| |||| |||||||| |||||    
T  13502492 tgtgttcttcttgcacaatatcgaataaaatatttaatagcctttc 13502537  T

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Target: chr5; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 119 - 222
Target Start/End: Original strand, 15023568 - 15023671
Alignment:
Q  119 acatggatcctggcttagagccaattcgttcacattttaaagatttatacttgtgttcttcttgcataatgtcaaatgaaatgtttaatagtctttccgt 218  Q
    ||||||||||| | ||||||| ||||  ||||||||| ||| ||| |||||||||||||| ||| | ||||||||||||||||||||||||||||||| |    
T  15023568 acatggatcctagtttagagctaattgattcacatttcaaaaattcatacttgtgttctttttgtacaatgtcaaatgaaatgtttaatagtctttccat 15023667  T
Q  219 tcat 222  Q
    ||||    
T  15023668 tcat 15023671  T

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Target: chr5; HSP #4
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 70 - 215
Target Start/End: Complemental strand, 21788386 - 21788240
Alignment:
Q  70 atgttgtctttagttaattaaatttgtcgagtgaagca-tagacactggaacatggatcctggcttagagccaattcgttcacattttaaagatttatac 168  Q
    ||||||||||| |||||||||| |||| |||||||||| |||||  |||||||   |||||  ||||| || |||| |||||||||| ||| ||| ||||    
T  21788386 atgttgtctttcgttaattaaacttgtagagtgaagcactagactttggaacacatatcctaacttagggctaattggttcacatttcaaatattcatac 21788287  T
Q  169 ttgtgttcttcttgcataatgtcaaatgaaatgtttaatagtctttc 215  Q
    ||||||||||| |||| ||| ||||||||||| ||||||||| ||||    
T  21788286 ttgtgttcttcatgcacaatatcaaatgaaatatttaatagtttttc 21788240  T

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Target: chr7 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 132 - 222
Target Start/End: Original strand, 4633993 - 4634083
Alignment:
Q  132 cttagagccaattcgttcacattttaaagatttatacttgtgttcttcttgcataatgtcaaatgaaatgtttaatagtctttccgttcat 222  Q
    |||| |||||||| |||||||||| ||||||| ||| |||| || |||||||||||||||| |||||||||||||||||||||||||||||    
T  4633993 cttatagccaattggttcacatttcaaagattcatatttgtatttttcttgcataatgtcatatgaaatgtttaatagtctttccgttcat 4634083  T

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Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 141 - 214
Target Start/End: Original strand, 32238918 - 32238991
Alignment:
Q  141 aattcgttcacattttaaagatttatacttgtgttcttcttgcataatgtcaaatgaaatgtttaatagtcttt 214  Q
    |||| ||||||| |||||||||| ||||||| ||| || ||||| ||||||||||||||| |||||||||||||    
T  32238918 aattagttcacactttaaagattcatacttgcgtttttgttgcacaatgtcaaatgaaatatttaatagtcttt 32238991  T

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Target: chr6 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 133 - 222
Target Start/End: Original strand, 27991531 - 27991620
Alignment:
Q  133 ttagagccaattcgttcacattttaaagatttatacttgtgttcttcttgcataatgtcaaatgaaatgtttaatagtctttccgttcat 222  Q
    ||||||| ||||  ||||||||| || |||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||| |||||    
T  27991531 ttagagctaattgattcacatttcaatgattcatacttgtgttctttttgcataatgtaaaatgaaatgtttaatagtctttccattcat 27991620  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 157 - 221
Target Start/End: Complemental strand, 13627895 - 13627831
Alignment:
Q  157 aaagatttatacttgtgttcttcttgcataatgtcaaatgaaatgtttaatagtctttccgttca 221  Q
    ||||||| ||| ||||||| ||||||||||||||||||| ||||||||||||||| || ||||||    
T  13627895 aaagattcatatttgtgtttttcttgcataatgtcaaataaaatgtttaatagtcatttcgttca 13627831  T

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Target: scaffold0010 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 199
Target Start/End: Original strand, 235750 - 235802
Alignment:
Q  147 ttcacattttaaagatttatacttgtgttcttcttgcataatgtcaaatgaaa 199  Q
    ||||||||| ||||||| |||||  ||||||| ||||| ||||||||||||||    
T  235750 ttcacatttcaaagattcatactcatgttctttttgcacaatgtcaaatgaaa 235802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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