View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1369_low_88 (Length: 211)

Name: NF1369_low_88
Description: NF1369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1369_low_88
NF1369_low_88
[»] chr8 (4 HSPs)
chr8 (24-178)||(15151308-15151462)
chr8 (26-166)||(19442403-19442543)
chr8 (26-166)||(19578554-19578694)
chr8 (97-170)||(16822006-16822079)
[»] chr2 (7 HSPs)
chr2 (26-172)||(1644616-1644762)
chr2 (26-178)||(17673362-17673514)
chr2 (26-172)||(17628291-17628437)
chr2 (26-178)||(19569582-19569734)
chr2 (26-178)||(37081275-37081427)
chr2 (30-160)||(3563566-3563696)
chr2 (26-119)||(24578685-24578778)
[»] chr4 (3 HSPs)
chr4 (29-169)||(17405099-17405239)
chr4 (26-178)||(2946660-2946812)
chr4 (59-178)||(6136102-6136221)
[»] chr1 (4 HSPs)
chr1 (26-178)||(2900411-2900560)
chr1 (34-178)||(28538506-28538650)
chr1 (26-178)||(27908301-27908453)
chr1 (97-178)||(23971060-23971141)
[»] chr3 (2 HSPs)
chr3 (44-166)||(9021746-9021868)
chr3 (103-155)||(25226627-25226679)
[»] chr5 (4 HSPs)
chr5 (26-171)||(21714326-21714471)
chr5 (26-171)||(13502392-13502537)
chr5 (75-178)||(15023568-15023671)
chr5 (26-171)||(21788240-21788386)
[»] chr7 (2 HSPs)
chr7 (88-178)||(4633993-4634083)
chr7 (97-170)||(32238918-32238991)
[»] chr6 (2 HSPs)
chr6 (89-178)||(27991531-27991620)
chr6 (113-177)||(13627831-13627895)
[»] scaffold0010 (1 HSPs)
scaffold0010 (103-155)||(235750-235802)


Alignment Details
Target: chr8 (Bit Score: 119; Significance: 5e-61; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 119; E-Value: 5e-61
Query Start/End: Original strand, 24 - 178
Target Start/End: Complemental strand, 15151462 - 15151308
Alignment:
Q  24 atatgttgtctttagttaattaaatttgtcgagtgaagcatagacactggaacatggatcctggcttagagccaattcgttcacattttaaagatttata 123  Q
    |||||||||||||||||||||||| |||||||||||||||||||  |||||| ||||||||| ||||||||||||||||||||||| | || ||||||||    
T  15151462 atatgttgtctttagttaattaaacttgtcgagtgaagcatagattctggaatatggatcctagcttagagccaattcgttcacatatcaatgatttata 15151363  T
Q  124 cttgtgttcttcttgcataatgtcaaatgaaatgtttaatagtctttccgttcat 178  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  15151362 cttgtgttcttcttgcataatgtcaaatgaaatgtttaatagtcttttcgttcat 15151308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 26 - 166
Target Start/End: Complemental strand, 19442543 - 19442403
Alignment:
Q  26 atgttgtctttagttaattaaatttgtcgagtgaagcatagacactggaacatggatcctggcttagagccaattcgttcacattttaaagatttatact 125  Q
    |||||||||||||||||||||| |||||||||||||   |||| ||||||||||||| ||  |||||||| | ||  ||||||||| ||||||| |||||    
T  19442543 atgttgtctttagttaattaaacttgtcgagtgaagtccagactctggaacatggattctaacttagagctatttgtttcacatttcaaagattcatact 19442444  T
Q  126 tgtgttcttcttgcataatgtcaaatgaaatgtttaatagt 166  Q
    ||||||| | | ||| ||| |||||||||||||||||||||    
T  19442443 tgtgttcatatcgcacaatatcaaatgaaatgtttaatagt 19442403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 26 - 166
Target Start/End: Complemental strand, 19578694 - 19578554
Alignment:
Q  26 atgttgtctttagttaattaaatttgtcgagtgaagcatagacactggaacatggatcctggcttagagccaattcgttcacattttaaagatttatact 125  Q
    |||||||||||||||||||||| |||||||||||||   |||| ||||||||||||| ||  |||||||| | ||  ||||||||| ||||||| |||||    
T  19578694 atgttgtctttagttaattaaacttgtcgagtgaagtccagactctggaacatggattctaacttagagctatttgtttcacatttcaaagattcatact 19578595  T
Q  126 tgtgttcttcttgcataatgtcaaatgaaatgtttaatagt 166  Q
    ||||||| | | ||| ||| |||||||||||||||||||||    
T  19578594 tgtgttcatatcgcacaatatcaaatgaaatgtttaatagt 19578554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 97 - 170
Target Start/End: Complemental strand, 16822079 - 16822006
Alignment:
Q  97 aattcgttcacattttaaagatttatacttgtgttcttcttgcataatgtcaaatgaaatgtttaatagtcttt 170  Q
    |||| ||||||| || || |||| ||||||||||| |||||| | |||||||||||||||||||||||||||||    
T  16822079 aattggttcacacttcaatgattcatacttgtgtttttcttgtacaatgtcaaatgaaatgtttaatagtcttt 16822006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 87; Significance: 7e-42; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 26 - 172
Target Start/End: Complemental strand, 1644762 - 1644616
Alignment:
Q  26 atgttgtctttagttaattaaatttgtcgagtgaagcatagacactggaacatggatcctggcttagagccaattcgttcacattttaaagatttatact 125  Q
    |||||||||||||||||||||| |||||||| ||||  ||||| ||| |||||||||||| ||||||||| |||| |||||||||| ||||||| ||||     
T  1644762 atgttgtctttagttaattaaacttgtcgagcgaagtctagactctgaaacatggatcctagcttagagctaatttgttcacatttcaaagattcatacc 1644663  T
Q  126 tgtgttcttcttgcataatgtcaaatgaaatgtttaatagtctttcc 172  Q
    | || |||||||||| |||||||||||||||||||||||||||||||    
T  1644662 tatgctcttcttgcacaatgtcaaatgaaatgtttaatagtctttcc 1644616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 26 - 178
Target Start/End: Original strand, 17673362 - 17673514
Alignment:
Q  26 atgttgtctttagttaattaaatttgtcgagtgaagcatagacactggaacatggatcctggcttagagccaattcgttcacattttaaagatttatact 125  Q
    |||||| ||||||||||||||| ||||| | | |||||||||| || ||||||||||||| ||||||||| |||| |||||||||| ||||||| || ||    
T  17673362 atgttgcctttagttaattaaacttgtccaataaagcatagactcttgaacatggatcctagcttagagctaattggttcacatttcaaagattcatgct 17673461  T
Q  126 tgtgttcttcttgcataatgtcaaatgaaatgtttaatagtctttccgttcat 178  Q
    ||||||||||||||| || |||||||||||||||| ||||||||||| |||||    
T  17673462 tgtgttcttcttgcacaacgtcaaatgaaatgtttcatagtctttccattcat 17673514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 26 - 172
Target Start/End: Original strand, 17628291 - 17628437
Alignment:
Q  26 atgttgtctttagttaattaaatttgtcgagtgaagcatagacactggaacatggatcctggcttagagccaattcgttcacattttaaagatttatact 125  Q
    |||||| ||||||||||||||| ||||| | | |||||||||| || ||||||||||||| ||||||||| ||||  ||||||||| ||||||| || ||    
T  17628291 atgttgcctttagttaattaaacttgtccaataaagcatagactcttgaacatggatcctagcttagagctaattgattcacatttcaaagattcatgct 17628390  T
Q  126 tgtgttcttcttgcataatgtcaaatgaaatgtttaatagtctttcc 172  Q
    ||||||||||||||| || |||||||||||||||| |||||||||||    
T  17628391 tgtgttcttcttgcacaacgtcaaatgaaatgtttcatagtctttcc 17628437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 26 - 178
Target Start/End: Complemental strand, 19569734 - 19569582
Alignment:
Q  26 atgttgtctttagttaattaaatttgtcgagtgaagcatagacactggaacatggatcctggcttagagccaattcgttcacattttaaagatttatact 125  Q
    |||||||||||||||||||||| | |||||||||| | |||||  | ||||||||||||| |||||||||  ||  ||||||| || ||| ||| ||| |    
T  19569734 atgttgtctttagttaattaaactagtcgagtgaaacctagactttcgaacatggatcctagcttagagctcatcggttcacaattcaaaaattcatatt 19569635  T
Q  126 tgtgttcttcttgcataatgtcaaatgaaatgtttaatagtctttccgttcat 178  Q
    |||||| |||||||| ||||||||||||||||||||||||||||||| |||||    
T  19569634 tgtgtttttcttgcacaatgtcaaatgaaatgtttaatagtctttccattcat 19569582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 26 - 178
Target Start/End: Original strand, 37081275 - 37081427
Alignment:
Q  26 atgttgtctttagttaattaaatttgtcgagtgaagcatagacactggaacatggatcctggcttagagccaattcgttcacattttaaagatttatact 125  Q
    |||||||||||||||| ||||| |||| ||||||||| ||||| | ||| ||||||  ||  |||||||| |||  |||||||||| ||||||| |||||    
T  37081275 atgttgtctttagttagttaaacttgttgagtgaagcctagactccggatcatggactctaacttagagctaatcggttcacatttcaaagattcatact 37081374  T
Q  126 tgtgttcttcttgcataatgtcaaatgaaatgtttaatagtctttccgttcat 178  Q
    ||||||||||||||| ||| | |||| |||||||| |||||||||||||||||    
T  37081375 tgtgttcttcttgcacaatataaaataaaatgtttgatagtctttccgttcat 37081427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 30 - 160
Target Start/End: Complemental strand, 3563696 - 3563566
Alignment:
Q  30 tgtctttagttaattaaatttgtcgagtgaagcatagacactggaacatggatcctggcttagagccaattcgttcacattttaaagatttatacttgtg 129  Q
    |||||||||||||||||| |||||||||||||  ||||  || ||||||||||||| ||||||||| |||| ||| | |||| ||||||| |||||||||    
T  3563696 tgtctttagttaattaaacttgtcgagtgaagtctagagtcttgaacatggatcctagcttagagctaattggtttatatttcaaagattcatacttgtg 3563597  T
Q  130 ttcttcttgcataatgtcaaatgaaatgttt 160  Q
     |||||||| | |||||| ||||||||||||    
T  3563596 ctcttcttgtaaaatgtcgaatgaaatgttt 3563566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 26 - 119
Target Start/End: Complemental strand, 24578778 - 24578685
Alignment:
Q  26 atgttgtctttagttaattaaatttgtcgagtgaagcatagacactggaacatggatcctggcttagagccaattcgttcacattttaaagatt 119  Q
    ||||||||||||||||||||||||||||||||||| | ||||| ||||||||||||| || ||||||||| ||||  ||||||||| |||||||    
T  24578778 atgttgtctttagttaattaaatttgtcgagtgaaacctagactctggaacatggattctagcttagagctaattatttcacatttcaaagatt 24578685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 85; Significance: 1e-40; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 29 - 169
Target Start/End: Original strand, 17405099 - 17405239
Alignment:
Q  29 ttgtctttagttaattaaatttgtcgagtgaagcatagacactggaacatggatcctggcttagagccaattcgttcacattttaaagatttatacttgt 128  Q
    ||||||||||||||||||| |||||||||||||| ||||   |||||||||||||||  |||||||| |||| ||||||| || ||| ||| ||||||||    
T  17405099 ttgtctttagttaattaaacttgtcgagtgaagcctagattttggaacatggatcctaccttagagctaattggttcacacttaaaaaattcatacttgt 17405198  T
Q  129 gttcttcttgcataatgtcaaatgaaatgtttaatagtctt 169  Q
    |||||||||||| ||||||||||||||||||||||||||||    
T  17405199 gttcttcttgcacaatgtcaaatgaaatgtttaatagtctt 17405239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 26 - 178
Target Start/End: Complemental strand, 2946812 - 2946660
Alignment:
Q  26 atgttgtctttagttaattaaatttgtcgagtgaagcatagacactggaacatggatcctggcttagagccaattcgttcacattttaaagatttatact 125  Q
    ||||||| |||||||||||||| |||||||||||||| ||||| || |||||| |||| | | ||||||| |||| | || ||||| ||||||| ||||     
T  2946812 atgttgtttttagttaattaaaattgtcgagtgaagcctagactctagaacatagatcatagtttagagctaattggctcgcatttcaaagattcataca 2946713  T
Q  126 tgtgttcttcttgcataatgtcaaatgaaatgtttaatagtctttccgttcat 178  Q
    ||||||||||||||| |||||||||||||||||| |||||||||||| |||||    
T  2946712 tgtgttcttcttgcacaatgtcaaatgaaatgttaaatagtctttccattcat 2946660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 59 - 178
Target Start/End: Complemental strand, 6136221 - 6136102
Alignment:
Q  59 aagcatagacactggaacatggatcctggcttagagccaattcgttcacattttaaagatttatacttgtgttcttcttgcataatgtcaaatgaaatgt 158  Q
    |||| ||||| |||| ||||||||||| ||||||||| ||||  ||||||||| ||||||| |||| ||||||||||||||| ||| |||||||||||||    
T  6136221 aagcctagactctggcacatggatcctagcttagagctaattgattcacatttcaaagattcatacatgtgttcttcttgcacaatatcaaatgaaatgt 6136122  T
Q  159 ttaatagtctttccgttcat 178  Q
    |||||||||||||| |||||    
T  6136121 ttaatagtctttccattcat 6136102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 83; Significance: 2e-39; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 26 - 178
Target Start/End: Complemental strand, 2900560 - 2900411
Alignment:
Q  26 atgttgtctttagttaattaaatttgtcgagtgaagcatagacactggaacatggatcctggcttagagccaattcgttcacattttaaagatttatact 125  Q
    |||||||||||||||||||||| |||||||||||||  |||||  || |||||||||||| ||||||||| |||| |||  ||||| |||||||||||||    
T  2900560 atgttgtctttagttaattaaacttgtcgagtgaagtctagactttgtaacatggatcctagcttagagctaattggttgtcatttcaaagatttatact 2900461  T
Q  126 tgtgttcttcttgcataatgtcaaatgaaatgtttaatagtctttccgttcat 178  Q
    |||||   ||||||| ||||||||||||||||||||||||||||||| |||||    
T  2900460 tgtgt---tcttgcacaatgtcaaatgaaatgtttaatagtctttccattcat 2900411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 34 - 178
Target Start/End: Complemental strand, 28538650 - 28538506
Alignment:
Q  34 tttagttaattaaatttgtcgagtgaagcatagacactggaacatggatcctggcttagagccaattcgttcacattttaaagatttatacttgtgttct 133  Q
    |||||||||||||| ||||| |||||||| ||||| |  ||||||||||||| ||||||||  |||| |||||||||| ||||||| |||||||||||||    
T  28538650 tttagttaattaaacttgtcaagtgaagcctagactcctgaacatggatcctagcttagagttaattggttcacatttcaaagattcatacttgtgttct 28538551  T
Q  134 tcttgcataatgtcaaatgaaatgtttaatagtctttccgttcat 178  Q
    ||| ||| ||||||||||||||||||| ||| ||||||| |||||    
T  28538550 tctagcacaatgtcaaatgaaatgtttcataatctttccattcat 28538506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 26 - 178
Target Start/End: Complemental strand, 27908453 - 27908301
Alignment:
Q  26 atgttgtctttagttaattaaatttgtcgagtgaagcatagacactggaacatggatcctggcttagagccaattcgttcacattttaaagatttatact 125  Q
    |||||||||||||||||||||| |||| ||||||||  ||||   ||||||||||||||| ||||||||| |||| |||||||||| ||| ||| |||||    
T  27908453 atgttgtctttagttaattaaacttgtagagtgaagtctagattttggaacatggatcctagcttagagctaattggttcacatttcaaatattcatact 27908354  T
Q  126 tgtgttcttcttgcataatgtcaaatgaaatgtttaatagtctttccgttcat 178  Q
    ||||||||| ||||| ||||| ||||||||| |||| || ||||||| |||||    
T  27908353 tgtgttcttgttgcacaatgtgaaatgaaatatttattaatctttccattcat 27908301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 97 - 178
Target Start/End: Original strand, 23971060 - 23971141
Alignment:
Q  97 aattcgttcacattttaaagatttatacttgtgttcttcttgcataatgtcaaatgaaatgtttaatagtctttccgttcat 178  Q
    |||| ||||||| || ||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||| ||||||    
T  23971060 aattggttcacacttcaaagattcatacttgtgtttttcttgcacaatgtcaaatgaaatgtttaatagtctttcagttcat 23971141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 44 - 166
Target Start/End: Original strand, 9021746 - 9021868
Alignment:
Q  44 taaatttgtcgagtgaagcatagacactggaacatggatcctggcttagagccaattcgttcacattttaaagatttatacttgtgttcttcttgcataa 143  Q
    |||| |||||||||||||| ||||| |||||||||||||  | ||||||||| |||| ||| |||||| ||||||| |||||||||||||||||||| ||    
T  9021746 taaacttgtcgagtgaagcctagactctggaacatggattatagcttagagctaattggtttacatttcaaagattcatacttgtgttcttcttgcacaa 9021845  T
Q  144 tgtcaaatgaaatgtttaatagt 166  Q
    |||||||||||||||||||||||    
T  9021846 tgtcaaatgaaatgtttaatagt 9021868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 103 - 155
Target Start/End: Complemental strand, 25226679 - 25226627
Alignment:
Q  103 ttcacattttaaagatttatacttgtgttcttcttgcataatgtcaaatgaaa 155  Q
    ||||||||| ||||||| ||||| |||||||| ||||| ||||||||||||||    
T  25226679 ttcacatttcaaagattcatactcgtgttctttttgcacaatgtcaaatgaaa 25226627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 6e-27; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 26 - 171
Target Start/End: Complemental strand, 21714471 - 21714326
Alignment:
Q  26 atgttgtctttagttaattaaatttgtcgagtgaagcatagacactggaacatggatcctggcttagagccaattcgttcacattttaaagatttatact 125  Q
    ||||||||||| |||||||||| |||| ||||||||| |||||  |||||||   |||||  ||||| || |||| |||||||||| ||| ||| |||||    
T  21714471 atgttgtctttcgttaattaaacttgtagagtgaagcctagactttggaacacatatcctaacttagggctaattggttcacatttcaaatattcatact 21714372  T
Q  126 tgtgttcttcttgcataatgtcaaatgaaatgtttaatagtctttc 171  Q
    |||||||||| |||| ||| ||||||||||| ||||||||||||||    
T  21714371 tgtgttcttcatgcacaatatcaaatgaaatatttaatagtctttc 21714326  T

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Target: chr5; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 26 - 171
Target Start/End: Original strand, 13502392 - 13502537
Alignment:
Q  26 atgttgtctttagttaattaaatttgtcgagtgaagcatagacactggaacatggatcctggcttagagccaattcgttcacattttaaagatttatact 125  Q
    |||||||||||||||||||||| |||| ||||||||| |||||  |||||||   ||||| |||||| || ||||  ||||||||| ||| ||| |||||    
T  13502392 atgttgtctttagttaattaaacttgtagagtgaagcctagactttggaacacatatcctagcttagggctaattgattcacatttcaaatattcatact 13502491  T
Q  126 tgtgttcttcttgcataatgtcaaatgaaatgtttaatagtctttc 171  Q
    ||||||||||||||| ||| || ||| |||| |||||||| |||||    
T  13502492 tgtgttcttcttgcacaatatcgaataaaatatttaatagcctttc 13502537  T

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Target: chr5; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 75 - 178
Target Start/End: Original strand, 15023568 - 15023671
Alignment:
Q  75 acatggatcctggcttagagccaattcgttcacattttaaagatttatacttgtgttcttcttgcataatgtcaaatgaaatgtttaatagtctttccgt 174  Q
    ||||||||||| | ||||||| ||||  ||||||||| ||| ||| |||||||||||||| ||| | ||||||||||||||||||||||||||||||| |    
T  15023568 acatggatcctagtttagagctaattgattcacatttcaaaaattcatacttgtgttctttttgtacaatgtcaaatgaaatgtttaatagtctttccat 15023667  T
Q  175 tcat 178  Q
    ||||    
T  15023668 tcat 15023671  T

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Target: chr5; HSP #4
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 26 - 171
Target Start/End: Complemental strand, 21788386 - 21788240
Alignment:
Q  26 atgttgtctttagttaattaaatttgtcgagtgaagca-tagacactggaacatggatcctggcttagagccaattcgttcacattttaaagatttatac 124  Q
    ||||||||||| |||||||||| |||| |||||||||| |||||  |||||||   |||||  ||||| || |||| |||||||||| ||| ||| ||||    
T  21788386 atgttgtctttcgttaattaaacttgtagagtgaagcactagactttggaacacatatcctaacttagggctaattggttcacatttcaaatattcatac 21788287  T
Q  125 ttgtgttcttcttgcataatgtcaaatgaaatgtttaatagtctttc 171  Q
    ||||||||||| |||| ||| ||||||||||| ||||||||| ||||    
T  21788286 ttgtgttcttcatgcacaatatcaaatgaaatatttaatagtttttc 21788240  T

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Target: chr7 (Bit Score: 59; Significance: 3e-25; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 88 - 178
Target Start/End: Original strand, 4633993 - 4634083
Alignment:
Q  88 cttagagccaattcgttcacattttaaagatttatacttgtgttcttcttgcataatgtcaaatgaaatgtttaatagtctttccgttcat 178  Q
    |||| |||||||| |||||||||| ||||||| ||| |||| || |||||||||||||||| |||||||||||||||||||||||||||||    
T  4633993 cttatagccaattggttcacatttcaaagattcatatttgtatttttcttgcataatgtcatatgaaatgtttaatagtctttccgttcat 4634083  T

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Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 97 - 170
Target Start/End: Original strand, 32238918 - 32238991
Alignment:
Q  97 aattcgttcacattttaaagatttatacttgtgttcttcttgcataatgtcaaatgaaatgtttaatagtcttt 170  Q
    |||| ||||||| |||||||||| ||||||| ||| || ||||| ||||||||||||||| |||||||||||||    
T  32238918 aattagttcacactttaaagattcatacttgcgtttttgttgcacaatgtcaaatgaaatatttaatagtcttt 32238991  T

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Target: chr6 (Bit Score: 54; Significance: 3e-22; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 89 - 178
Target Start/End: Original strand, 27991531 - 27991620
Alignment:
Q  89 ttagagccaattcgttcacattttaaagatttatacttgtgttcttcttgcataatgtcaaatgaaatgtttaatagtctttccgttcat 178  Q
    ||||||| ||||  ||||||||| || |||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||| |||||    
T  27991531 ttagagctaattgattcacatttcaatgattcatacttgtgttctttttgcataatgtaaaatgaaatgtttaatagtctttccattcat 27991620  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 113 - 177
Target Start/End: Complemental strand, 13627895 - 13627831
Alignment:
Q  113 aaagatttatacttgtgttcttcttgcataatgtcaaatgaaatgtttaatagtctttccgttca 177  Q
    ||||||| ||| ||||||| ||||||||||||||||||| ||||||||||||||| || ||||||    
T  13627895 aaagattcatatttgtgtttttcttgcataatgtcaaataaaatgtttaatagtcatttcgttca 13627831  T

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Target: scaffold0010 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 155
Target Start/End: Original strand, 235750 - 235802
Alignment:
Q  103 ttcacattttaaagatttatacttgtgttcttcttgcataatgtcaaatgaaa 155  Q
    ||||||||| ||||||| |||||  ||||||| ||||| ||||||||||||||    
T  235750 ttcacatttcaaagattcatactcatgttctttttgcacaatgtcaaatgaaa 235802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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