View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1369_low_9 (Length: 583)
Name: NF1369_low_9
Description: NF1369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1369_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 432; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 15 - 454
Target Start/End: Complemental strand, 50428206 - 50427767
Alignment:
| Q |
15 |
aacctgtgccagaaacaatcccaaattctctttcctttattgtatataaactatatccttgcatctccaatgtgcttcctatgtacttaccagaagtgaa |
114 |
Q |
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| T |
50428206 |
aacctgtgccagaaacaatcccaaattctctttcctttgttgtatataaactatatccttgcatctccaatgtgcttcctatgtacttaccagaagtgaa |
50428107 |
T |
|
| Q |
115 |
tatcactgagaaaaccatgtacactgctttgctatcaagctgcgaatttacgtacacgccctgagcactgccaaggagtgttgaatccattgcgggtccc |
214 |
Q |
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| T |
50428106 |
tatcactgagaaaaccatgtacactgctttgctatcaagctgcgaatttacgtacacgccctgagcactgccaaggagtgttgaatccattgcgggtccc |
50428007 |
T |
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| Q |
215 |
tctgttactggatcatcaattattgccacggtgccgaagtgttggatattaaagttgggtccatttataccggcaacggtgactgccgacgtgttttcac |
314 |
Q |
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| T |
50428006 |
tctgttactggatcatcgattattgccacggtgccgaagtgttggatattaaagttgggtccatttataccggcaacggtgactgccgacgtgttttcac |
50427907 |
T |
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| Q |
315 |
cggtgaagtggtcgtgaatgtagaagagcatgttggtttgatttggttcgagtttttggaaggtgtaggccacatagaggatgatcaatgtgaagatgaa |
414 |
Q |
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| T |
50427906 |
cggtgaagtggtcgtgaatgtagaagagcatgttggtttgatttggttcgagtttttggaaggtgtaggccacatagaggatgatcaatgtgaagatgaa |
50427807 |
T |
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| Q |
415 |
gaaaaatgagctggaagtgaggtttagtggattgaccatg |
454 |
Q |
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| T |
50427806 |
gaaaaatgagctggaagtgaggtttagtggattgaccatg |
50427767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 15 - 435
Target Start/End: Complemental strand, 50423033 - 50422613
Alignment:
| Q |
15 |
aacctgtgccagaaacaatcccaaattctctttcctttattgtatataaactatatccttgcatctccaatgtgcttcctatgtacttaccagaagtgaa |
114 |
Q |
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|||||||||| |||||||| |||||||||| |||||| |||| ||| | | ||||||| |||||||| ||||||||| | |||| ||||| ||||| |
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| T |
50423033 |
aacctgtgcctgaaacaattccaaattctcgttccttcgttgtgaatatatcagatccttgaatctccaaggtgcttcctctatactcaccagctgtgaa |
50422934 |
T |
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| Q |
115 |
tatcactgagaaaaccatgtacactgctttgctatcaagctgcgaatttacgtacacgccctgagcactgccaaggagtgttgaatccattgcgggtccc |
214 |
Q |
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| T |
50422933 |
tatcaccgagaaaaccatgtacaaagctttaccatcaagctgcgaatttatgtacgtgccttgagctctaccgatgagttttgaatccattgtaggtccc |
50422834 |
T |
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| Q |
215 |
tctgttactggatcatcaattattgccacggtgccgaagtgttggatattaaagttgggtccatttataccggcaacggtgactgccgacgtgttttcac |
314 |
Q |
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| T |
50422833 |
tcggttactggatcgtcaactatagctacggtgccaaagtgtaggatgctggaggtaactccagttttaccagcaactgtagctgcggtggagtcttcac |
50422734 |
T |
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| Q |
315 |
cggtgaagtggtcgtgaatgtagaagagcatgttggtttgatttggttcgagtttttggaaggtgtaggccacatagaggatgatcaatgtgaagatgaa |
414 |
Q |
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| T |
50422733 |
cggtgaagtggtcatggacgtagaagacgaggttggtttggtttggttcgagtttagggaaggtataggctacatagatgatggtcaatgtgaagatgaa |
50422634 |
T |
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| Q |
415 |
gaaaaatgagctggaagtgag |
435 |
Q |
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||| || || |||||||||| |
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| T |
50422633 |
gaagaagaagttggaagtgag |
50422613 |
T |
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