View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1369_low_90 (Length: 206)

Name: NF1369_low_90
Description: NF1369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1369_low_90
NF1369_low_90
[»] chr8 (4 HSPs)
chr8 (32-186)||(15151308-15151462)
chr8 (44-184)||(19442403-19442543)
chr8 (44-184)||(19578554-19578694)
chr8 (40-113)||(16822006-16822079)
[»] chr2 (7 HSPs)
chr2 (38-184)||(1644616-1644762)
chr2 (32-184)||(17673362-17673514)
chr2 (38-184)||(17628291-17628437)
chr2 (32-184)||(19569582-19569734)
chr2 (32-184)||(37081275-37081427)
chr2 (50-180)||(3563566-3563696)
chr2 (91-184)||(24578685-24578778)
[»] chr4 (3 HSPs)
chr4 (41-181)||(17405099-17405239)
chr4 (32-184)||(2946660-2946812)
chr4 (32-151)||(6136102-6136221)
[»] chr1 (4 HSPs)
chr1 (32-184)||(2900411-2900560)
chr1 (32-176)||(28538506-28538650)
chr1 (32-184)||(27908301-27908453)
chr1 (32-113)||(23971060-23971141)
[»] chr3 (2 HSPs)
chr3 (44-166)||(9021746-9021868)
chr3 (55-107)||(25226627-25226679)
[»] chr5 (4 HSPs)
chr5 (39-184)||(21714326-21714471)
chr5 (39-184)||(13502392-13502537)
chr5 (32-135)||(15023568-15023671)
chr5 (39-184)||(21788240-21788386)
[»] chr7 (2 HSPs)
chr7 (32-122)||(4633993-4634083)
chr7 (40-113)||(32238918-32238991)
[»] chr6 (2 HSPs)
chr6 (32-121)||(27991531-27991620)
chr6 (33-97)||(13627831-13627895)
[»] scaffold0010 (1 HSPs)
scaffold0010 (55-107)||(235750-235802)


Alignment Details
Target: chr8 (Bit Score: 119; Significance: 5e-61; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 119; E-Value: 5e-61
Query Start/End: Original strand, 32 - 186
Target Start/End: Original strand, 15151308 - 15151462
Alignment:
Q  32 atgaacggaaagactattaaacatttcatttgacattatgcaagaagaacacaagtataaatctttaaaatgtgaacgaattggctctaagccaggatcc 131  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | ||||||||||||||||||||||| |||||||    
T  15151308 atgaacgaaaagactattaaacatttcatttgacattatgcaagaagaacacaagtataaatcattgatatgtgaacgaattggctctaagctaggatcc 15151407  T
Q  132 atgttccagtgtctatgcttcactcgacaaatttaattaactaaagacaacatat 186  Q
    || ||||||  ||||||||||||||||||| ||||||||||||||||||||||||    
T  15151408 atattccagaatctatgcttcactcgacaagtttaattaactaaagacaacatat 15151462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 44 - 184
Target Start/End: Original strand, 19442403 - 19442543
Alignment:
Q  44 actattaaacatttcatttgacattatgcaagaagaacacaagtataaatctttaaaatgtgaacgaattggctctaagccaggatccatgttccagtgt 143  Q
    ||||||||||||||||||||| ||| ||| | | |||||||||||| ||||||| |||||||||  || | ||||||||  || ||||||||||||| ||    
T  19442403 actattaaacatttcatttgatattgtgcgatatgaacacaagtatgaatctttgaaatgtgaaacaaatagctctaagttagaatccatgttccagagt 19442502  T
Q  144 ctatgcttcactcgacaaatttaattaactaaagacaacat 184  Q
    ||   ||||||||||||| ||||||||||||||||||||||    
T  19442503 ctggacttcactcgacaagtttaattaactaaagacaacat 19442543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 44 - 184
Target Start/End: Original strand, 19578554 - 19578694
Alignment:
Q  44 actattaaacatttcatttgacattatgcaagaagaacacaagtataaatctttaaaatgtgaacgaattggctctaagccaggatccatgttccagtgt 143  Q
    ||||||||||||||||||||| ||| ||| | | |||||||||||| ||||||| |||||||||  || | ||||||||  || ||||||||||||| ||    
T  19578554 actattaaacatttcatttgatattgtgcgatatgaacacaagtatgaatctttgaaatgtgaaacaaatagctctaagttagaatccatgttccagagt 19578653  T
Q  144 ctatgcttcactcgacaaatttaattaactaaagacaacat 184  Q
    ||   ||||||||||||| ||||||||||||||||||||||    
T  19578654 ctggacttcactcgacaagtttaattaactaaagacaacat 19578694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 40 - 113
Target Start/End: Original strand, 16822006 - 16822079
Alignment:
Q  40 aaagactattaaacatttcatttgacattatgcaagaagaacacaagtataaatctttaaaatgtgaacgaatt 113  Q
    ||||||||||||||||||||||||||||| | |||||| ||||||||||| |||| || || ||||||| ||||    
T  16822006 aaagactattaaacatttcatttgacattgtacaagaaaaacacaagtatgaatcattgaagtgtgaaccaatt 16822079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 87; Significance: 7e-42; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 38 - 184
Target Start/End: Original strand, 1644616 - 1644762
Alignment:
Q  38 ggaaagactattaaacatttcatttgacattatgcaagaagaacacaagtataaatctttaaaatgtgaacgaattggctctaagccaggatccatgttc 137  Q
    ||||||||||||||||||||||||||||||| |||||||||| || | |||| ||||||| |||||||||| |||| ||||||||| ||||||||||||     
T  1644616 ggaaagactattaaacatttcatttgacattgtgcaagaagagcataggtatgaatctttgaaatgtgaacaaattagctctaagctaggatccatgttt 1644715  T
Q  138 cagtgtctatgcttcactcgacaaatttaattaactaaagacaacat 184  Q
    ||| |||||  |||| |||||||| ||||||||||||||||||||||    
T  1644716 cagagtctagacttcgctcgacaagtttaattaactaaagacaacat 1644762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 32 - 184
Target Start/End: Complemental strand, 17673514 - 17673362
Alignment:
Q  32 atgaacggaaagactattaaacatttcatttgacattatgcaagaagaacacaagtataaatctttaaaatgtgaacgaattggctctaagccaggatcc 131  Q
    ||||| ||||||||||| |||||||||||||||| || ||||||||||||||||| || ||||||| |||||||||| |||| ||||||||| |||||||    
T  17673514 atgaatggaaagactatgaaacatttcatttgacgttgtgcaagaagaacacaagcatgaatctttgaaatgtgaaccaattagctctaagctaggatcc 17673415  T
Q  132 atgttccagtgtctatgcttcactcgacaaatttaattaactaaagacaacat 184  Q
    |||||| || |||||||||| | | ||||| ||||||||||||||| ||||||    
T  17673414 atgttcaagagtctatgctttattggacaagtttaattaactaaaggcaacat 17673362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 38 - 184
Target Start/End: Complemental strand, 17628437 - 17628291
Alignment:
Q  38 ggaaagactattaaacatttcatttgacattatgcaagaagaacacaagtataaatctttaaaatgtgaacgaattggctctaagccaggatccatgttc 137  Q
    ||||||||||| |||||||||||||||| || ||||||||||||||||| || ||||||| |||||||||  |||| ||||||||| |||||||||||||    
T  17628437 ggaaagactatgaaacatttcatttgacgttgtgcaagaagaacacaagcatgaatctttgaaatgtgaatcaattagctctaagctaggatccatgttc 17628338  T
Q  138 cagtgtctatgcttcactcgacaaatttaattaactaaagacaacat 184  Q
     || |||||||||| | | ||||| ||||||||||||||| ||||||    
T  17628337 aagagtctatgctttattggacaagtttaattaactaaaggcaacat 17628291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 32 - 184
Target Start/End: Original strand, 19569582 - 19569734
Alignment:
Q  32 atgaacggaaagactattaaacatttcatttgacattatgcaagaagaacacaagtataaatctttaaaatgtgaacgaattggctctaagccaggatcc 131  Q
    ||||| ||||||||||||||||||||||||||||||| |||||||| ||||||| ||| ||| ||| || |||||||  ||  ||||||||| |||||||    
T  19569582 atgaatggaaagactattaaacatttcatttgacattgtgcaagaaaaacacaaatatgaatttttgaattgtgaaccgatgagctctaagctaggatcc 19569681  T
Q  132 atgttccagtgtctatgcttcactcgacaaatttaattaactaaagacaacat 184  Q
    |||||| |  ||||| | |||||||||| | ||||||||||||||||||||||    
T  19569682 atgttcgaaagtctaggtttcactcgactagtttaattaactaaagacaacat 19569734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 32 - 184
Target Start/End: Complemental strand, 37081427 - 37081275
Alignment:
Q  32 atgaacggaaagactattaaacatttcatttgacattatgcaagaagaacacaagtataaatctttaaaatgtgaacgaattggctctaagccaggatcc 131  Q
    ||||||||||||||||| |||||||| |||| | ||| |||||||||||||||||||| ||||||| ||||||||||  ||| ||||||||  ||  |||    
T  37081427 atgaacggaaagactatcaaacattttattttatattgtgcaagaagaacacaagtatgaatctttgaaatgtgaaccgattagctctaagttagagtcc 37081328  T
Q  132 atgttccagtgtctatgcttcactcgacaaatttaattaactaaagacaacat 184  Q
    ||| ||| | ||||| ||||||||| |||| ||||| ||||||||||||||||    
T  37081327 atgatccggagtctaggcttcactcaacaagtttaactaactaaagacaacat 37081275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 50 - 180
Target Start/End: Original strand, 3563566 - 3563696
Alignment:
Q  50 aaacatttcatttgacattatgcaagaagaacacaagtataaatctttaaaatgtgaacgaattggctctaagccaggatccatgttccagtgtctatgc 149  Q
    |||||||||||| |||||| | |||||||| ||||||||| ||||||| |||| | ||| |||| ||||||||| ||||||||||||| ||  ||||  |    
T  3563566 aaacatttcattcgacattttacaagaagagcacaagtatgaatctttgaaatataaaccaattagctctaagctaggatccatgttcaagactctagac 3563665  T
Q  150 ttcactcgacaaatttaattaactaaagaca 180  Q
    |||||||||||| ||||||||||||||||||    
T  3563666 ttcactcgacaagtttaattaactaaagaca 3563696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 91 - 184
Target Start/End: Original strand, 24578685 - 24578778
Alignment:
Q  91 aatctttaaaatgtgaacgaattggctctaagccaggatccatgttccagtgtctatgcttcactcgacaaatttaattaactaaagacaacat 184  Q
    ||||||| |||||||||  |||| ||||||||| || ||||||||||||| ||||| | |||||||||||||||||||||||||||||||||||    
T  24578685 aatctttgaaatgtgaaataattagctctaagctagaatccatgttccagagtctaggtttcactcgacaaatttaattaactaaagacaacat 24578778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 85; Significance: 1e-40; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 41 - 181
Target Start/End: Complemental strand, 17405239 - 17405099
Alignment:
Q  41 aagactattaaacatttcatttgacattatgcaagaagaacacaagtataaatctttaaaatgtgaacgaattggctctaagccaggatccatgttccag 140  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||| ||| ||| || ||||||| |||| ||||||||  |||||||||||||||     
T  17405239 aagactattaaacatttcatttgacattgtgcaagaagaacacaagtatgaattttttaagtgtgaaccaattagctctaaggtaggatccatgttccaa 17405140  T
Q  141 tgtctatgcttcactcgacaaatttaattaactaaagacaa 181  Q
      |||| |||||||||||||| |||||||||||||||||||    
T  17405139 aatctaggcttcactcgacaagtttaattaactaaagacaa 17405099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 32 - 184
Target Start/End: Original strand, 2946660 - 2946812
Alignment:
Q  32 atgaacggaaagactattaaacatttcatttgacattatgcaagaagaacacaagtataaatctttaaaatgtgaacgaattggctctaagccaggatcc 131  Q
    ||||| |||||||||||| |||||||||||||||||| ||||||||||||||| |||| ||||||| ||||| || | |||| ||||||| | | ||||     
T  2946660 atgaatggaaagactatttaacatttcatttgacattgtgcaagaagaacacatgtatgaatctttgaaatgcgagccaattagctctaaactatgatct 2946759  T
Q  132 atgttccagtgtctatgcttcactcgacaaatttaattaactaaagacaacat 184  Q
    |||||| || ||||| |||||||||||||| |||||||||||||| |||||||    
T  2946760 atgttctagagtctaggcttcactcgacaattttaattaactaaaaacaacat 2946812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 32 - 151
Target Start/End: Original strand, 6136102 - 6136221
Alignment:
Q  32 atgaacggaaagactattaaacatttcatttgacattatgcaagaagaacacaagtataaatctttaaaatgtgaacgaattggctctaagccaggatcc 131  Q
    ||||| ||||||||||||||||||||||||||| ||| ||||||||||||||| |||| ||||||| |||||||||  |||| ||||||||| |||||||    
T  6136102 atgaatggaaagactattaaacatttcatttgatattgtgcaagaagaacacatgtatgaatctttgaaatgtgaatcaattagctctaagctaggatcc 6136201  T
Q  132 atgttccagtgtctatgctt 151  Q
    |||| |||| ||||| ||||    
T  6136202 atgtgccagagtctaggctt 6136221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 83; Significance: 2e-39; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 32 - 184
Target Start/End: Original strand, 2900411 - 2900560
Alignment:
Q  32 atgaacggaaagactattaaacatttcatttgacattatgcaagaagaacacaagtataaatctttaaaatgtgaacgaattggctctaagccaggatcc 131  Q
    ||||| ||||||||||||||||||||||||||||||| |||||||   |||||||||||||||||| |||||  ||| |||| ||||||||| |||||||    
T  2900411 atgaatggaaagactattaaacatttcatttgacattgtgcaaga---acacaagtataaatctttgaaatgacaaccaattagctctaagctaggatcc 2900507  T
Q  132 atgttccagtgtctatgcttcactcgacaaatttaattaactaaagacaacat 184  Q
    ||||| ||  |||||  ||||||||||||| ||||||||||||||||||||||    
T  2900508 atgttacaaagtctagacttcactcgacaagtttaattaactaaagacaacat 2900560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 32 - 176
Target Start/End: Original strand, 28538506 - 28538650
Alignment:
Q  32 atgaacggaaagactattaaacatttcatttgacattatgcaagaagaacacaagtataaatctttaaaatgtgaacgaattggctctaagccaggatcc 131  Q
    ||||| ||||||| ||| ||||||||||||||||||| ||| |||||||||||||||| ||||||| |||||||||| ||||  |||||||| |||||||    
T  28538506 atgaatggaaagattatgaaacatttcatttgacattgtgctagaagaacacaagtatgaatctttgaaatgtgaaccaattaactctaagctaggatcc 28538605  T
Q  132 atgttccagtgtctatgcttcactcgacaaatttaattaactaaa 176  Q
    ||||||  | ||||| |||||||| ||||| ||||||||||||||    
T  28538606 atgttcaggagtctaggcttcacttgacaagtttaattaactaaa 28538650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 32 - 184
Target Start/End: Original strand, 27908301 - 27908453
Alignment:
Q  32 atgaacggaaagactattaaacatttcatttgacattatgcaagaagaacacaagtataaatctttaaaatgtgaacgaattggctctaagccaggatcc 131  Q
    ||||| ||||||| || |||| ||||||||| ||||| ||||| |||||||||||||| ||| ||| |||||||||| |||| ||||||||| |||||||    
T  27908301 atgaatggaaagattaataaatatttcatttcacattgtgcaacaagaacacaagtatgaatatttgaaatgtgaaccaattagctctaagctaggatcc 27908400  T
Q  132 atgttccagtgtctatgcttcactcgacaaatttaattaactaaagacaacat 184  Q
    ||||||||   ||||  |||||||| |||| ||||||||||||||||||||||    
T  27908401 atgttccaaaatctagacttcactctacaagtttaattaactaaagacaacat 27908453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 32 - 113
Target Start/End: Complemental strand, 23971141 - 23971060
Alignment:
Q  32 atgaacggaaagactattaaacatttcatttgacattatgcaagaagaacacaagtataaatctttaaaatgtgaacgaatt 113  Q
    |||||| |||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||| || ||||||| ||||    
T  23971141 atgaactgaaagactattaaacatttcatttgacattgtgcaagaaaaacacaagtatgaatctttgaagtgtgaaccaatt 23971060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 44 - 166
Target Start/End: Complemental strand, 9021868 - 9021746
Alignment:
Q  44 actattaaacatttcatttgacattatgcaagaagaacacaagtataaatctttaaaatgtgaacgaattggctctaagccaggatccatgttccagtgt 143  Q
    ||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |||||| ||| |||| ||||||||| |  ||||||||||||| ||    
T  9021868 actattaaacatttcatttgacattgtgcaagaagaacacaagtatgaatctttgaaatgtaaaccaattagctctaagctataatccatgttccagagt 9021769  T
Q  144 ctatgcttcactcgacaaattta 166  Q
    ||| |||||||||||||| ||||    
T  9021768 ctaggcttcactcgacaagttta 9021746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 107
Target Start/End: Original strand, 25226627 - 25226679
Alignment:
Q  55 tttcatttgacattatgcaagaagaacacaagtataaatctttaaaatgtgaa 107  Q
    |||||||||||||| ||||| |||||||| ||||| ||||||| |||||||||    
T  25226627 tttcatttgacattgtgcaaaaagaacacgagtatgaatctttgaaatgtgaa 25226679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 6e-27; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 39 - 184
Target Start/End: Original strand, 21714326 - 21714471
Alignment:
Q  39 gaaagactattaaacatttcatttgacattatgcaagaagaacacaagtataaatctttaaaatgtgaacgaattggctctaagccaggatccatgttcc 138  Q
    |||||||||||||| ||||||||||| ||| |||| ||||||||||||||| ||| ||| |||||||||| |||| || |||||  |||||   ||||||    
T  21714326 gaaagactattaaatatttcatttgatattgtgcatgaagaacacaagtatgaatatttgaaatgtgaaccaattagccctaagttaggatatgtgttcc 21714425  T
Q  139 agtgtctatgcttcactcgacaaatttaattaactaaagacaacat 184  Q
    |  ||||| ||||||||| |||| |||||||||| |||||||||||    
T  21714426 aaagtctaggcttcactctacaagtttaattaacgaaagacaacat 21714471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 39 - 184
Target Start/End: Complemental strand, 13502537 - 13502392
Alignment:
Q  39 gaaagactattaaacatttcatttgacattatgcaagaagaacacaagtataaatctttaaaatgtgaacgaattggctctaagccaggatccatgttcc 138  Q
    ||||| |||||||| |||| ||| || ||| |||||||||||||||||||| ||| ||| |||||||||  |||| || |||||| |||||   ||||||    
T  13502537 gaaaggctattaaatattttattcgatattgtgcaagaagaacacaagtatgaatatttgaaatgtgaatcaattagccctaagctaggatatgtgttcc 13502438  T
Q  139 agtgtctatgcttcactcgacaaatttaattaactaaagacaacat 184  Q
    |  ||||| ||||||||| |||| ||||||||||||||||||||||    
T  13502437 aaagtctaggcttcactctacaagtttaattaactaaagacaacat 13502392  T

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Target: chr5; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 32 - 135
Target Start/End: Complemental strand, 15023671 - 15023568
Alignment:
Q  32 atgaacggaaagactattaaacatttcatttgacattatgcaagaagaacacaagtataaatctttaaaatgtgaacgaattggctctaagccaggatcc 131  Q
    ||||| ||||||||||||||||||||||||||||||| | ||| |||||||||||||| ||| ||| |||||||||  |||| ||||||| | |||||||    
T  15023671 atgaatggaaagactattaaacatttcatttgacattgtacaaaaagaacacaagtatgaatttttgaaatgtgaatcaattagctctaaactaggatcc 15023572  T
Q  132 atgt 135  Q
    ||||    
T  15023571 atgt 15023568  T

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Target: chr5; HSP #4
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 39 - 184
Target Start/End: Original strand, 21788240 - 21788386
Alignment:
Q  39 gaaagactattaaacatttcatttgacattatgcaagaagaacacaagtataaatctttaaaatgtgaacgaattggctctaagccaggatccatgttcc 138  Q
    |||| ||||||||| ||||||||||| ||| |||| ||||||||||||||| ||| ||| |||||||||| |||| || |||||  |||||   ||||||    
T  21788240 gaaaaactattaaatatttcatttgatattgtgcatgaagaacacaagtatgaatatttgaaatgtgaaccaattagccctaagttaggatatgtgttcc 21788339  T
Q  139 agtgtcta-tgcttcactcgacaaatttaattaactaaagacaacat 184  Q
    |  ||||| |||||||||| |||| |||||||||| |||||||||||    
T  21788340 aaagtctagtgcttcactctacaagtttaattaacgaaagacaacat 21788386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 3e-25; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 32 - 122
Target Start/End: Complemental strand, 4634083 - 4633993
Alignment:
Q  32 atgaacggaaagactattaaacatttcatttgacattatgcaagaagaacacaagtataaatctttaaaatgtgaacgaattggctctaag 122  Q
    ||||||||||||||||||||||||||||| |||||||||||||||| || |||| ||| ||||||| |||||||||| |||||||| ||||    
T  4634083 atgaacggaaagactattaaacatttcatatgacattatgcaagaaaaatacaaatatgaatctttgaaatgtgaaccaattggctataag 4633993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 40 - 113
Target Start/End: Complemental strand, 32238991 - 32238918
Alignment:
Q  40 aaagactattaaacatttcatttgacattatgcaagaagaacacaagtataaatctttaaaatgtgaacgaatt 113  Q
    ||||||||||||| ||||||||||||||| ||||| || ||| ||||||| |||||||||| ||||||| ||||    
T  32238991 aaagactattaaatatttcatttgacattgtgcaacaaaaacgcaagtatgaatctttaaagtgtgaactaatt 32238918  T

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Target: chr6 (Bit Score: 54; Significance: 3e-22; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 32 - 121
Target Start/End: Complemental strand, 27991620 - 27991531
Alignment:
Q  32 atgaacggaaagactattaaacatttcatttgacattatgcaagaagaacacaagtataaatctttaaaatgtgaacgaattggctctaa 121  Q
    ||||| ||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||| || |||||||||  |||| |||||||    
T  27991620 atgaatggaaagactattaaacatttcattttacattatgcaaaaagaacacaagtatgaatcattgaaatgtgaatcaattagctctaa 27991531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 33 - 97
Target Start/End: Original strand, 13627831 - 13627895
Alignment:
Q  33 tgaacggaaagactattaaacatttcatttgacattatgcaagaagaacacaagtataaatcttt 97  Q
    |||||| || ||||||||||||||| ||||||||||||||||||| ||||||| ||| |||||||    
T  13627831 tgaacgaaatgactattaaacattttatttgacattatgcaagaaaaacacaaatatgaatcttt 13627895  T

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Target: scaffold0010 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 107
Target Start/End: Complemental strand, 235802 - 235750
Alignment:
Q  55 tttcatttgacattatgcaagaagaacacaagtataaatctttaaaatgtgaa 107  Q
    |||||||||||||| ||||| |||||||  ||||| ||||||| |||||||||    
T  235802 tttcatttgacattgtgcaaaaagaacatgagtatgaatctttgaaatgtgaa 235750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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