View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1370-INSERTION-1 (Length: 263)
Name: NF1370-INSERTION-1
Description: NF1370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1370-INSERTION-1 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 8 - 263
Target Start/End: Original strand, 37974903 - 37975158
Alignment:
| Q |
8 |
tcgacaaatccacaatctattctcattaccactaaacgctccaaggaatgagggagaagacaaaatctccggtggagttgcgcaccaaggatactgtcaa |
107 |
Q |
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| T |
37974903 |
tcgacaaatccacaatctattctcattaccactaaacgctccaaggaatgagggagaagacaaaatctccggtggagttgcgcaccaaggatactgtcaa |
37975002 |
T |
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| Q |
108 |
tgatcatgtcctgaagacataattgaagcctaacatggagtgccacaatccctctaacaagggagttactatgcaacacctgtgaaattagctgaatgga |
207 |
Q |
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| T |
37975003 |
tgatcatgtcgtgaagacataattgaagcttaacatggagtgccagaatcccactaacaagggagttattatgcaacacccgtgaaattagctgaatgga |
37975102 |
T |
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| Q |
208 |
ggtttaagcatataggcaatattgtttggctactagacaataattacactataaat |
263 |
Q |
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| T |
37975103 |
ggtttaagcatataggcaatattgtttggctactagacaataattacactataaat |
37975158 |
T |
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Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 51 - 108
Target Start/End: Original strand, 25591722 - 25591779
Alignment:
| Q |
51 |
aggaatgagggagaagacaaaatctccggtggagttgcgcaccaaggatactgtcaat |
108 |
Q |
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| T |
25591722 |
aggaatgagggagaagacacagtctctagtggagttgtgcaccaaggaaactatcaat |
25591779 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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