View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1370-INSERTION-3 (Length: 391)

Name: NF1370-INSERTION-3
Description: NF1370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1370-INSERTION-3
NF1370-INSERTION-3
[»] scaffold0155 (2 HSPs)
scaffold0155 (7-391)||(25802-26195)
scaffold0155 (7-108)||(34287-34388)
[»] chr6 (12 HSPs)
chr6 (7-108)||(8507729-8507830)
chr6 (7-108)||(8548745-8548846)
chr6 (7-108)||(8625485-8625586)
chr6 (7-108)||(8647488-8647589)
chr6 (7-108)||(8843052-8843153)
chr6 (7-95)||(5082763-5082851)
chr6 (7-108)||(8527284-8527385)
chr6 (7-108)||(8541104-8541205)
chr6 (7-81)||(8834279-8834353)
chr6 (7-108)||(8514412-8514513)
chr6 (7-81)||(8830569-8830643)
chr6 (45-108)||(8627453-8627516)
[»] chr8 (1 HSPs)
chr8 (7-108)||(4538663-4538764)
[»] chr4 (3 HSPs)
chr4 (7-95)||(10779845-10779933)
chr4 (7-95)||(10973454-10973542)
chr4 (33-95)||(10782150-10782212)


Alignment Details
Target: scaffold0155 (Bit Score: 338; Significance: 0; HSPs: 2)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 7 - 391
Target Start/End: Complemental strand, 26195 - 25802
Alignment:
Q  7 aagttgttgatgtagatgttatttgcaaagaagcatccaatccttcatattgttcaaatctcctcaactcaaagccaggaggagcaaaaaatgtagatct 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26195 aagttgttgatgtagatgttatttgcaaagaagcatccaatccttcatattgttcaaatctcctcaactcaaagccaggaggagcaaaaaatgtagatct 26096  T
Q  107 tg---------caaattacactattggtgtggttaaggacaatttctatattgcatacaaacttgtcattaatttgcaaagaaatgttacggtaagaaac 197  Q
    ||         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26095 tgttgatcttgcaaattacactattggtgtggttaaggacaatttctatattgcatacaaacttgtcattaatttgcaaagaaatgttacggtaagaaac 25996  T
Q  198 tattatactcattgtgcaatagatttcgatggcgatgatagcattcgcggtaggcttttgggtgcgaaaatagatttggagctcaaaaattatccagaca 297  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25995 tattatactcgttgtgcaatagatttcgatggcgatgatagcattcgcggtaggcttttgggtgcgaaaatagatttggagctcaaaaattatccagaca 25896  T
Q  298 tggcttcacaaataggttttgttatgcaacacattgatgattgtattgatagtctgcataaaaatgatatatgcccaatactcgcaaaagatgt 391  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||| ||||| |||||    
T  25895 tggcttcacaaataggttttgttatgcaacacattgatgattgtattgatagtctgcataaaaatgatactagcccaatacttgcaaaggatgt 25802  T

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Target: scaffold0155; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 7 - 108
Target Start/End: Original strand, 34287 - 34388
Alignment:
Q  7 aagttgttgatgtagatgttatttgcaaagaagcatccaatccttcatattgttcaaatctcctcaactcaaagccaggaggagcaaaaaatgtagatct 106  Q
    |||||||||| ||| | || ||||| ||||||||  |||||||||||||||| | |||||| ||||||||||| |||||| ||| ||||  |||||||||    
T  34287 aagttgttgaagtaaaagtcatttgtaaagaagcccccaatccttcatattgcttaaatcttctcaactcaaaaccaggacgagtaaaaggtgtagatct 34386  T
Q  107 tg 108  Q
    ||    
T  34387 tg 34388  T

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Target: chr6 (Bit Score: 74; Significance: 8e-34; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 7 - 108
Target Start/End: Complemental strand, 8507830 - 8507729
Alignment:
Q  7 aagttgttgatgtagatgttatttgcaaagaagcatccaatccttcatattgttcaaatctcctcaactcaaagccaggaggagcaaaaaatgtagatct 106  Q
    ||||||||||||||||||| |||||||||||||| ||||||||||||| |||||||||||| ||||||||||| |||||| ||||||||| |||||||||    
T  8507830 aagttgttgatgtagatgtcatttgcaaagaagcctccaatccttcattttgttcaaatcttctcaactcaaaaccaggatgagcaaaaagtgtagatct 8507731  T
Q  107 tg 108  Q
    ||    
T  8507730 tg 8507729  T

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Target: chr6; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 7 - 108
Target Start/End: Original strand, 8548745 - 8548846
Alignment:
Q  7 aagttgttgatgtagatgttatttgcaaagaagcatccaatccttcatattgttcaaatctcctcaactcaaagccaggaggagcaaaaaatgtagatct 106  Q
    ||||||||||||||||||| || ||||| ||||| ||||||||||||||||||||  |||| |||||||||||||||||||||||||||  |||||||||    
T  8548745 aagttgttgatgtagatgtcatctgcaatgaagcttccaatccttcatattgttcgtatcttctcaactcaaagccaggaggagcaaaaggtgtagatct 8548844  T
Q  107 tg 108  Q
    ||    
T  8548845 tg 8548846  T

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Target: chr6; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 7 - 108
Target Start/End: Complemental strand, 8625586 - 8625485
Alignment:
Q  7 aagttgttgatgtagatgttatttgcaaagaagcatccaatccttcatattgttcaaatctcctcaactcaaagccaggaggagcaaaaaatgtagatct 106  Q
    ||||||||||||||||||| || ||||| ||||| ||||||||||||||||||||| |||| |||||||||||||||||||||||||||   ||||||||    
T  8625586 aagttgttgatgtagatgtcatctgcaatgaagcttccaatccttcatattgttcatatcttctcaactcaaagccaggaggagcaaaaggcgtagatct 8625487  T
Q  107 tg 108  Q
    ||    
T  8625486 tg 8625485  T

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Target: chr6; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 7 - 108
Target Start/End: Complemental strand, 8647589 - 8647488
Alignment:
Q  7 aagttgttgatgtagatgttatttgcaaagaagcatccaatccttcatattgttcaaatctcctcaactcaaagccaggaggagcaaaaaatgtagatct 106  Q
    ||||||||||||||||||| ||||||| |||||| ||||||||| |||||||||||||||| ||||||||||||| |||||| ||||||  |||||||||    
T  8647589 aagttgttgatgtagatgtcatttgcagagaagcctccaatcctacatattgttcaaatcttctcaactcaaagcaaggaggtgcaaaaggtgtagatct 8647490  T
Q  107 tg 108  Q
    ||    
T  8647489 tg 8647488  T

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Target: chr6; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 7 - 108
Target Start/End: Original strand, 8843052 - 8843153
Alignment:
Q  7 aagttgttgatgtagatgttatttgcaaagaagcatccaatccttcatattgttcaaatctcctcaactcaaagccaggaggagcaaaaaatgtagatct 106  Q
    ||||||||||||||||| | |||||||||||||| ||||||||| | |||||||||||||| |||||||||||| ||||||||||||||  |||||||||    
T  8843052 aagttgttgatgtagatatcatttgcaaagaagcctccaatcctacgtattgttcaaatcttctcaactcaaagtcaggaggagcaaaaggtgtagatct 8843151  T
Q  107 tg 108  Q
    ||    
T  8843152 tg 8843153  T

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Target: chr6; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 7 - 95
Target Start/End: Original strand, 5082763 - 5082851
Alignment:
Q  7 aagttgttgatgtagatgttatttgcaaagaagcatccaatccttcatattgttcaaatctcctcaactcaaagccaggaggagcaaaa 95  Q
    ||||| ||||||| ||||| |||||||||||||| |||||||  ||||||||||||||||| |||||||||||||||||||||||||||    
T  5082763 aagttattgatgttgatgtcatttgcaaagaagcctccaatcaatcatattgttcaaatcttctcaactcaaagccaggaggagcaaaa 5082851  T

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Target: chr6; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 7 - 108
Target Start/End: Original strand, 8527284 - 8527385
Alignment:
Q  7 aagttgttgatgtagatgttatttgcaaagaagcatccaatccttcatattgttcaaatctcctcaactcaaagccaggaggagcaaaaaatgtagatct 106  Q
    ||||||||||||| ||| | |||||||||||||||||||||||||| ||||| |||||||| ||||| || ||||||||||| ||||||  |||||||||    
T  8527284 aagttgttgatgtggatatcatttgcaaagaagcatccaatccttcgtattgctcaaatcttctcaattcgaagccaggaggtgcaaaaggtgtagatct 8527383  T
Q  107 tg 108  Q
    ||    
T  8527384 tg 8527385  T

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Target: chr6; HSP #8
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 7 - 108
Target Start/End: Complemental strand, 8541205 - 8541104
Alignment:
Q  7 aagttgttgatgtagatgttatttgcaaagaagcatccaatccttcatattgttcaaatctcctcaactcaaagccaggaggagcaaaaaatgtagatct 106  Q
    ||||||||||||| ||| | |||||||||||||||||||||||||| ||||| |||||||| ||||| || ||||||||||| ||||||  |||||||||    
T  8541205 aagttgttgatgtggatatcatttgcaaagaagcatccaatccttcgtattgctcaaatcttctcaattcgaagccaggaggtgcaaaaggtgtagatct 8541106  T
Q  107 tg 108  Q
    ||    
T  8541105 tg 8541104  T

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Target: chr6; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 7 - 81
Target Start/End: Complemental strand, 8834353 - 8834279
Alignment:
Q  7 aagttgttgatgtagatgttatttgcaaagaagcatccaatccttcatattgttcaaatctcctcaactcaaagc 81  Q
    ||||||||||||||||||| ||||||| |||| | ||| ||| |||||||||||||||||| |||||||||||||    
T  8834353 aagttgttgatgtagatgtcatttgcagagaatcctccgatcattcatattgttcaaatcttctcaactcaaagc 8834279  T

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Target: chr6; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 7 - 108
Target Start/End: Original strand, 8514412 - 8514513
Alignment:
Q  7 aagttgttgatgtagatgttatttgcaaagaagcatccaatccttcatattgttcaaatctcctcaactcaaagccaggaggagcaaaaaatgtagatct 106  Q
    |||||||||| |||||| | |||||||||||||| || ||||  || ||||| |||||||| |||||||| ||||||||||| ||||||  |||||||||    
T  8514412 aagttgttgacgtagatatcatttgcaaagaagcctctaatcaatcgtattgctcaaatcttctcaactcgaagccaggaggtgcaaaaggtgtagatct 8514511  T
Q  107 tg 108  Q
    ||    
T  8514512 tg 8514513  T

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Target: chr6; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 7 - 81
Target Start/End: Complemental strand, 8830643 - 8830569
Alignment:
Q  7 aagttgttgatgtagatgttatttgcaaagaagcatccaatccttcatattgttcaaatctcctcaactcaaagc 81  Q
    ||||||||||||||||| | ||||||| |||||| ||| ||| |||||||||||||||||| || ||||||||||    
T  8830643 aagttgttgatgtagatctcatttgcagagaagcctccgatcattcatattgttcaaatcttctaaactcaaagc 8830569  T

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Target: chr6; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 45 - 108
Target Start/End: Original strand, 8627453 - 8627516
Alignment:
Q  45 aatccttcatattgttcaaatctcctcaactcaaagccaggaggagcaaaaaatgtagatcttg 108  Q
    ||||||||||||||||||||||| ||||||||||||||||  || ||||||  |||||||||||    
T  8627453 aatccttcatattgttcaaatcttctcaactcaaagccagttggtgcaaaaggtgtagatcttg 8627516  T

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Target: chr8 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 7 - 108
Target Start/End: Original strand, 4538663 - 4538764
Alignment:
Q  7 aagttgttgatgtagatgttatttgcaaagaagcatccaatccttcatattgttcaaatctcctcaactcaaagccaggaggagcaaaaaatgtagatct 106  Q
    ||||| ||||||| ||||| |||||||||||||| |||||||  ||||||||||||||||| |||||||||||||||||||||||||||  || ||||||    
T  4538663 aagttattgatgttgatgtcatttgcaaagaagcctccaatcaatcatattgttcaaatcttctcaactcaaagccaggaggagcaaaaggtgcagatct 4538762  T
Q  107 tg 108  Q
    ||    
T  4538763 tg 4538764  T

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Target: chr4 (Bit Score: 53; Significance: 3e-21; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 7 - 95
Target Start/End: Complemental strand, 10779933 - 10779845
Alignment:
Q  7 aagttgttgatgtagatgttatttgcaaagaagcatccaatccttcatattgttcaaatctcctcaactcaaagccaggaggagcaaaa 95  Q
    ||||||| || ||| |||| |||||||||||||| || |||||||||||||| | |||||| |||||||||||||||||||||||||||    
T  10779933 aagttgtcgaagtaaatgtcatttgcaaagaagcctcaaatccttcatattgcttaaatcttctcaactcaaagccaggaggagcaaaa 10779845  T

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Target: chr4; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 7 - 95
Target Start/End: Complemental strand, 10973542 - 10973454
Alignment:
Q  7 aagttgttgatgtagatgttatttgcaaagaagcatccaatccttcatattgttcaaatctcctcaactcaaagccaggaggagcaaaa 95  Q
    ||||||| || ||| |||| |||||||||||||| || |||||||||||||| | |||||| |||||||||||||||||||||||||||    
T  10973542 aagttgtcgaagtaaatgtcatttgcaaagaagcctcaaatccttcatattgcttaaatcttctcaactcaaagccaggaggagcaaaa 10973454  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 33 - 95
Target Start/End: Complemental strand, 10782212 - 10782150
Alignment:
Q  33 aaagaagcatccaatccttcatattgttcaaatctcctcaactcaaagccaggaggagcaaaa 95  Q
    |||||||| ||||||||||||||||| | |||||| |||||||||||| ||||| ||||||||    
T  10782212 aaagaagcctccaatccttcatattgcttaaatcttctcaactcaaagtcaggaagagcaaaa 10782150  T

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