View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1370-INSERTION-6 (Length: 303)
Name: NF1370-INSERTION-6
Description: NF1370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1370-INSERTION-6 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 8 - 303
Target Start/End: Complemental strand, 46215244 - 46214949
Alignment:
| Q |
8 |
gtttagctttgatcatagccgcgattccacttacatgaggacatgacatcgaagttccggaaagtatgttaaacttaacccttctatgatctattggtaa |
107 |
Q |
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| T |
46215244 |
gtttagctttgatcatagccgcgattccacttacatgaggacatgacatcgaagttccggagagtatgttaaacttaacccttctatgatctattggtaa |
46215145 |
T |
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| Q |
108 |
acttgatggaccagtaagtccactccaagcagcaagaatgttcacaccaggtgctactatatcaggttttagaatttcaagtgtgagtaaacttggccct |
207 |
Q |
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| T |
46215144 |
acttgatggaccagtaagtccactccaagcagcaagaatgttcacaccaggtgctactatatcaggttttagaatttcaagtgtgagtaaacttggccct |
46215045 |
T |
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| Q |
208 |
cttgatgaaaatgctgctactataggagatggtctaattcctaatcttgtgttatgaaaagctaatgtagctgtagcttttttagttgttaacaca |
303 |
Q |
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| T |
46215044 |
cttgatgaaaatgctgctactataggagatggtctaattcctaatcttgtgttatgaaaagctaatgtagctgtagcttttttagttgttaacaca |
46214949 |
T |
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Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 71 - 163
Target Start/End: Complemental strand, 18203065 - 18202973
Alignment:
| Q |
71 |
gtatgttaaacttaacccttctatgatctattggtaaacttgatggaccagtaagtccactccaagcagcaagaatgttcacaccaggtgcta |
163 |
Q |
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| T |
18203065 |
gtatgttaaacttcattcttttatgatatgttagtaaacttgatggaccattaagtccactccaaactgcaagaatgttcacaccaggtgcta |
18202973 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 8 - 83
Target Start/End: Original strand, 366766 - 366841
Alignment:
| Q |
8 |
gtttagctttgatcatagccgcgattccacttacatgaggacatgacatcgaagttccggaaagtatgttaaactt |
83 |
Q |
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| T |
366766 |
gtttagctttgatcattttcgcgattccacttacatgaggacatgacattgaagttccggaaaacatgttaaactt |
366841 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 82
Target Start/End: Original strand, 7523866 - 7523920
Alignment:
| Q |
28 |
gcgattccacttacatgaggacatgacatcgaagttccggaaagtatgttaaact |
82 |
Q |
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| T |
7523866 |
gcgattccactaacatgaggacatgacatagaagtacctgaaattatgttaaact |
7523920 |
T |
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