View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1370-INSERTION-8 (Length: 673)
Name: NF1370-INSERTION-8
Description: NF1370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1370-INSERTION-8 |
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Alignment Details
Target: chr2 (Bit Score: 478; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 30 - 599
Target Start/End: Complemental strand, 28834199 - 28833629
Alignment:
| Q |
30 |
tagttgtatatattaaatcatggaaaaagatacccctccatatgcaataacttgtaattttctttttctctgccaagatgtgataattcatgttacttca |
129 |
Q |
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| T |
28834199 |
tagttgtatatattaaatcatggaaaaagatacccctccatatgcaataactaataattttctttttctctgccaagatgtgataattcatgttacttca |
28834100 |
T |
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| Q |
130 |
tgatcacgtcccattcatttctattgttcataataatacaaccaaaataatgtcctcttgctcttttatagggccaaaatttaagtcacattaagctata |
229 |
Q |
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| T |
28834099 |
tgatcacgtcccattcatttctattgttcataataatacaaccaaaataatgtccccttgctcttttatagggtcaaaatttaagtcacattaagctata |
28834000 |
T |
|
| Q |
230 |
gggaatatcgagaacagtnnnnnnntatcatacctatttgccgtgcatgaataattatgctttggtttctatgtctgtaccggttgcctgccctcactca |
329 |
Q |
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| T |
28833999 |
gggaatatcgagaacaataaaaaaatatcatacctatttgccgtgcatgaataattatgccttggtttctatgtctgtacgggttgcctgccctcactca |
28833900 |
T |
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| Q |
330 |
tataatatatactttgtcataaacttaattatctagtggattaatctaaacttatacccttgtgactttatgctaatcatatattataaggtcaagtcta |
429 |
Q |
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| T |
28833899 |
tataatatatactttgtcataaacttaattatctagtggattaatctaaacttatacccttgtgactttatgctaatcatatattataaggtcaagtcta |
28833800 |
T |
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| Q |
430 |
aaattaaatagtaaattagtgtgttgatatgagcaaac-nnnnnnnnagcaatatgttcacactttatataatttggctttagtgtttctttcatcattt |
528 |
Q |
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| T |
28833799 |
aaattaaatagtaaattagtgtgttgatatgaccaaactttttttttagcaatatgatcacactttatataatttggctttagtatttctttcatcattt |
28833700 |
T |
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| Q |
529 |
aatacttatttgagagttaaatttttactgtcccttaggtagcaagttatcatgtcaaagattgtttgagg |
599 |
Q |
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| T |
28833699 |
aatacttatttgagagttaaatttttactgtcccttaggtagcaagttatcatgtcaaagattgtttgagg |
28833629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 620 - 673
Target Start/End: Complemental strand, 28833638 - 28833585
Alignment:
| Q |
620 |
ttgtttgaggttaaaacttgctaaaagtaaacttgaaaaacatcgtatagtctg |
673 |
Q |
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||||||||||||||||||||| |||| ||||||||||||||||||||||||||| |
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| T |
28833638 |
ttgtttgaggttaaaacttgcaaaaactaaacttgaaaaacatcgtatagtctg |
28833585 |
T |
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